Rorug07G0214900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002877
Physical Location & Seq
Forward (+)
19051831 .. 19053888
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0214900.1

Sequence Viewer

Length: 1395 bp
ATGGACCAGAGGTTGAAGGAGGCTTCTCAATCTGGAGATATTGATTTCTTGTACAGATTGATTATGGAGGATGGTGAACTTCTAGATCACATTACTGGGGCATCATTTGTCGATACTCCTCTACACATAGCTGCTGCCGAAGGGCATTCACAGTTTGCCATGGAGATAATGAGGCTAAAGCCATCATTTGCTAGGAAGCCGAACCAAGATGGATTTAATCCCATGCACTTGGCCCTGCAAAGTGGAAAAACCAGGATGGTGGTTCGTCTCTTAGATGCTGATAGAAGCCTTGTTCGTGTGCCAGGGAGGGAGGGTGTGACACCTTTGCACTATGTAGCCAGGGAAGGAAATATCGAACTCTTAGATGTGTTTCTATCGGCCTGCCCAAAATCTTTGGAGGATGTGACAATTCGAAACGAGACCTCTCTGCATATTGCGCTGAAAAATGACAAGGTCGAAGCATTTGAATTTGTGTTTAGATGGCTAAAAGAGGTCTGTTATGAAGAGGTACATCAATTGGAGAAAAAGGTATTGAACTGGAAGGATGAGGATGGCAACACTTTGTTGCACATTGCAGCACTTAGAAATCAACCTGAGGCAGTTATGCTTTTATTGACCTCACAAGTTGATGTAAACTTCAAGAATTTGGCGGGTTGGACTCCCCTGGACATCATACAGCATCAACAGCCACTGAATGACAGACGAATAAGGACTATGCTATGTGGTGCTGGAGCTCTTGAAGGATCTTCACTTCTGTCTGTTCCAACCTTCACGTATTACAAAAGCACGGATCAAAGGTTGAAGCAGGCTGCGCAAGGGGGGAATATTGGTGGCCTGTATGCACTGATACAGGAGGACTCATATATATTGGAGCGCATCAACCTTGTTCCATTTGTTGATACTCCTTTGCACATTGCTGCATCTTCAGGGCATACCGATTTTGCCATGGAGATGATGAGATTGAAGCCAGAATTTGCAAGGAAGCAAAACCCGGAAGGCTTCAGCGCAATGCACCTTGCTTTGAAGCAAGGAAAAACACATACATTGCTTTTTCTCCTGTCCGTCTATAGGGACCTTGTCCGAGTCAAAGGAAGGGAGGGAAAGACTCTCTTGCATTATGCAGCCGAAATTGGATACTTAGATCTTTTGGCTGAGTTTTTAGCAGCTTCCCCAGAGTCTATCATAGATCTGACAATTCGAAAAGAAACTGCACTTCATGTTGCTGCAAAGAATGACAAGTTGGAAGCACTTGAAGTCTTGATGGGATGGCTTCACCATGTTGATATGGACATGATCTTGCAGTGGACTGATGATGAAGGCAACACTGTACTGCACATTGCAATATTAAGAAATCAATTCCAGGCAAACTTTTCTTCCCTCAGTACTTATCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

464

Amino Acids

52.38

Weight (kDa)

5.78

Isoelectric Point (pI)

