Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00235

Orthogroup ID

OG0002877

Physical Location & Seq

Genomic Coordinates Forward (+)

165436 .. 168302

Gene Structure 2867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGGAGCCCAAGTGTGAGTTAGGAGCAATGACAAGTTCTCATGTTCTAGGAACTTCTAGTGAGAGTATCATCATCGACAGATTTAGTGATCTCCCAGATGAAATTGCTCATCATATTCTTTCCTTCCACAGTGGCATCTTAATGAACCTCATCCGAGTGGGTGCAGTGTCCAAGAGATGCAGACAACTTTATCTATCACTTCCGTCTTTGATTATTGTTTCAGGTCATGTTTCAAACTGCACCATGTCGAGAGTAAGGTTGATGAATTATTGGGATAGGTACTTGTTTCATCGTGGTGATAATAAGATAGAGTGCTTTGGCATTTGCTGGTCTTTCGATGCCGCAGTCAATGCAGAGATAATTGTGTTACCATCTTGCATCTTTCATTGTCATTCTTTGACGGAACTCTATGTGAACTTGAGTGGGGGTGATATTCAATCACCCTCCTTGTCTTTTTCAAGTAATCTCCAGCACTTGGAGTTGAAGGATGCGATGGTTGAAGATGACCGGTTTTTCGAATGGATATCATCTTCCTGCAAATGCATCAAGGAATTACGTCTTGAAAATGTTAGTGGAATAAAAGATATCACGATTGAGAGCTCGTCTTTGGAAATATTTATTTATCTGTTTCCTTTTAACAATTATGAGCTCTGGGATCTTAACATTTCAGGGGAGAAACTTGAAGAAATAATAATACTTTGGCATTTTGATTCGAATGATGATTCAAGACGTGGTCTTATACCTCGCATCAGGTCGCTAAATATTCTCGCCCCAAAGCTTAAAAAGATCACGTGGGGTGGGAACTTTCTGGATCATCAGCATCTTGGGAACTTGATGTGCTTAGAAGAAGCTAAGATTTTTCTGTTCCCCGACTTAGATGACTTCAATAACCCATTTGAGGTTCTCTGCAGTATTCGCGTGGTTAAAGCTCTTGTCCTAAACGAAGAGACTACAAAGGCTTTTTTCATGGAAAGTTCGATGCCATTACGATTAGATAATATTCATGACTTGACTTTACATGTTAGAAGCGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTACTTTGAATACTCTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTATAATGAAACTGAGGAAGAGGATAATAATTATGAGGAAGAGGACAACGGAACTGAGCAGAAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAATGCTCCCAAGTTTGATGTGGAATATTGGAAATCCCAAAACCCTAATTTTACTTGTGAGCTAAAGGAGGTGAAACTGGAGATTGTGGAGGGTAATAATAATGAATTGGATTTAGCAAGGTACATTCTGGAGCATGCTCAGAAATTGAAGAAAATGGTGATTCTTCATTCACCGCAGCATCCGGATATTTTGGAAATGGTAAGAAAAAGCAAGATGATATCCACTGCAACAGTGGTTTTGCAAGAAGTAATATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

500

Amino Acids

57.22

Weight (kDa)

