Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002877

Physical Location & Seq

Genomic Coordinates Forward (+)

69601631 .. 69603680

Gene Structure 2050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGACAAGTTGTCAAGTTCAAGGAGCTTCTAGTGAGAGTATAATGATGGACAGATTCAGTGATCTCCCAGATGAAATTTCTCATCATATTATTTCGTTCCTCTCTGACTCTTTAAGGAACCTCATTCAAGTGGGAGCTGTGTCCAAAAGATGTAGGAAACTTTATCTGTCAGTTCCATCAATAATTATTGATGCAAGTAGCGTTGCAGATTGCACCAAGTTGCGAGTAAGATTGTTGAACTCTTGGGATAGGTACTTGTTTCACCGTGGTAATAATAAGATTGAGCGCCTTAGTATTTACTGGGTTTTCAGAACCTCTTGGGAGGCAAAGATAAGTGATGAGTATTTCCGAGTCACCACATGGATCCAAAATGCAGTGAGGTGTAATGTTGAAGTACTTCACCTTGATCTGAATCAATACGACCTCAGGATGACAGTTGTGTTGCCGTCTTGCATCTTCCTTTGTCGTTCTTTGAGGACTCTATCTGTGAATTTGTATATGGGCAAGATTCAGTCACCCAACTTGTCTTTTTCCTGTAATCTCCACTACTTGAAGTTGAAGTATGTACGTCTTAAAGATGACTGTATTTTCAAATGGATCTCATATTCCTGCAAATGCATAAAGGAATTACATCTTGAAAAAGTTATTGGGATAAAAGATATCAAGATTGAGAGCTCGTCTTTGGAATCGTTTAGTCTTTTGCTTCCTTTTCAGAATTATGAGCTCTGGGATCTTAGCATTTCAGCTGAAAAACTTGAAGATATATGTATACACTGGCAATTTGATTCGAGACCTGACATATTTCTGATGCCCGATTTAGATGATTCTAGCAACCTATTTGAGGTTCTTTGCAGCATATGTATGGTTAAAGTTCTAACCCTAAATGAAGAAACTACAAAGGCTTTATGCAGGGGAGGTTCCATGCCGGTACCATTAGATAGTATTCGTTACTTGAGTTTGCATGTTACAAGTCTGAATGCTGACTTGGTCGCGGCAATGGTGTCTATTTTTAGAGGAATTACTTCTTTGAATACTTTGTGCATAATGTCTGACCTATCCAAGTCATCTGAATCCAGGTTCAATGTGGAATACTGGAAATCCCAAAACCTAACCTTTATTTATCAGCTCAAGGAAGTGAGAATAGACCTTCTAGATGGTAATAATGAATTGGAGTTCGCAAGGTATATTCTGGAGAATGCTCGGAGTTTGGAGAAAATGGTCATAATTCAATCACCCCAGCATTCGGATGTTGTGGAGATGGTAACCAAAAGCAAGATGATTTCCAATGCGACAGTTGTTTTACAAGAAAGGCAGAGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

440

Amino Acids

50.74

Weight (kDa)