38.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 7 - 92 1.5e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 176 - 223 7.2e-06 Ankyrin repeats (3 copies)
Ank_5 PF13857 178 - 224 4.7e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 268 - 354 3.2e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 365 - 421 1.3e-06 Ankyrin repeats (3 copies)
Ank_2 PF12796 371 - 453 4.1e-09 Ankyrin repeats (3 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 813
AciI CCGC 1 cut(s) 650
AclWI GGATC 2 cut(s) 751, 798
AcsI RAATTY 3 cut(s) 467, 643, 971
AcuI CTGAAG 2 cut(s) 909, 985
AfaI GTAC 4 cut(s) 53, 510, 1329, 1384
AfiI CCNNNNNNNGG 1 cut(s) 1068
AgsI TTSAA 9 cut(s) 16, 467, 535, 640, 740, 802, 964, 1024, 1253
AjnI CCWGG 5 cut(s) 251, 301, 338, 663, 1359
AjuI GAANNNNNNNTTGG 2 cut(s) 1223, 1255
AluBI AGCT 3 cut(s) 131, 734, 1166
AluI AGCT 3 cut(s) 131, 734, 1166
Alw21I GWGCWC 1 cut(s) 736
Alw26I GTCTC 2 cut(s) 272, 413
AlwI GGATC 2 cut(s) 751, 798
AlwNI CAGNNNCTG 1 cut(s) 691
AoxI GGCC 3 cut(s) 231, 378, 832
ApeKI GCWGC 8 cut(s) 131, 134, 575, 809, 917, 1121, 1163, 1223
ApoI RAATTY 3 cut(s) 467, 643, 971
AspLEI GCGC 4 cut(s) 439, 814, 876, 1007
AspS9I GGNCC 3 cut(s) 4, 232, 1072
AsuC2I CCSGG 1 cut(s) 992
AsuHPI GGTGA 2 cut(s) 86, 1265
AsuII TTCGAA 2 cut(s) 412, 1198
AvaII GGWCC 2 cut(s) 4, 1072
AxyI CCTNAGG 1 cut(s) 594
BanII GRGCYC 1 cut(s) 736
Bbv12I GWGCWC 1 cut(s) 736
BbvI GCAGC 8 cut(s) 118, 121, 587, 796, 904, 1133, 1175, 1210
BccI CCATC 8 cut(s) 65, 190, 203, 250, 474, 545, 1255, 1260
BciT130I CCWGG 5 cut(s) 253, 303, 340, 665, 1361
BciVI GTATCC 1 cut(s) 1127
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 2 cut(s) 272, 413
BfaI CTAG 2 cut(s) 83, 192
BfmI CTRYAG 1 cut(s) 1066
BfuI GTATCC 1 cut(s) 1127
BglII AGATCT 2 cut(s) 1141, 1186
BisI GCNGC 8 cut(s) 132, 135, 576, 810, 918, 1122, 1164, 1224
BlsI GCNGC 8 cut(s) 133, 136, 577, 811, 919, 1123, 1165, 1225
BmcAI AGTACT 1 cut(s) 1384
Bme1390I CCNGG 6 cut(s) 253, 303, 340, 665, 992, 1361
Bme18I GGWCC 2 cut(s) 4, 1072
BmgT120I GGNCC 3 cut(s) 4, 232, 1072
BmiI GGNNCC 1 cut(s) 1073
BmrFI CCNGG 6 cut(s) 253, 303, 340, 665, 992, 1361
BmrI ACTGGG 1 cut(s) 105
BmsI GCATC 5 cut(s) 110, 265, 688, 885, 929
BmuI ACTGGG 1 cut(s) 105
BpmI CTGGAG 2 cut(s) 54, 750
Bpu14I TTCGAA 2 cut(s) 412, 1198
BpuMI CCSGG 1 cut(s) 992
BsaAI YACGTR 1 cut(s) 774
BsaI GGTCTC 1 cut(s) 413
BsaJI CCNNGG 5 cut(s) 159, 302, 339, 663, 945
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 1068
Bse1I ACTGG 2 cut(s) 100, 542
Bse21I CCTNAGG 1 cut(s) 594
Bse3DI GCAATG 5 cut(s) 570, 912, 1014, 1043, 1335
BseBI CCWGG 5 cut(s) 253, 303, 340, 665, 1361
BseDI CCNNGG 5 cut(s) 159, 302, 339, 663, 945
BseGI GGATG 6 cut(s) 76, 261, 406, 550, 556, 1271
BseLI CCNNNNNNNGG 1 cut(s) 1068
