Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006282.1

Orthogroup ID

OG0002877

Physical Location & Seq

Genomic Coordinates Reverse (-)

135950 .. 137982

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006282.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1602 bp

atggagcccaagtgtgagttgggagcaatgacaagttctcatgttctaggaacttctggtgagagtatcatcatcgacagatttagtgatctcccagatgaaattgctcatcacattctttccttccactgtggcatcttaatgaacctcatccgagtgggcgcagtgtccaagagatgcagacaactttatctatcacttccgtctttgattattgtttcaggtcatgtttcaaactgcaccatgtcgagagtaaggttgatgaattattgggataggtacttgtttcatcgtggtgataataagatagagtgctttggcatttgctggtctttcgatgccgcagtcaatgcagagataagtgatgagttttttcgaatcaccacgtggatccaaaatgcagtaaggtgtaatgttaaagtgcttcaccttgaattcactcaaaacaacttgaatatagttgtgttaccatcttgcatctttcattgtcattctttgacggaactctatgtgaacttgagtgggggtgatattcaatcaccctccttgtctttttcaagtaatctccagcacttggagttgaaggatgctatggttgaagatgaccggtttttcgaatggatatcatcttcctgcaaatgcatcaaggaattacgtcttgaaaatgttagtggaataaaagatatcacgattgagagctcgtctttggaaatatttatttatctgtttccttttaacaattatgagctctgggatcttaacatttcaggggagaaacttgaagaaataataatactttggcattttgattcgaatgatgattcaagacgtggtcttatacctcgcatcaggtcgctaaatattctcgccccagagcttaaaaagatcacgtggggtgggaactttctggatcatcagcatcttgggaacttgatgtgcttagaagaagctaagatttttctgttccccgacttagatgacttcaataacccatttgaggttctctgcagtattcgcgtggttaaagctcttgtcctaaacgaagagactacaaaggcttttttcatggaaagttcgatgccattacgattagataatattcatgacttgactttacatgttagaagcgtgaatgatgacttcgtcccagcaatggtctctcttttcagaggaatcactactttgaatactctatgcataacgtctgtcacatacaagcaagcaattgaggaagcgtataatgaaactgaggaagaggataataattatgaggaagaggacaacggaactgagcagaagaatagtgagactacagaagaggatggtgcaactgaggaaggggataatgctcccaagtttgatgtggaatattggaaatcccaaaaccttaattttacttgtgagctaaaggaggtgaaactggagattgtggagggtaataataatgaattggatttagcaaggaacattctggagcatgctcagaaattgaagaaaatggtgattcttcattcaccgcagcatccggatattttggaaatggtaagaaaaagcaagatgatatccactgcaacagtggttttgcaagaagtaatattgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

533

Amino Acids

61.1

Weight (kDa)

