Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002877

Physical Location & Seq

Genomic Coordinates Reverse (-)

38063541 .. 38065879

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00029480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGTACGTCTTAAAGAATAAAGATGACGGTATTTTCAAATGGATCTCATATTCCTGCAAATGCATAAAGGAATTACATCTTGAAAAAGTTATTGGGATAAAAGATATCAAGATTGAGAGCTCGTCTTTGGAATCGTTTAGTCTTTTGCTTCCTTTTCAGAATTATGAGCTCTGGGATCTTAGCATTTCAGCTGAAAAACTTGAAGATATATGTATACACTGGCAATTTGATTCGAGACGTGATTCAAAGTTTCATCTTTTACCTCGCATCAGATCATTTAATCTCTTTGCTCCAAAGCTTAAAAATTTCAAATGGAGTGGGAATTTTCTGAACCATCATCATCTTGGGAACTTGATGTGTTTAGAAGAAGCTGACATATTTCTGATGCCCGATTTAGATGATTCTAGCAACCTATTTGAGGTTCTTTGCAGCATATGTATGGTTAAAGTTCTAACCCTAAATGAAGAAACTACAAAGGTAAGAACAAATGCCCTTCAGACTATGAAATCTTTTTATGTGGCTATATGGCATGTCACTGCTGCGAATACAATATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

185

Amino Acids

21.7

Weight (kDa)

6.37

Isoelectric Point (pI)