BseMI GCAATG 5 cut(s) 570, 912, 1014, 1043, 1335
BseMII CTCAG 3 cut(s) 585, 1143, 1393
BseNI ACTGG 2 cut(s) 100, 542
BseRI GAGGAG 1 cut(s) 108
BseXI GCAGC 8 cut(s) 118, 121, 587, 796, 904, 1133, 1175, 1210
BsgI GTGCAG 2 cut(s) 1194, 1316
BshFI GGCC 3 cut(s) 233, 380, 834
BsiHKAI GWGCWC 1 cut(s) 736
BsiSI CCGG 1 cut(s) 992
BslFI GGGAC 1 cut(s) 1085
BslI CCNNNNNNNGG 1 cut(s) 1068
BsmAI GTCTC 2 cut(s) 272, 413
BsmBI CGTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 1085
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 3 cut(s) 233, 380, 834
Bso31I GGTCTC 1 cut(s) 413
Bsp119I TTCGAA 2 cut(s) 412, 1198
Bsp1286I GDGCHC 1 cut(s) 736
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
Bsp19I CCATGG 2 cut(s) 159, 945
BspACI CCGC 1 cut(s) 650
BspANI GGCC 3 cut(s) 233, 380, 834
BspCNI CTCAG 3 cut(s) 586, 1144, 1392
BspLI GGNNCC 1 cut(s) 1073
BspPI GGATC 2 cut(s) 751, 798
BspT104I TTCGAA 2 cut(s) 412, 1198
BspTNI GGTCTC 1 cut(s) 413
BsrDI GCAATG 5 cut(s) 570, 912, 1014, 1043, 1335
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 2 cut(s) 100, 542
BssECI CCNNGG 5 cut(s) 159, 302, 339, 663, 945
BssMI GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
BssT1I CCWWGG 2 cut(s) 159, 945
Bst2UI CCWGG 5 cut(s) 253, 303, 340, 665, 1361
Bst4CI ACNGT 2 cut(s) 153, 1327
Bst6I CTCTTC 1 cut(s) 498
BstAUI TGTACA 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 774
BstBI TTCGAA 2 cut(s) 412, 1198
BstC8I GCNNGC 2 cut(s) 382, 807
BstDEI CTNAG 7 cut(s) 271, 361, 581, 594, 1138, 1152, 1379
BstDSI CCRYGG 2 cut(s) 159, 945
BstF5I GGATG 6 cut(s) 76, 261, 406, 550, 556, 1271
BstHHI GCGC 4 cut(s) 439, 814, 876, 1007
BstKTI GATC 6 cut(s) 88, 746, 793, 1144, 1189, 1296
BstMAI GTCTC 2 cut(s) 272, 413
BstMBI GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
BstMWI GCNNNNNNNGC 3 cut(s) 436, 685, 811
BstNI CCWGG 5 cut(s) 253, 303, 340, 665, 1361
BstSCI CCNGG 6 cut(s) 251, 301, 338, 663, 990, 1359
BstSFI CTRYAG 1 cut(s) 1066
BstV1I GCAGC 8 cut(s) 118, 121, 587, 796, 904, 1133, 1175, 1210
BstX2I RGATCY 3 cut(s) 743, 1141, 1186
BstXI CCANNNNNNTGG 2 cut(s) 229, 259
BstYI RGATCY 3 cut(s) 743, 1141, 1186
Bsu36I CCTNAGG 1 cut(s) 594
BsuI GTATCC 1 cut(s) 1127
BsuRI GGCC 3 cut(s) 233, 380, 834
BtgI CCRYGG 2 cut(s) 159, 945
BtsCI GGATG 6 cut(s) 76, 261, 406, 550, 556, 1271
BtsI GCAGTG 1 cut(s) 1307
BtsIMutI CAGTG 4 cut(s) 689, 842, 1307, 1323
Cac8I GCNNGC 2 cut(s) 382, 807
CaiI CAGNNNCTG 1 cut(s) 691
CfoI GCGC 4 cut(s) 439, 814, 876, 1007
Cfr13I GGNCC 3 cut(s) 4, 232, 1072
Csp6I GTAC 4 cut(s) 52, 509, 1328, 1383
CviAII CATG 6 cut(s) 160, 223, 946, 1217, 1277, 1291
CviQI GTAC 4 cut(s) 52, 509, 1328, 1383
DdeI CTNAG 7 cut(s) 271, 361, 581, 594, 1138, 1152, 1379
DpnI GATC 6 cut(s) 87, 745, 792, 1143, 1188, 1295