4.87

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157031 RchiOBHm_Chr5g0068981 RchiOBHm_Chr5g0069001
rosa_laevigata	RLG00000036027 RLG00000036029
rosa_multiflora	Rmu_sc0000853.1_g000002 Rmu_sc0000853.1_g000004 Rmu_sc0000936.1_g000002 Rmu_sc0006282.1_g000034 Rmu_sc0006282.1_g000035
rosa_roxburghii	Rroxscaffold_1G00011720 Rroxscaffold_1G00011740 Rroxscaffold_1G00029480 Rroxscaffold_3G00231060
rosa_rugosa	Rorug05G0395500 Rorug05G0395600 Rorug07G0214700 Rorug07G0214900
rosa_samantha	Rh2BG537000 Rh2BG537100 Rh2BG537200 Rh2DG545800 Rh2DG545900 Rh2DG546000 Rh5AG452100 Rh5AG452300 Rh5BG471100 Rh5BG471300 Rh5CG493500 Rh5CG493800 Rh5DG483800 Rh5DG484000 Rh7BG348100 Rh7BG348200 Rh7BG348400
rosa_wichuraiana	Rw0G006120 Rw0G006140 Rw2G043220 Rw5G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccII	CGCG	1 cut(s)	1017
AccIII	TCCGGA	1 cut(s)	1525
AciI	CCGC	2 cut(s)	342, 1517
AclWI	GGATC	4 cut(s)	385, 398, 762, 918
AcsI	RAATTY	1 cut(s)	434
AcvI	CACGTG	2 cut(s)	387, 891
AdeI	CACNNNGTG	1 cut(s)	387
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	3 cut(s)	574, 997, 1153
AflIII	ACRYGT	1 cut(s)	1117
AgeI	ACCGGT	1 cut(s)	606
AjiI	CACGTC	1 cut(s)	830
AluBI	AGCT	6 cut(s)	699, 748, 877, 950, 1028, 1405
AluI	AGCT	6 cut(s)	699, 748, 877, 950, 1028, 1405
Alw21I	GWGCWC	2 cut(s)	701, 750
Alw26I	GTCTC	3 cut(s)	1040, 1162, 1301
AlwI	GGATC	4 cut(s)	385, 398, 762, 918
Aor13HI	TCCGGA	1 cut(s)	1525
ApeKI	GCWGC	1 cut(s)	1519
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AsiGI	ACCGGT	1 cut(s)	606
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	9 cut(s)	71, 308, 373, 419, 531, 539, 1426, 1506, 1513
AsuII	TTCGAA	3 cut(s)	376, 615, 812
BamHI	GGATCC	1 cut(s)	390
BanII	GRGCYC	3 cut(s)	9, 701, 750
BbrPI	CACGTG	2 cut(s)	387, 891
Bbv12I	GWGCWC	2 cut(s)	701, 750
BbvI	GCAGC	1 cut(s)	1531
BccI	CCATC	2 cut(s)	478, 1316
BcoDI	GTCTC	3 cut(s)	1040, 1162, 1301
BfaI	CTAG	1 cut(s)	47
BfmI	CTRYAG	2 cut(s)	1006, 1311
BisI	GCNGC	2 cut(s)	342, 1520
BlsI	GCNGC	2 cut(s)	343, 1521
BmgBI	CACGTC	1 cut(s)	830
BmiI	GGNNCC	2 cut(s)	6, 392
BpmI	CTGGAG	3 cut(s)	551, 1442, 1493
Bpu14I	TTCGAA	3 cut(s)	376, 615, 812
BpuEI	CTTGAG	1 cut(s)	538
BsaAI	YACGTR	2 cut(s)	387, 891
BsaI	GGTCTC	1 cut(s)	1162
BsaWI	WCCGGW	2 cut(s)	606, 1525
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	574, 997, 1153
Bse118I	RCCGGY	1 cut(s)	606
Bse1I	ACTGG	1 cut(s)	1425
Bse3DI	GCAATG	2 cut(s)	33, 1158
BseAI	TCCGGA	1 cut(s)	1525
BseGI	GGATG	4 cut(s)	150, 592, 1327, 1522
BseLI	CCNNNNNNNGG	3 cut(s)	574, 997, 1153
BseMI	GCAATG	2 cut(s)	33, 1158
BseMII	CTCAG	4 cut(s)	1239, 1281, 1323, 1496
BseNI	ACTGG	1 cut(s)	1425
BseXI	GCAGC	1 cut(s)	1531
BseYI	CCCAGC	1 cut(s)	1147
BsgI	GTGCAG	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	1017
BshTI	ACCGGT	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	701, 750
BsiSI	CCGG	2 cut(s)	607, 1526
BslFI	GGGAC	1 cut(s)	1130
BslI	CCNNNNNNNGG	3 cut(s)	574, 997, 1153
BsmAI	GTCTC	3 cut(s)	1040, 1162, 1301
BsmFI	GGGAC	1 cut(s)	1130
Bso31I	GGTCTC	1 cut(s)	1162
Bsp119I	TTCGAA	3 cut(s)	376, 615, 812
Bsp1286I	GDGCHC	3 cut(s)	9, 701, 750
Bsp13I	TCCGGA	1 cut(s)	1525
Bsp143I	GATC	5 cut(s)	88, 390, 754, 885, 910
BspACI	CCGC	2 cut(s)	342, 1517
BspCNI	CTCAG	4 cut(s)	1240, 1282, 1324, 1495
BspEI	TCCGGA	1 cut(s)	1525
BspFNI	CGCG	1 cut(s)	1017
