Rh2DG545900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002877
Physical Location & Seq
Forward (+)
77492716 .. 77493081
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG545900.1

Sequence Viewer

Length: 366 bp
ATGGAGCCCAAGTGTGAGTTGGGAGCAATGACAAGTTCTCATGTTCTAGGAACTTCTAGTGAGAGTATCATCATCGACAGATTTAGTGATCTCCCAGATGAAATTGCTCATCACATTCTTTCCTTCCACTGTGGCATCTTAATGAACCTCATCCGAGTGGGCGCAGTGTCCAAGAGATGCAGACAACTTTATCTATCACTTCCGTCTTTGATTATTGTTTCAGGTCATGTTTCAAACTGCACCAGGTCGAGACTAAGGTTGATGAATTTTTGGGACAGGTACTTGTTTCATCGTGGTGATAATAAGATAAGAGTGCTTTGGCATTTGCTGGTCTTTCGATGCCGCAGTCAATGCAGAGATAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

121

Amino Acids

14.02

Weight (kDa)

9.49

Isoelectric Point (pI)

44.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 343
AcsI RAATTY 1 cut(s) 265
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 1 cut(s) 234
AjnI CCWGG 1 cut(s) 242
Alw26I GTCTC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 265
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 308
BanII GRGCYC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 47, 57
BisI GCNGC 1 cut(s) 343
BlsI GCNGC 1 cut(s) 344
Bme1390I CCNGG 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 244
BmsI GCATC 3 cut(s) 144, 167, 329
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 150
BseMI GCAATG 1 cut(s) 33
BsgI GTGCAG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 343
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 33
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 131
BstAPI GCANNNNNTGC 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 351
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 242
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 127, 171
CfoI GCGC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 1 cut(s) 280
CviAII CATG 2 cut(s) 41, 227
CviJI RGCY 1 cut(s) 7
CviKI_1 RGCY 1 cut(s) 7
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 254
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 2 cut(s) 44, 230
FaiI YATR 2 cut(s) 42, 228
FaqI GGGAC 1 cut(s) 287
FatI CATG 2 cut(s) 40, 226
Fnu4HI GCNGC 1 cut(s) 343
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 1 cut(s) 343
FspBI CTAG 2 cut(s) 47, 57
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 343
HhaI GCGC 1 cut(s) 164
Hin1II CATG 2 cut(s) 44, 230
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HphI GGTGA 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 3 cut(s) 180, 240, 354
HpyF10VI GCNNNNNNNGC 1 cut(s) 351
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 2 cut(s) 44, 230
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 2 cut(s) 4, 23
LpnPI CCDG 6 cut(s) 108, 207, 229, 256, 262, 314
LweI GCATC 3 cut(s) 144, 167, 329
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 2 cut(s) 47, 57
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 2 cut(s) 102, 265
MnlI CCTC 1 cut(s) 158
MseI TTAA 1 cut(s) 140
MslI CAYNNNNRTG 3 cut(s) 140, 155, 294
MspR9I CCNGG 1 cut(s) 244
MvaI CCWGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 351
NdeII GATC 1 cut(s) 88
NlaIII CATG 2 cut(s) 44, 230
NlaIV GGNNCC 1 cut(s) 6
PkrI GCNGC 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 3 cut(s) 140, 155, 294
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 1 cut(s) 343
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 150, 226, 248, 260, 281
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 3 cut(s) 144, 167, 329
SmiMI CAYNNNNRTG 3 cut(s) 140, 155, 294
Sse9I AATT 2 cut(s) 102, 265
SsiI CCGC 1 cut(s) 343
SspMI CTAG 2 cut(s) 47, 57
StyD4I CCNGG 1 cut(s) 242
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 75, 248, 337
TasI AATT 2 cut(s) 102, 265
TauI GCSGC 1 cut(s) 345
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TscAI CASTG 2 cut(s) 134, 171
TspDTI ATGAA 4 cut(s) 114, 158, 278, 278
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 2 cut(s) 134, 171
XapI RAATTY 1 cut(s) 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 2 cut(s) 47, 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.