DpnII GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Ecl136II GAGCTC 1 cut(s) 734
Eco130I CCWWGG 2 cut(s) 159, 945
Eco24I GRGCYC 1 cut(s) 736
Eco31I GGTCTC 1 cut(s) 413
Eco47I GGWCC 2 cut(s) 4, 1072
Eco53kI GAGCTC 1 cut(s) 734
Eco57I CTGAAG 2 cut(s) 909, 985
Eco81I CCTNAGG 1 cut(s) 594
EcoICRI GAGCTC 1 cut(s) 734
EcoO109I RGGNCCY 1 cut(s) 1072
EcoRII CCWGG 5 cut(s) 251, 301, 338, 663, 1359
EcoT14I CCWWGG 2 cut(s) 159, 945
EcoT38I GRGCYC 1 cut(s) 736
ErhI CCWWGG 2 cut(s) 159, 945
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 6 cut(s) 163, 226, 949, 1220, 1280, 1294
FalI AAGNNNNNCTT 2 cut(s) 1094, 1126
FaqI GGGAC 1 cut(s) 1085
FatI CATG 6 cut(s) 159, 222, 945, 1216, 1276, 1290
FauI CCCGC 1 cut(s) 643
Fnu4HI GCNGC 8 cut(s) 132, 135, 576, 810, 918, 1122, 1164, 1224
FokI GGATG 6 cut(s) 83, 268, 413, 557, 563, 1278
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 8 cut(s) 132, 135, 576, 810, 918, 1122, 1164, 1224
FspBI CTAG 2 cut(s) 83, 192
FspI TGCGCA 1 cut(s) 813
GlaI GCGC 4 cut(s) 438, 813, 875, 1006
GluI GCNGC 8 cut(s) 132, 135, 576, 810, 918, 1122, 1164, 1224
GsuI CTGGAG 2 cut(s) 54, 750
HaeIII GGCC 3 cut(s) 233, 380, 834
HapII CCGG 1 cut(s) 992
HhaI GCGC 4 cut(s) 439, 814, 876, 1007
Hin1II CATG 6 cut(s) 163, 226, 949, 1220, 1280, 1294
Hin6I GCGC 4 cut(s) 437, 812, 874, 1005
HinP1I GCGC 4 cut(s) 437, 812, 874, 1005
HinfI GANTC 5 cut(s) 658, 857, 1083, 1105, 1175
HpaII CCGG 1 cut(s) 992
HphI GGTGA 2 cut(s) 86, 1265
Hpy166II GTNNAC 3 cut(s) 77, 634, 1305
Hpy188I TCNGA 2 cut(s) 1082, 1191
Hpy188III TCNNGA 5 cut(s) 33, 83, 640, 737, 1258
Hpy8I GTNNAC 3 cut(s) 77, 634, 1305
HpyAV CCTTC 9 cut(s) 10, 134, 338, 535, 734, 778, 989, 1086, 1310
HpyCH4III ACNGT 2 cut(s) 153, 1327
HpyCH4IV ACGT 1 cut(s) 773
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 685, 811
HpyF3I CTNAG 7 cut(s) 271, 361, 581, 594, 1138, 1152, 1379
HpySE526I ACGT 1 cut(s) 773
Hsp92II CATG 6 cut(s) 163, 226, 949, 1220, 1280, 1294
HspAI GCGC 4 cut(s) 437, 812, 874, 1005
Kzo9I GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
LmnI GCTCC 2 cut(s) 731, 871
Lsp1109I GCAGC 8 cut(s) 118, 121, 587, 796, 904, 1133, 1175, 1210
LweI GCATC 5 cut(s) 110, 265, 688, 885, 929
MaeI CTAG 2 cut(s) 83, 192
MaeII ACGT 1 cut(s) 773
MaeIII GTNAC 2 cut(s) 316, 403
MalI GATC 6 cut(s) 87, 745, 792, 1143, 1188, 1295
MboI GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
MboII GAAGA 4 cut(s) 515, 738, 915, 1365
MfeI CAATTG 1 cut(s) 515
MflI RGATCY 3 cut(s) 743, 1141, 1186
MhlI GDGCHC 1 cut(s) 736
MluCI AATT 8 cut(s) 408, 467, 515, 643, 971, 1128, 1194, 1355
MlyI GAGTC 5 cut(s) 652, 851, 1092, 1099, 1184
MmeI TCCRAC 3 cut(s) 635, 788, 1221
MseI TTAA 2 cut(s) 216, 1346
MslI CAYNNNNRTG 1 cut(s) 950