6.52

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	119 - 347	1.4e-06	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	387 - 408	3.3e-06	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157031 RchiOBHm_Chr5g0068981 RchiOBHm_Chr5g0069001
rosa_laevigata	RLG00000036027 RLG00000036029
rosa_multiflora	Rmu_sc0000853.1_g000002 Rmu_sc0000853.1_g000004 Rmu_sc0000936.1_g000002 Rmu_sc0006282.1_g000034 Rmu_sc0006282.1_g000035
rosa_roxburghii	Rroxscaffold_1G00011720 Rroxscaffold_1G00011740 Rroxscaffold_1G00029480 Rroxscaffold_3G00231060
rosa_rugosa	Rorug05G0395500 Rorug05G0395600 Rorug07G0214700 Rorug07G0214900
rosa_samantha	Rh2BG537000 Rh2BG537100 Rh2BG537200 Rh2DG545800 Rh2DG545900 Rh2DG546000 Rh5AG452100 Rh5AG452300 Rh5BG471100 Rh5BG471300 Rh5CG493500 Rh5CG493800 Rh5DG483800 Rh5DG484000 Rh7BG348100 Rh7BG348200 Rh7BG348400
rosa_wichuraiana	Rw0G006120 Rw0G006140 Rw2G043220 Rw5G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	928
AccB1I	GGYRCC	1 cut(s)	928
AccI	GTMKAC	1 cut(s)	769
AccII	CGCG	1 cut(s)	992
AciI	CCGC	1 cut(s)	992
AclWI	GGATC	4 cut(s)	358, 371, 605, 738
AcsI	RAATTY	2 cut(s)	75, 490
AfaI	GTAC	4 cut(s)	254, 396, 567, 930
AfiI	CCNNNNNNNGG	2 cut(s)	841, 1243
AhdI	GACNNNNNGTC	1 cut(s)	9
AjnI	CCWGG	1 cut(s)	1073
AjuI	GAANNNNNNNTTGG	4 cut(s)	630, 662, 968, 1000
AluBI	AGCT	6 cut(s)	26, 137, 675, 724, 746, 1126
AluI	AGCT	6 cut(s)	26, 137, 675, 724, 746, 1126
Alw21I	GWGCWC	2 cut(s)	677, 726
Alw26I	GTCTC	1 cut(s)	784
AlwI	GGATC	4 cut(s)	358, 371, 605, 738
ApeKI	GCWGC	1 cut(s)	852
ApoI	RAATTY	2 cut(s)	75, 490
Asp700I	GAANNNNTTC	2 cut(s)	396, 1021
Asp718I	GGTACC	1 cut(s)	928
AspLEI	GCGC	1 cut(s)	288
AsuHPI	GGTGA	5 cut(s)	254, 346, 392, 507, 1224
AxyI	CCTNAGG	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	928
BanII	GRGCYC	2 cut(s)	677, 726
Bbv12I	GWGCWC	2 cut(s)	677, 726
BbvI	GCAGC	1 cut(s)	864
BccI	CCATC	4 cut(s)	40, 184, 1148, 1252
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	1075
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	3 cut(s)	30, 828, 1151
BfoI	RGCGCY	1 cut(s)	289
BisI	GCNGC	2 cut(s)	853, 993
BlsI	GCNGC	2 cut(s)	854, 994
BmcAI	AGTACT	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	1075
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmiI	GGNNCC	4 cut(s)	119, 365, 919, 930
BmrFI	CCNGG	1 cut(s)	1075
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	3 cut(s)	181, 462, 798
BmuI	ACTGGG	1 cut(s)	310
BpmI	CTGGAG	1 cut(s)	1211
BpuEI	CTTGAG	2 cut(s)	973, 1112
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	784
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	841, 1243
Bse118I	RCCGGY	1 cut(s)	925
Bse1I	ACTGG	3 cut(s)	305, 779, 1097
Bse21I	CCTNAGG	1 cut(s)	425
Bse3DI	GCAATG	1 cut(s)	1002
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	1075
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	435, 1252
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	2 cut(s)	841, 1243
BseMI	GCAATG	1 cut(s)	1002
BseMII	CTCAG	1 cut(s)	439
BseNI	ACTGG	3 cut(s)	305, 779, 1097
BseXI	GCAGC	1 cut(s)	864
BseYI	CCCAGC	1 cut(s)	1236
Bsh1236I	CGCG	1 cut(s)	992
BshNI	GGYRCC	1 cut(s)	928
BsiHKAI	GWGCWC	2 cut(s)	677, 726
BsiSI	CCGG	1 cut(s)	926
BslI	CCNNNNNNNGG	2 cut(s)	841, 1243
BsmAI	GTCTC	1 cut(s)	784
BsmI	GAATGC	3 cut(s)	982, 1201, 1240