BspHI	TCATGA	1 cut(s)	1102
BspLI	GGNNCC	2 cut(s)	6, 392
BspMAI	CTGCAG	1 cut(s)	1010
BspPI	GGATC	4 cut(s)	385, 398, 762, 918
BspT104I	TTCGAA	3 cut(s)	376, 615, 812
BspTNI	GGTCTC	1 cut(s)	1162
BsrDI	GCAATG	2 cut(s)	33, 1158
BsrFI	RCCGGY	1 cut(s)	606
BsrI	ACTGG	1 cut(s)	1425
BssAI	RCCGGY	1 cut(s)	606
BssMI	GATC	5 cut(s)	88, 390, 754, 885, 910
Bst4CI	ACNGT	2 cut(s)	131, 1576
Bst6I	CTCTTC	4 cut(s)	1038, 1248, 1269, 1311
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	2 cut(s)	387, 891
BstBI	TTCGAA	3 cut(s)	376, 615, 812
BstC8I	GCNNGC	2 cut(s)	1221, 1479
BstDEI	CTNAG	7 cut(s)	940, 951, 973, 1248, 1290, 1332, 1482
BstF5I	GGATG	4 cut(s)	150, 592, 1327, 1522
BstFNI	CGCG	1 cut(s)	1017
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	5 cut(s)	91, 393, 757, 888, 913
BstMAI	GTCTC	3 cut(s)	1040, 1162, 1301
BstMBI	GATC	5 cut(s)	88, 390, 754, 885, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 1014
BstNSI	RCATGY	2 cut(s)	1121, 1481
BstSFI	CTRYAG	2 cut(s)	1006, 1311
BstUI	CGCG	1 cut(s)	1017
BstV1I	GCAGC	1 cut(s)	1531
BstX2I	RGATCY	2 cut(s)	390, 754
BstYI	RGATCY	2 cut(s)	390, 754
BtrI	CACGTC	1 cut(s)	830
BtsCI	GGATG	4 cut(s)	150, 592, 1327, 1522
BtsI	GCAGTG	2 cut(s)	171, 1566
BtsIMutI	CAGTG	4 cut(s)	127, 171, 1566, 1581
Cac8I	GCNNGC	2 cut(s)	1221, 1479
CciI	TCATGA	1 cut(s)	1102
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	606
Csp6I	GTAC	1 cut(s)	280
CspAI	ACCGGT	1 cut(s)	606
CviAII	CATG	7 cut(s)	41, 227, 244, 1066, 1103, 1118, 1478
CviJI	RGCY	8 cut(s)	7, 699, 748, 877, 950, 1028, 1058, 1405
CviKI_1	RGCY	8 cut(s)	7, 699, 748, 877, 950, 1028, 1058, 1405
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	7 cut(s)	940, 951, 973, 1248, 1290, 1332, 1482
DpnI	GATC	5 cut(s)	90, 392, 756, 887, 912
DpnII	GATC	5 cut(s)	88, 390, 754, 885, 910
DraIII	CACNNNGTG	1 cut(s)	387
Eam1104I	CTCTTC	4 cut(s)	1038, 1248, 1269, 1311
EarI	CTCTTC	4 cut(s)	1038, 1248, 1269, 1311
Ecl136II	GAGCTC	2 cut(s)	699, 748
Eco24I	GRGCYC	3 cut(s)	9, 701, 750
Eco31I	GGTCTC	1 cut(s)	1162
Eco32I	GATATC	3 cut(s)	624, 685, 1563
Eco53kI	GAGCTC	2 cut(s)	699, 748
Eco72I	CACGTG	2 cut(s)	387, 891
EcoICRI	GAGCTC	2 cut(s)	699, 748
EcoRI	GAATTC	1 cut(s)	434
EcoRV	GATATC	3 cut(s)	624, 685, 1563
EcoT22I	ATGCAT	2 cut(s)	644, 1199
EcoT38I	GRGCYC	3 cut(s)	9, 701, 750
FaeI	CATG	7 cut(s)	44, 230, 247, 1069, 1106, 1121, 1481
FaqI	GGGAC	1 cut(s)	1130
FatI	CATG	7 cut(s)	40, 226, 243, 1065, 1102, 1117, 1477
Fnu4HI	GCNGC	2 cut(s)	342, 1520
FokI	GGATG	4 cut(s)	137, 599, 1334, 1509
FriOI	GRGCYC	3 cut(s)	9, 701, 750
Fsp4HI	GCNGC	2 cut(s)	342, 1520
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	342, 1520
GsaI	CCCAGC	1 cut(s)	1151
GsuI	CTGGAG	3 cut(s)	551, 1442, 1493
HapII	CCGG	2 cut(s)	607, 1526
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	7 cut(s)	44, 230, 247, 1069, 1106, 1121, 1481
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	5 cut(s)	378, 809, 821, 1173, 1504
HpaII	CCGG	2 cut(s)	607, 1526
HphI	GGTGA	9 cut(s)	71, 308, 373, 419, 531, 539, 1426, 1506, 1513
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	155, 1169, 1485
Hpy188III	TCNNGA	8 cut(s)	249, 659, 688, 825, 908, 1103, 1472, 1526
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	3 cut(s)	133, 577, 1331
HpyCH4III	ACNGT	2 cut(s)	131, 1576