38.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157031 RchiOBHm_Chr5g0068981 RchiOBHm_Chr5g0069001
rosa_laevigata	RLG00000036027 RLG00000036029
rosa_multiflora	Rmu_sc0000853.1_g000002 Rmu_sc0000853.1_g000004 Rmu_sc0000936.1_g000002 Rmu_sc0006282.1_g000034 Rmu_sc0006282.1_g000035
rosa_roxburghii	Rroxscaffold_1G00011720 Rroxscaffold_1G00011740 Rroxscaffold_1G00029480 Rroxscaffold_3G00231060
rosa_rugosa	Rorug05G0395500 Rorug05G0395600 Rorug07G0214700 Rorug07G0214900
rosa_samantha	Rh2BG537000 Rh2BG537100 Rh2BG537200 Rh2DG545800 Rh2DG545900 Rh2DG546000 Rh5AG452100 Rh5AG452300 Rh5BG471100 Rh5BG471300 Rh5CG493500 Rh5CG493800 Rh5DG483800 Rh5DG484000 Rh7BG348100 Rh7BG348200 Rh7BG348400
rosa_wichuraiana	Rw0G006120 Rw0G006140 Rw2G043220 Rw5G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	214
AclWI	GGATC	2 cut(s)	50, 183
AcsI	RAATTY	2 cut(s)	304, 322
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	418
AgsI	TTSAA	5 cut(s)	37, 83, 203, 246, 310
AjiI	CACGTC	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	5 cut(s)	120, 169, 191, 298, 371
AluI	AGCT	5 cut(s)	120, 169, 191, 298, 371
Alw21I	GWGCWC	2 cut(s)	122, 171
Alw26I	GTCTC	1 cut(s)	229
AlwI	GGATC	2 cut(s)	50, 183
ApeKI	GCWGC	2 cut(s)	429, 539
ApoI	RAATTY	2 cut(s)	304, 322
BanII	GRGCYC	2 cut(s)	122, 171
Bbv12I	GWGCWC	2 cut(s)	122, 171
BbvI	GCAGC	2 cut(s)	441, 526
BccI	CCATC	1 cut(s)	342
BcoDI	GTCTC	1 cut(s)	229
BfaI	CTAG	1 cut(s)	405
BisI	GCNGC	2 cut(s)	430, 540
BlsI	GCNGC	2 cut(s)	431, 541
BmgBI	CACGTC	1 cut(s)	239
BmsI	GCATC	2 cut(s)	276, 375
Bsc4I	CCNNNNNNNGG	1 cut(s)	418
Bse1I	ACTGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	224
BseXI	GCAGC	2 cut(s)	441, 526
BsiHKAI	GWGCWC	2 cut(s)	122, 171
BslI	CCNNNNNNNGG	1 cut(s)	418
BsmAI	GTCTC	1 cut(s)	229
BsmBI	CGTCTC	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	122, 171
Bsp143I	GATC	3 cut(s)	42, 175, 272
BspPI	GGATC	2 cut(s)	50, 183
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	3 cut(s)	42, 175, 272
BssNAI	GTATAC	1 cut(s)	215
Bst1107I	GTATAC	1 cut(s)	215
Bst4CI	ACNGT	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	179
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstKTI	GATC	3 cut(s)	45, 178, 275
BstMAI	GTCTC	1 cut(s)	229
BstMBI	GATC	3 cut(s)	42, 175, 272
BstNSI	RCATGY	1 cut(s)	533
BstV1I	GCAGC	2 cut(s)	441, 526
BstX2I	RGATCY	2 cut(s)	42, 175
BstYI	RGATCY	2 cut(s)	42, 175
BstZ17I	GTATAC	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	239
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	217, 534
Csp6I	GTAC	1 cut(s)	4
CspCI	CAANNNNNGTGG	2 cut(s)	298, 333
CviAII	CATG	1 cut(s)	530
CviJI	RGCY	6 cut(s)	120, 169, 191, 298, 371, 521
CviKI_1	RGCY	6 cut(s)	120, 169, 191, 298, 371, 521
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	3 cut(s)	44, 177, 274
DpnII	GATC	3 cut(s)	42, 175, 272
Ecl136II	GAGCTC	2 cut(s)	120, 169
Eco24I	GRGCYC	2 cut(s)	122, 171
Eco32I	GATATC	1 cut(s)	106
Eco53kI	GAGCTC	2 cut(s)	120, 169
Eco57I	CTGAAG	1 cut(s)	479
EcoICRI	GAGCTC	2 cut(s)	120, 169
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoRV	GATATC	1 cut(s)	106
EcoT22I	ATGCAT	1 cut(s)	65
EcoT38I	GRGCYC	2 cut(s)	122, 171
Esp3I	CGTCTC	1 cut(s)	229
FaeI	CATG	1 cut(s)	533
FatI	CATG	1 cut(s)	529
FauNDI	CATATG	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	2 cut(s)	430, 540
FriOI	GRGCYC	2 cut(s)	122, 171
Fsp4HI	GCNGC	2 cut(s)	430, 540
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	2 cut(s)	430, 540
Hin1II	CATG	1 cut(s)	533
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	4 cut(s)	131, 230, 242, 401
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	5 cut(s)	159, 272, 330, 384, 498
Hpy188III	TCNNGA	3 cut(s)	80, 109, 234
Hpy8I	GTNNAC	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	503
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4IV	ACGT	2 cut(s)	6, 238
HpyCH4V	TGCA	3 cut(s)	57, 63, 429
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	2 cut(s)	6, 238
Hsp92II	CATG	1 cut(s)	533
Kzo9I	GATC	3 cut(s)	42, 175, 272
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	3 cut(s)	67, 157, 205
Lsp1109I	GCAGC	2 cut(s)	441, 526
LweI	GCATC	2 cut(s)	276, 375
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	6, 238
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	3 cut(s)	44, 177, 274
MboI	GATC	3 cut(s)	42, 175, 272
MboII	GAAGA	3 cut(s)	215, 377, 476
MflI	RGATCY	2 cut(s)	42, 175
MhlI	GDGCHC	2 cut(s)	122, 171
MluCI	AATT	5 cut(s)	71, 160, 224, 304, 322
MnlI	CCTC	2 cut(s)	273, 412
Mph1103I	ATGCAT	1 cut(s)	65
MseI	TTAA	4 cut(s)	11, 279, 300, 444
MslI	CAYNNNNRTG	1 cut(s)	437
MspA1I	CMGCKG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	3 cut(s)	42, 175, 272
NlaIII	CATG	1 cut(s)	533
NmuCI	GTSAC	1 cut(s)	532
NsiI	ATGCAT	1 cut(s)	65
NspI	RCATGY	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	131, 230, 242, 401
PkrI	GCNGC	2 cut(s)	431, 541
Psp124BI	GAGCTC	2 cut(s)	122, 171
PsuI	RGATCY	2 cut(s)	42, 175
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	437
SacI	GAGCTC	2 cut(s)	122, 171
SaqAI	TTAA	4 cut(s)	11, 279, 300, 444
SatI	GCNGC	2 cut(s)	430, 540
Sau3AI	GATC	3 cut(s)	42, 175, 272
SduI	GDGCHC	2 cut(s)	122, 171
SfaNI	GCATC	2 cut(s)	276, 375
SmiMI	CAYNNNNRTG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	71, 160, 224, 304, 322
SspMI	CTAG	1 cut(s)	405
SstI	GAGCTC	2 cut(s)	122, 171
TaaI	ACNGT	1 cut(s)	29
TaiI	ACGT	2 cut(s)	9, 241
TaqI	TCGA	1 cut(s)	233
TasI	AATT	5 cut(s)	71, 160, 224, 304, 322
TfiI	GAWTC	4 cut(s)	131, 230, 242, 401
Tru1I	TTAA	4 cut(s)	11, 279, 300, 444
Tru9I	TTAA	4 cut(s)	11, 279, 300, 444
TscAI	CASTG	2 cut(s)	224, 541
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	429, 539
Tsp45I	GTSAC	1 cut(s)	532
TspDTI	ATGAA	3 cut(s)	242, 477, 518
TspRI	CASTG	2 cut(s)	224, 541
XagI	CCTNNNNNAGG	1 cut(s)	416
XapI	RAATTY	2 cut(s)	304, 322
XceI	RCATGY	1 cut(s)	533
XcmI	CCANNNNNNNNNTGG	1 cut(s)	341
XmiI	GTMKAC	1 cut(s)	214
XspI	CTAG	1 cut(s)	405
Zsp2I	ATGCAT	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.