MspI CCGG 1 cut(s) 992
MspR9I CCNGG 6 cut(s) 253, 303, 340, 665, 992, 1361
MunI CAATTG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 5 cut(s) 253, 303, 340, 665, 1361
MwoI GCNNNNNNNGC 3 cut(s) 436, 685, 811
NciI CCSGG 1 cut(s) 992
NcoI CCATGG 2 cut(s) 159, 945
NdeII GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
NlaIII CATG 6 cut(s) 163, 226, 949, 1220, 1280, 1294
NlaIV GGNNCC 1 cut(s) 1073
NmuCI GTSAC 2 cut(s) 316, 403
NsbI TGCGCA 1 cut(s) 813
NspV TTCGAA 2 cut(s) 412, 1198
PctI GAATGC 1 cut(s) 145
PflFI GACNNNGTC 2 cut(s) 452, 1076
PkrI GCNGC 8 cut(s) 133, 136, 577, 811, 919, 1123, 1165, 1225
PleI GAGTC 5 cut(s) 652, 851, 1091, 1099, 1183
PpsI GAGTC 5 cut(s) 652, 851, 1091, 1099, 1183
Ppu21I YACGTR 1 cut(s) 774
PpuMI RGGWCCY 1 cut(s) 1072
Psp124BI GAGCTC 1 cut(s) 736
Psp5II RGGWCCY 1 cut(s) 1072
Psp6I CCWGG 5 cut(s) 251, 301, 338, 663, 1359
PspGI CCWGG 5 cut(s) 251, 301, 338, 663, 1359
PspN4I GGNNCC 1 cut(s) 1073
PspPI GGNCC 3 cut(s) 4, 232, 1072
PspPPI RGGWCCY 1 cut(s) 1072
PstNI CAGNNNCTG 1 cut(s) 691
PsuI RGATCY 3 cut(s) 743, 1141, 1186
PsyI GACNNNGTC 2 cut(s) 452, 1076
RsaI GTAC 4 cut(s) 53, 510, 1329, 1384
RsaNI GTAC 4 cut(s) 52, 509, 1328, 1383
RseI CAYNNNNRTG 1 cut(s) 950
SacI GAGCTC 1 cut(s) 736
SaqAI TTAA 2 cut(s) 216, 1346
SatI GCNGC 8 cut(s) 132, 135, 576, 810, 918, 1122, 1164, 1224
Sau3AI GATC 6 cut(s) 85, 743, 790, 1141, 1186, 1293
Sau96I GGNCC 3 cut(s) 4, 232, 1072
ScaI AGTACT 1 cut(s) 1384
SchI GAGTC 5 cut(s) 652, 851, 1092, 1099, 1184
ScrFI CCNGG 6 cut(s) 253, 303, 340, 665, 992, 1361
SduI GDGCHC 1 cut(s) 736
SfaNI GCATC 5 cut(s) 110, 265, 688, 885, 929
SfcI CTRYAG 1 cut(s) 1066
SfuI TTCGAA 2 cut(s) 412, 1198
SinI GGWCC 2 cut(s) 4, 1072
SmiMI CAYNNNNRTG 1 cut(s) 950
Sse9I AATT 8 cut(s) 408, 467, 515, 643, 971, 1128, 1194, 1355
SsiI CCGC 1 cut(s) 650
SspI AATATT 2 cut(s) 826, 1344
SspMI CTAG 2 cut(s) 83, 192
SstI GAGCTC 1 cut(s) 736
StyD4I CCNGG 6 cut(s) 251, 301, 338, 663, 990, 1359
StyI CCWWGG 2 cut(s) 159, 945
TaaI ACNGT 2 cut(s) 153, 1327
TaiI ACGT 1 cut(s) 776
TaqI TCGA 5 cut(s) 111, 354, 412, 456, 1198
TasI AATT 8 cut(s) 408, 467, 515, 643, 971, 1128, 1194, 1355
TatI WGTACW 3 cut(s) 51, 1327, 1382
Tru1I TTAA 2 cut(s) 216, 1346
Tru9I TTAA 2 cut(s) 216, 1346
TscAI CASTG 4 cut(s) 696, 849, 1307, 1330
TseFI GTSAC 2 cut(s) 316, 403
TseI GCWGC 8 cut(s) 131, 134, 575, 809, 917, 1121, 1163, 1223
Tsp45I GTSAC 2 cut(s) 316, 403
TspDTI ATGAA 3 cut(s) 516, 1205, 1329
TspGWI ACGGA 2 cut(s) 803, 1051
TspRI CASTG 4 cut(s) 696, 849, 1307, 1330
Tth111I GACNNNGTC 2 cut(s) 452, 1076
VpaK11BI GGWCC 2 cut(s) 4, 1072
XapI RAATTY 3 cut(s) 467, 643, 971
XbaI TCTAGA 1 cut(s) 82
XspI CTAG 2 cut(s) 83, 192
ZrmI AGTACT 1 cut(s) 1384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.