HpyCH4IV	ACGT	5 cut(s)	386, 655, 829, 890, 1202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 1014
HpyF3I	CTNAG	7 cut(s)	940, 951, 973, 1248, 1290, 1332, 1482
HpySE526I	ACGT	5 cut(s)	386, 655, 829, 890, 1202
Hsp92II	CATG	7 cut(s)	44, 230, 247, 1069, 1106, 1121, 1481
HspAI	GCGC	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	1525
Kzo9I	GATC	5 cut(s)	88, 390, 754, 885, 910
LmnI	GCTCC	4 cut(s)	4, 23, 1354, 1474
Lsp1109I	GCAGC	1 cut(s)	1531
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	5 cut(s)	386, 655, 829, 890, 1202
MaeIII	GTNAC	2 cut(s)	465, 1207
MalI	GATC	5 cut(s)	90, 392, 756, 887, 912
MboI	GATC	5 cut(s)	88, 390, 754, 885, 910
MfeI	CAATTG	1 cut(s)	1224
MflI	RGATCY	2 cut(s)	390, 754
MhlI	GDGCHC	3 cut(s)	9, 701, 750
Mph1103I	ATGCAT	2 cut(s)	644, 1199
MroI	TCCGGA	1 cut(s)	1525
MseI	TTAA	7 cut(s)	140, 417, 735, 759, 879, 1023, 1389
MslI	CAYNNNNRTG	3 cut(s)	140, 155, 294
MspI	CCGG	2 cut(s)	607, 1526
MunI	CAATTG	1 cut(s)	1224
MvnI	CGCG	1 cut(s)	1017
MwoI	GCNNNNNNNGC	2 cut(s)	350, 1014
NdeII	GATC	5 cut(s)	88, 390, 754, 885, 910
NlaIII	CATG	7 cut(s)	44, 230, 247, 1069, 1106, 1121, 1481
NlaIV	GGNNCC	2 cut(s)	6, 392
NmuCI	GTSAC	1 cut(s)	1207
NsiI	ATGCAT	2 cut(s)	644, 1199
NspI	RCATGY	2 cut(s)	1121, 1481
NspV	TTCGAA	3 cut(s)	376, 615, 812
PaeI	GCATGC	1 cut(s)	1481
PagI	TCATGA	1 cut(s)	1102
PciI	ACATGT	1 cut(s)	1117
PfeI	GAWTC	5 cut(s)	378, 809, 821, 1173, 1504
PflFI	GACNNNGTC	2 cut(s)	831, 1142
PflMI	CCANNNNNTGG	1 cut(s)	574
PinAI	ACCGGT	1 cut(s)	606
PkrI	GCNGC	2 cut(s)	343, 1521
PmaCI	CACGTG	2 cut(s)	387, 891
PmlI	CACGTG	2 cut(s)	387, 891
Ppu21I	YACGTR	2 cut(s)	387, 891
PscI	ACATGT	1 cut(s)	1117
Psp124BI	GAGCTC	2 cut(s)	701, 750
PspCI	CACGTG	2 cut(s)	387, 891
PspFI	CCCAGC	1 cut(s)	1147
PspN4I	GGNNCC	2 cut(s)	6, 392
PstI	CTGCAG	1 cut(s)	1010
PsuI	RGATCY	2 cut(s)	390, 754
PsyI	GACNNNGTC	2 cut(s)	831, 1142
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	3 cut(s)	140, 155, 294
SacI	GAGCTC	2 cut(s)	701, 750
SaqAI	TTAA	7 cut(s)	140, 417, 735, 759, 879, 1023, 1389
SatI	GCNGC	2 cut(s)	342, 1520
Sau3AI	GATC	5 cut(s)	88, 390, 754, 885, 910
SduI	GDGCHC	3 cut(s)	9, 701, 750
SfcI	CTRYAG	2 cut(s)	1006, 1311
SfuI	TTCGAA	3 cut(s)	376, 615, 812
SmiMI	CAYNNNNRTG	3 cut(s)	140, 155, 294
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
SphI	GCATGC	1 cut(s)	1481
SsiI	CCGC	2 cut(s)	342, 1517
SspI	AATATT	5 cut(s)	714, 862, 1099, 1370, 1596
SspMI	CTAG	1 cut(s)	47
SstI	GAGCTC	2 cut(s)	701, 750
TaaI	ACNGT	2 cut(s)	131, 1576
TaiI	ACGT	5 cut(s)	389, 658, 832, 893, 1205
TaqI	TCGA	7 cut(s)	75, 248, 336, 376, 615, 812, 1076
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	5 cut(s)	378, 809, 821, 1173, 1504
Tru1I	TTAA	7 cut(s)	140, 417, 735, 759, 879, 1023, 1389
Tru9I	TTAA	7 cut(s)	140, 417, 735, 759, 879, 1023, 1389
TscAI	CASTG	4 cut(s)	134, 171, 1573, 1581
TseFI	GTSAC	1 cut(s)	1207
TseI	GCWGC	1 cut(s)	1519
Tsp45I	GTSAC	1 cut(s)	1207
TspGWI	ACGGA	3 cut(s)	192, 515, 1299
TspRI	CASTG	4 cut(s)	134, 171, 1573, 1581
Tth111I	GACNNNGTC	2 cut(s)	831, 1142
Van91I	CCANNNNNTGG	1 cut(s)	574
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	2 cut(s)	1121, 1481
XcmI	CCANNNNNNNNNTGG	3 cut(s)	16, 1360, 1573
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	2 cut(s)	644, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.