4.87

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	122 - 269	1.6e-07	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	436 - 469	3e-07	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157031 RchiOBHm_Chr5g0068981 RchiOBHm_Chr5g0069001
rosa_laevigata	RLG00000036027 RLG00000036029
rosa_multiflora	Rmu_sc0000853.1_g000002 Rmu_sc0000853.1_g000004 Rmu_sc0000936.1_g000002 Rmu_sc0006282.1_g000034 Rmu_sc0006282.1_g000035
rosa_roxburghii	Rroxscaffold_1G00011720 Rroxscaffold_1G00011740 Rroxscaffold_1G00029480 Rroxscaffold_3G00231060
rosa_rugosa	Rorug05G0395500 Rorug05G0395600 Rorug07G0214700 Rorug07G0214900
rosa_samantha	Rh2BG537000 Rh2BG537100 Rh2BG537200 Rh2DG545800 Rh2DG545900 Rh2DG546000 Rh5AG452100 Rh5AG452300 Rh5BG471100 Rh5BG471300 Rh5CG493500 Rh5CG493800 Rh5DG483800 Rh5DG484000 Rh7BG348100 Rh7BG348200 Rh7BG348400
rosa_wichuraiana	Rw0G006120 Rw0G006140 Rw2G043220 Rw5G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccII	CGCG	1 cut(s)	918
AccIII	TCCGGA	1 cut(s)	1426
AciI	CCGC	2 cut(s)	342, 1418
AclWI	GGATC	2 cut(s)	663, 819
AcvI	CACGTG	1 cut(s)	792
AfaI	GTAC	2 cut(s)	281, 1367
AfiI	CCNNNNNNNGG	3 cut(s)	475, 898, 1054
AflIII	ACRYGT	1 cut(s)	1018
AgeI	ACCGGT	1 cut(s)	507
AjiI	CACGTC	1 cut(s)	731
AluBI	AGCT	6 cut(s)	600, 649, 778, 851, 929, 1306
AluI	AGCT	6 cut(s)	600, 649, 778, 851, 929, 1306
Alw21I	GWGCWC	2 cut(s)	602, 651
Alw26I	GTCTC	3 cut(s)	941, 1063, 1202
AlwI	GGATC	2 cut(s)	663, 819
Aor13HI	TCCGGA	1 cut(s)	1426
ApeKI	GCWGC	1 cut(s)	1420
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
AsiGI	ACCGGT	1 cut(s)	507
AsuHPI	GGTGA	6 cut(s)	308, 432, 440, 1327, 1407, 1414
AsuII	TTCGAA	2 cut(s)	516, 713
BanII	GRGCYC	3 cut(s)	9, 602, 651
BbrPI	CACGTG	1 cut(s)	792
Bbv12I	GWGCWC	2 cut(s)	602, 651
BbvI	GCAGC	1 cut(s)	1432
BccI	CCATC	3 cut(s)	379, 487, 1217
BcoDI	GTCTC	3 cut(s)	941, 1063, 1202
BfaI	CTAG	2 cut(s)	47, 57
BfmI	CTRYAG	2 cut(s)	907, 1212
BisI	GCNGC	2 cut(s)	342, 1421
BlsI	GCNGC	2 cut(s)	343, 1422
BmgBI	CACGTC	1 cut(s)	731
BmiI	GGNNCC	1 cut(s)	6
BpmI	CTGGAG	3 cut(s)	452, 1343, 1394
Bpu14I	TTCGAA	2 cut(s)	516, 713
BpuEI	CTTGAG	1 cut(s)	439
BsaAI	YACGTR	1 cut(s)	792
BsaI	GGTCTC	1 cut(s)	1063
BsaWI	WCCGGW	2 cut(s)	507, 1426
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	475, 898, 1054
Bse118I	RCCGGY	1 cut(s)	507
Bse1I	ACTGG	1 cut(s)	1326
Bse3DI	GCAATG	2 cut(s)	33, 1059
BseAI	TCCGGA	1 cut(s)	1426
BseGI	GGATG	4 cut(s)	150, 493, 1228, 1423
BseLI	CCNNNNNNNGG	3 cut(s)	475, 898, 1054
BseMI	GCAATG	2 cut(s)	33, 1059
BseMII	CTCAG	4 cut(s)	1140, 1182, 1224, 1397
BseNI	ACTGG	1 cut(s)	1326
BseXI	GCAGC	1 cut(s)	1432
BseYI	CCCAGC	1 cut(s)	1048
BsgI	GTGCAG	2 cut(s)	183, 223
Bsh1236I	CGCG	1 cut(s)	918
BshTI	ACCGGT	1 cut(s)	507
BsiHKAI	GWGCWC	2 cut(s)	602, 651
BsiSI	CCGG	2 cut(s)	508, 1427
BslFI	GGGAC	1 cut(s)	1031
BslI	CCNNNNNNNGG	3 cut(s)	475, 898, 1054
BsmAI	GTCTC	3 cut(s)	941, 1063, 1202
BsmFI	GGGAC	1 cut(s)	1031
Bso31I	GGTCTC	1 cut(s)	1063
Bsp119I	TTCGAA	2 cut(s)	516, 713
Bsp1286I	GDGCHC	3 cut(s)	9, 602, 651
Bsp13I	TCCGGA	1 cut(s)	1426
Bsp143I	GATC	4 cut(s)	88, 655, 786, 811
BspACI	CCGC	2 cut(s)	342, 1418
BspCNI	CTCAG	4 cut(s)	1141, 1183, 1225, 1396