Bso31I	GGTCTC	1 cut(s)	784
Bsp1286I	GDGCHC	2 cut(s)	677, 726
Bsp143I	GATC	5 cut(s)	61, 363, 406, 597, 730
BspACI	CCGC	1 cut(s)	992
BspCNI	CTCAG	1 cut(s)	438
BspFNI	CGCG	1 cut(s)	992
BspLI	GGNNCC	4 cut(s)	119, 365, 919, 930
BspPI	GGATC	4 cut(s)	358, 371, 605, 738
BspT107I	GGYRCC	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	784
BsrDI	GCAATG	1 cut(s)	1002
BsrFI	RCCGGY	1 cut(s)	925
BsrI	ACTGG	3 cut(s)	305, 779, 1097
BssAI	RCCGGY	1 cut(s)	925
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	5 cut(s)	61, 363, 406, 597, 730
BssNAI	GTATAC	1 cut(s)	770
Bst1107I	GTATAC	1 cut(s)	770
Bst2UI	CCWGG	1 cut(s)	1075
Bst4CI	ACNGT	4 cut(s)	266, 436, 584, 1294
BstDEI	CTNAG	3 cut(s)	290, 425, 734
BstDSI	CCRYGG	1 cut(s)	265
BstEII	GGTNACC	1 cut(s)	1261
BstENI	CCTNNNNNAGG	1 cut(s)	839
BstF5I	GGATG	2 cut(s)	435, 1252
BstFNI	CGCG	1 cut(s)	992
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	5 cut(s)	64, 366, 409, 600, 733
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	5 cut(s)	61, 363, 406, 597, 730
BstNI	CCWGG	1 cut(s)	1075
BstNSI	RCATGY	1 cut(s)	965
BstPI	GGTNACC	1 cut(s)	1261
BstSCI	CCNGG	1 cut(s)	1073
BstUI	CGCG	1 cut(s)	992
BstV1I	GCAGC	1 cut(s)	864
BstX2I	RGATCY	3 cut(s)	363, 597, 730
BstYI	RGATCY	3 cut(s)	363, 597, 730
BstZ17I	GTATAC	1 cut(s)	770
Bsu36I	CCTNAGG	1 cut(s)	425
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	435, 1252
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	64, 381, 772
CfoI	GCGC	1 cut(s)	288
Cfr10I	RCCGGY	1 cut(s)	925
Csp6I	GTAC	4 cut(s)	253, 395, 566, 929
CviAII	CATG	3 cut(s)	360, 922, 962
CviJI	RGCY	7 cut(s)	26, 137, 675, 724, 746, 902, 1126
CviKI_1	RGCY	7 cut(s)	26, 137, 675, 724, 746, 902, 1126
CviQI	GTAC	4 cut(s)	253, 395, 566, 929
DdeI	CTNAG	3 cut(s)	290, 425, 734
DpnI	GATC	5 cut(s)	63, 365, 408, 599, 732
DpnII	GATC	5 cut(s)	61, 363, 406, 597, 730
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	9
Ecl136II	GAGCTC	2 cut(s)	675, 724
Eco24I	GRGCYC	2 cut(s)	677, 726
Eco31I	GGTCTC	1 cut(s)	784
Eco32I	GATATC	1 cut(s)	661
Eco53kI	GAGCTC	2 cut(s)	675, 724
Eco81I	CCTNAGG	1 cut(s)	425
Eco91I	GGTNACC	1 cut(s)	1261
EcoICRI	GAGCTC	2 cut(s)	675, 724
EcoNI	CCTNNNNNAGG	1 cut(s)	839
EcoO65I	GGTNACC	1 cut(s)	1261
EcoRII	CCWGG	1 cut(s)	1073
EcoRV	GATATC	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	620
EcoT38I	GRGCYC	2 cut(s)	677, 726
FaeI	CATG	3 cut(s)	363, 925, 965
FatI	CATG	3 cut(s)	359, 921, 961
FauNDI	CATATG	1 cut(s)	857
FblI	GTMKAC	1 cut(s)	769
Fnu4HI	GCNGC	2 cut(s)	853, 993
FokI	GGATG	2 cut(s)	442, 1259
FriOI	GRGCYC	2 cut(s)	677, 726
Fsp4HI	GCNGC	2 cut(s)	853, 993
FspBI	CTAG	3 cut(s)	30, 828, 1151
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	2 cut(s)	853, 993
GsaI	CCCAGC	1 cut(s)	1240
GsuI	CTGGAG	1 cut(s)	1211
HaeII	RGCGCY	1 cut(s)	289
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	363, 925, 965
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	5 cut(s)	254, 346, 392, 507, 1224
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188III	TCNNGA	6 cut(s)	427, 635, 664, 789, 1151, 1190
Hpy8I	GTNNAC	1 cut(s)	770
HpyAV	CCTTC	1 cut(s)	1157
HpyCH4III	ACNGT	4 cut(s)	266, 436, 584, 1294
HpyCH4IV	ACGT	1 cut(s)	568
HpyF3I	CTNAG	3 cut(s)	290, 425, 734
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	3 cut(s)	363, 925, 965