BspEI	TCCGGA	1 cut(s)	1426
BspFNI	CGCG	1 cut(s)	918
BspHI	TCATGA	1 cut(s)	1003
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	911
BspPI	GGATC	2 cut(s)	663, 819
BspT104I	TTCGAA	2 cut(s)	516, 713
BspTNI	GGTCTC	1 cut(s)	1063
BsrDI	GCAATG	2 cut(s)	33, 1059
BsrFI	RCCGGY	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	1326
BssAI	RCCGGY	1 cut(s)	507
BssMI	GATC	4 cut(s)	88, 655, 786, 811
Bst4CI	ACNGT	2 cut(s)	131, 1477
Bst6I	CTCTTC	4 cut(s)	939, 1149, 1170, 1212
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBAI	YACGTR	1 cut(s)	792
BstBI	TTCGAA	2 cut(s)	516, 713
BstC8I	GCNNGC	2 cut(s)	1122, 1380
BstDEI	CTNAG	7 cut(s)	841, 852, 874, 1149, 1191, 1233, 1383
BstF5I	GGATG	4 cut(s)	150, 493, 1228, 1423
BstFNI	CGCG	1 cut(s)	918
BstKTI	GATC	4 cut(s)	91, 658, 789, 814
BstMAI	GTCTC	3 cut(s)	941, 1063, 1202
BstMBI	GATC	4 cut(s)	88, 655, 786, 811
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 915
BstNSI	RCATGY	2 cut(s)	1022, 1382
BstSFI	CTRYAG	2 cut(s)	907, 1212
BstUI	CGCG	1 cut(s)	918
BstV1I	GCAGC	1 cut(s)	1432
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BtgZI	GCGATG	1 cut(s)	506
BtrI	CACGTC	1 cut(s)	731
BtsCI	GGATG	4 cut(s)	150, 493, 1228, 1423
BtsI	GCAGTG	2 cut(s)	171, 1467
BtsIMutI	CAGTG	4 cut(s)	136, 171, 1467, 1482
Cac8I	GCNNGC	2 cut(s)	1122, 1380
CciI	TCATGA	1 cut(s)	1003
Cfr10I	RCCGGY	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	280, 1366
CspAI	ACCGGT	1 cut(s)	507
CviAII	CATG	7 cut(s)	41, 227, 244, 967, 1004, 1019, 1379
CviJI	RGCY	8 cut(s)	7, 600, 649, 778, 851, 929, 959, 1306
CviKI_1	RGCY	8 cut(s)	7, 600, 649, 778, 851, 929, 959, 1306
CviQI	GTAC	2 cut(s)	280, 1366
DdeI	CTNAG	7 cut(s)	841, 852, 874, 1149, 1191, 1233, 1383
DpnI	GATC	4 cut(s)	90, 657, 788, 813
DpnII	GATC	4 cut(s)	88, 655, 786, 811
Eam1104I	CTCTTC	4 cut(s)	939, 1149, 1170, 1212
EarI	CTCTTC	4 cut(s)	939, 1149, 1170, 1212
Ecl136II	GAGCTC	2 cut(s)	600, 649
Eco24I	GRGCYC	3 cut(s)	9, 602, 651
Eco31I	GGTCTC	1 cut(s)	1063
Eco32I	GATATC	3 cut(s)	525, 586, 1464
Eco53kI	GAGCTC	2 cut(s)	600, 649
Eco72I	CACGTG	1 cut(s)	792
EcoICRI	GAGCTC	2 cut(s)	600, 649
EcoRV	GATATC	3 cut(s)	525, 586, 1464
EcoT22I	ATGCAT	2 cut(s)	545, 1100
EcoT38I	GRGCYC	3 cut(s)	9, 602, 651
FaeI	CATG	7 cut(s)	44, 230, 247, 970, 1007, 1022, 1382
FaqI	GGGAC	1 cut(s)	1031
FatI	CATG	7 cut(s)	40, 226, 243, 966, 1003, 1018, 1378
Fnu4HI	GCNGC	2 cut(s)	342, 1421
FokI	GGATG	4 cut(s)	137, 500, 1235, 1410
FriOI	GRGCYC	3 cut(s)	9, 602, 651
Fsp4HI	GCNGC	2 cut(s)	342, 1421
FspBI	CTAG	2 cut(s)	47, 57
GluI	GCNGC	2 cut(s)	342, 1421
GsaI	CCCAGC	1 cut(s)	1052
GsuI	CTGGAG	3 cut(s)	452, 1343, 1394
HapII	CCGG	2 cut(s)	508, 1427
Hin1II	CATG	7 cut(s)	44, 230, 247, 970, 1007, 1022, 1382
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	4 cut(s)	710, 722, 1074, 1405
HpaII	CCGG	2 cut(s)	508, 1427
HphI	GGTGA	6 cut(s)	308, 432, 440, 1327, 1407, 1414
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	3 cut(s)	155, 1070, 1386
Hpy188III	TCNNGA	8 cut(s)	249, 560, 589, 726, 809, 1004, 1373, 1427
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	3 cut(s)	133, 478, 1232
HpyCH4III	ACNGT	2 cut(s)	131, 1477