HspAI	GCGC	1 cut(s)	286
KpnI	GGTACC	1 cut(s)	932
Kzo9I	GATC	5 cut(s)	61, 363, 406, 597, 730
LmnI	GCTCC	2 cut(s)	23, 134
Lsp1109I	GCAGC	1 cut(s)	864
LweI	GCATC	3 cut(s)	181, 462, 798
MaeI	CTAG	3 cut(s)	30, 828, 1151
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	5 cut(s)	352, 513, 947, 964, 1261
MalI	GATC	5 cut(s)	63, 365, 408, 599, 732
MboI	GATC	5 cut(s)	61, 363, 406, 597, 730
MboII	GAAGA	3 cut(s)	448, 770, 899
MflI	RGATCY	3 cut(s)	363, 597, 730
MhlI	GDGCHC	2 cut(s)	677, 726
MluCI	AATT	9 cut(s)	75, 183, 490, 626, 715, 779, 1017, 1166, 1224
MlyI	GAGTC	3 cut(s)	101, 360, 472
Mph1103I	ATGCAT	1 cut(s)	620
MroXI	GAANNNNTTC	2 cut(s)	396, 1021
MseI	TTAA	3 cut(s)	113, 573, 867
MslI	CAYNNNNRTG	3 cut(s)	128, 860, 1245
MspA1I	CMGCKG	1 cut(s)	746
MspI	CCGG	1 cut(s)	926
MspR9I	CCNGG	1 cut(s)	1075
Mva1269I	GAATGC	3 cut(s)	982, 1201, 1240
MvaI	CCWGG	1 cut(s)	1075
MvnI	CGCG	1 cut(s)	992
NdeI	CATATG	1 cut(s)	857
NdeII	GATC	5 cut(s)	61, 363, 406, 597, 730
NlaIII	CATG	3 cut(s)	363, 925, 965
NlaIV	GGNNCC	4 cut(s)	119, 365, 919, 930
NmuCI	GTSAC	2 cut(s)	352, 513
NsiI	ATGCAT	1 cut(s)	620
NspI	RCATGY	1 cut(s)	965
PctI	GAATGC	3 cut(s)	982, 1201, 1240
PdmI	GAANNNNTTC	2 cut(s)	396, 1021
PfeI	GAWTC	7 cut(s)	54, 412, 508, 686, 785, 824, 1070
PflFI	GACNNNGTC	1 cut(s)	986
PkrI	GCNGC	2 cut(s)	854, 994
PleI	GAGTC	3 cut(s)	101, 359, 472
PpsI	GAGTC	3 cut(s)	101, 359, 472
Psp124BI	GAGCTC	2 cut(s)	677, 726
Psp6I	CCWGG	1 cut(s)	1073
PspEI	GGTNACC	1 cut(s)	1261
PspFI	CCCAGC	1 cut(s)	1236
PspGI	CCWGG	1 cut(s)	1073
PspN4I	GGNNCC	4 cut(s)	119, 365, 919, 930
PsuI	RGATCY	3 cut(s)	363, 597, 730
PsyI	GACNNNGTC	1 cut(s)	986
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	4 cut(s)	254, 396, 567, 930
RsaNI	GTAC	4 cut(s)	253, 395, 566, 929
RseI	CAYNNNNRTG	3 cut(s)	128, 860, 1245
SacI	GAGCTC	2 cut(s)	677, 726
SaqAI	TTAA	3 cut(s)	113, 573, 867
SatI	GCNGC	2 cut(s)	853, 993
Sau3AI	GATC	5 cut(s)	61, 363, 406, 597, 730
ScaI	AGTACT	1 cut(s)	396
SchI	GAGTC	3 cut(s)	101, 360, 472
ScrFI	CCNGG	1 cut(s)	1075
SduI	GDGCHC	2 cut(s)	677, 726
SfaNI	GCATC	3 cut(s)	181, 462, 798
SmiMI	CAYNNNNRTG	3 cut(s)	128, 860, 1245
SmlI	CTYRAG	2 cut(s)	952, 1127
SmoI	CTYRAG	2 cut(s)	952, 1127
Sse9I	AATT	9 cut(s)	75, 183, 490, 626, 715, 779, 1017, 1166, 1224
SsiI	CCGC	1 cut(s)	992
SspMI	CTAG	3 cut(s)	30, 828, 1151
SstI	GAGCTC	2 cut(s)	677, 726
StyD4I	CCNGG	1 cut(s)	1073
TaaI	ACNGT	4 cut(s)	266, 436, 584, 1294
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	1 cut(s)	788
TasI	AATT	9 cut(s)	75, 183, 490, 626, 715, 779, 1017, 1166, 1224
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	995
TfiI	GAWTC	7 cut(s)	54, 412, 508, 686, 785, 824, 1070
Tru1I	TTAA	3 cut(s)	113, 573, 867
Tru9I	TTAA	3 cut(s)	113, 573, 867
TscAI	CASTG	3 cut(s)	64, 381, 779
TseFI	GTSAC	2 cut(s)	352, 513
TseI	GCWGC	1 cut(s)	852
Tsp45I	GTSAC	2 cut(s)	352, 513
TspDTI	ATGAA	3 cut(s)	87, 900, 1179
TspRI	CASTG	3 cut(s)	64, 381, 779
Tth111I	GACNNNGTC	1 cut(s)	986
XagI	CCTNNNNNAGG	1 cut(s)	839
XapI	RAATTY	2 cut(s)	75, 490
XbaI	TCTAGA	1 cut(s)	1150
XceI	RCATGY	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1081
XmiI	GTMKAC	1 cut(s)	769
XmnI	GAANNNNTTC	2 cut(s)	396, 1021
XspI	CTAG	3 cut(s)	30, 828, 1151
ZrmI	AGTACT	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.