HpyCH4IV	ACGT	4 cut(s)	556, 730, 791, 1103
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 915
HpyF3I	CTNAG	7 cut(s)	841, 852, 874, 1149, 1191, 1233, 1383
HpySE526I	ACGT	4 cut(s)	556, 730, 791, 1103
Hsp92II	CATG	7 cut(s)	44, 230, 247, 970, 1007, 1022, 1382
Kpn2I	TCCGGA	1 cut(s)	1426
Kzo9I	GATC	4 cut(s)	88, 655, 786, 811
LmnI	GCTCC	4 cut(s)	4, 23, 1255, 1375
Lsp1109I	GCAGC	1 cut(s)	1432
MaeI	CTAG	2 cut(s)	47, 57
MaeII	ACGT	4 cut(s)	556, 730, 791, 1103
MaeIII	GTNAC	2 cut(s)	366, 1108
MalI	GATC	4 cut(s)	90, 657, 788, 813
MboI	GATC	4 cut(s)	88, 655, 786, 811
MfeI	CAATTG	1 cut(s)	1125
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	3 cut(s)	9, 602, 651
Mph1103I	ATGCAT	2 cut(s)	545, 1100
MroI	TCCGGA	1 cut(s)	1426
MseI	TTAA	5 cut(s)	140, 636, 660, 780, 924
MslI	CAYNNNNRTG	3 cut(s)	140, 155, 294
MspI	CCGG	2 cut(s)	508, 1427
MunI	CAATTG	1 cut(s)	1125
MvnI	CGCG	1 cut(s)	918
MwoI	GCNNNNNNNGC	2 cut(s)	350, 915
NdeII	GATC	4 cut(s)	88, 655, 786, 811
NlaIII	CATG	7 cut(s)	44, 230, 247, 970, 1007, 1022, 1382
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	1108
NsiI	ATGCAT	2 cut(s)	545, 1100
NspI	RCATGY	2 cut(s)	1022, 1382
NspV	TTCGAA	2 cut(s)	516, 713
PaeI	GCATGC	1 cut(s)	1382
PagI	TCATGA	1 cut(s)	1003
PciI	ACATGT	1 cut(s)	1018
PfeI	GAWTC	4 cut(s)	710, 722, 1074, 1405
PflFI	GACNNNGTC	2 cut(s)	732, 1043
PflMI	CCANNNNNTGG	1 cut(s)	475
PinAI	ACCGGT	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	343, 1422
PmaCI	CACGTG	1 cut(s)	792
PmlI	CACGTG	1 cut(s)	792
Ppu21I	YACGTR	1 cut(s)	792
PscI	ACATGT	1 cut(s)	1018
Psp124BI	GAGCTC	2 cut(s)	602, 651
PspCI	CACGTG	1 cut(s)	792
PspFI	CCCAGC	1 cut(s)	1048
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	911
PsuI	RGATCY	1 cut(s)	655
PsyI	GACNNNGTC	2 cut(s)	732, 1043
RsaI	GTAC	2 cut(s)	281, 1367
RsaNI	GTAC	2 cut(s)	280, 1366
RseI	CAYNNNNRTG	3 cut(s)	140, 155, 294
SacI	GAGCTC	2 cut(s)	602, 651
SaqAI	TTAA	5 cut(s)	140, 636, 660, 780, 924
SatI	GCNGC	2 cut(s)	342, 1421
Sau3AI	GATC	4 cut(s)	88, 655, 786, 811
SduI	GDGCHC	3 cut(s)	9, 602, 651
SfcI	CTRYAG	2 cut(s)	907, 1212
SfuI	TTCGAA	2 cut(s)	516, 713
SmiMI	CAYNNNNRTG	3 cut(s)	140, 155, 294
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SphI	GCATGC	1 cut(s)	1382
SsiI	CCGC	2 cut(s)	342, 1418
SspI	AATATT	5 cut(s)	615, 763, 1000, 1271, 1497
SspMI	CTAG	2 cut(s)	47, 57
SstI	GAGCTC	2 cut(s)	602, 651
TaaI	ACNGT	2 cut(s)	131, 1477
TaiI	ACGT	4 cut(s)	559, 733, 794, 1106
TaqI	TCGA	6 cut(s)	75, 248, 336, 516, 713, 977
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	4 cut(s)	710, 722, 1074, 1405
Tru1I	TTAA	5 cut(s)	140, 636, 660, 780, 924
Tru9I	TTAA	5 cut(s)	140, 636, 660, 780, 924
TscAI	CASTG	4 cut(s)	136, 171, 1474, 1482
TseFI	GTSAC	1 cut(s)	1108
TseI	GCWGC	1 cut(s)	1420
Tsp45I	GTSAC	1 cut(s)	1108
TspGWI	ACGGA	3 cut(s)	192, 416, 1200
TspRI	CASTG	4 cut(s)	136, 171, 1474, 1482
Tth111I	GACNNNGTC	2 cut(s)	732, 1043
Van91I	CCANNNNNTGG	1 cut(s)	475
XceI	RCATGY	2 cut(s)	1022, 1382
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1261, 1474
XspI	CTAG	2 cut(s)	47, 57
Zsp2I	ATGCAT	2 cut(s)	545, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.