Rh5BG471100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002877
Physical Location & Seq
Reverse (-)
75054794 .. 75057699
2906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG471100.1

Sequence Viewer

Length: 1515 bp
ATGTTACAAGAAAAGGAGTGTTACAACAGACCAGGCCCAGTTGGCCCACTCACCAAAACAATCTCAGAATCCGCACTCCCCGCTCATCACACAACCCAACACTATTTTCTCGTCTTTTTCATCTCTTGTTCTCGATTCTCGTGCGAACTCATCTCTCTCATTCCTTGTAGATTCTTCATCTGCGACTCTCCTTCTTGGGATAGATATCAGTATTTGAAATGGTCGATTGAAAAGGGGAACGATTCTTGTGGCTCAGTTGTCCAACCAGGTCATGTTTCAAACTGCACCATGTCGAGAGTAAGGTTGATGAATTATTGGGATAGGTACTTGTTTCATCGTGGTGATAATAAGATAGAGTGCTTTGGCATTTGCTGGTCTTTCGATGCCACAGTCAATGCAGAGATAAGTGATGAGTTTTTTCGAATCACCACGTGGATCCAAAATGCAGTAAGGTGTAATGTTAAAGTGCTTCACCTTGAATTCACTCAAAACAACTTGAATATAGTTGTGTTACCATCTTGCATCTTTCATTGTCATTCTTTGACGGAACTCTATGTGAACTTGAGTGGGGGTGATATTCAATCACCCTCCTTGTCTTTTTCAAGTAATCTCCAGCACTTGGAGTTGAAGGATGCTATGGTTGAAGATGACCGGTTTTTCGAATGGATATCATCTTCCTGCAAATGCATCAAGGAATTACGTCTTGAAAATGTTAGTGGAATAAAAGATATCACGATTGAGAGCTCGTCTTTGGAAATATTTATTTATCTGTTTCCTTTTAACAATTATGAGCTCTGGGATCTTAATATTTCAGGGGAGAAACTTGAAGAAATAATAATACTTTGGCATTTTGATTCGAATGATGATTCAAGACGTGGTCTTATACCTCGCATCAGGTCGCTAAATATTCTCGCCCCAAAGCTTAAAAAGATCACATGGGGTGGGAACTTTCTGGATCATCAGCATCTTGGGAACTTAATGTGCTTAGAAGAAGCTAAGATTTTTCTGTTCCCTGACTTAGATGACTTCAAGAACCCATTTGAGGTTCTCTGCAGTATTCGCGTGGCTAAAGCTCTTGTCCTAAACGAAGAGACTACAAAGGCTTTTTTCATGGAAAGTTCGATGCCATTACCATTAGATAATATTCATGACTTGACTTTGCATGTTAGAAGCGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTACTTTGAATACTTTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTTTAATGAAATTGAGGAAGAGGATTATAATTATGAGGAAGAGGACAACGGAACTGAGCAGGAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAGTGCTCCCAAGTTTGATGTGGAATATTGGAAATCCCAAAACCTTAATTTTACTTGTGAGCTAAAGGAGGTGAAACTGGAGATTGTGGAGGGTAATGATAATGAATTGGATTTAGCAAGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

504

Amino Acids

58.11

Weight (kDa)

4.67

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 143 - 317 9.4e-10 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1308
AccB7I CCANNNNNTGG 1 cut(s) 619
AccBSI CCGCTC 1 cut(s) 83
AccII CGCG 1 cut(s) 1062
AciI CCGC 2 cut(s) 72, 81
AclWI GGATC 4 cut(s) 430, 443, 807, 963
AcsI RAATTY 1 cut(s) 479
AcvI CACGTG 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 619, 1042, 1198
AgeI ACCGGT 1 cut(s) 651
AjiI CACGTC 1 cut(s) 875
AjnI CCWGG 2 cut(s) 31, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 90, 122
AluBI AGCT 6 cut(s) 744, 793, 922, 995, 1073, 1450
AluI AGCT 6 cut(s) 744, 793, 922, 995, 1073, 1450
Alw21I GWGCWC 3 cut(s) 746, 795, 1396
Alw26I GTCTC 3 cut(s) 1085, 1207, 1346
AlwI GGATC 4 cut(s) 430, 443, 807, 963
AoxI GGCC 2 cut(s) 34, 43
ApoI RAATTY 1 cut(s) 479
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AsiGI ACCGGT 1 cut(s) 651
AspS9I GGNCC 2 cut(s) 35, 44
AsuHPI GGTGA 7 cut(s) 43, 353, 418, 464, 576, 584, 1471
AsuII TTCGAA 3 cut(s) 421, 660, 857
BamHI GGATCC 1 cut(s) 435
BanII GRGCYC 2 cut(s) 746, 795
BauI CACGAG 1 cut(s) 139
BbrPI CACGTG 1 cut(s) 432
Bbv12I GWGCWC 3 cut(s) 746, 795, 1396
BccI CCATC 2 cut(s) 523, 1361
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 2 cut(s) 33, 267
BcoDI GTCTC 3 cut(s) 1085, 1207, 1346
BfmI CTRYAG 2 cut(s) 1051, 1356
BglI GCCNNNNNGGC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 33, 267
BmgBI CACGTC 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 35, 44
BmiI GGNNCC 1 cut(s) 437
BmrFI CCNGG 2 cut(s) 33, 267
BmrI ACTGGG 1 cut(s) 32
BmsI GCATC 7 cut(s) 373, 531, 622, 696, 900, 973, 1113
BmuI ACTGGG 1 cut(s) 32
BpmI CTGGAG 2 cut(s) 596, 1487
Bpu14I TTCGAA 3 cut(s) 421, 660, 857
BpuEI CTTGAG 1 cut(s) 583
BsaAI YACGTR 1 cut(s) 432
BsaBI GATNNNNATC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 1207
BsaWI WCCGGW 1 cut(s) 651
Bsc4I CCNNNNNNNGG 3 cut(s) 619, 1042, 1198
Bse118I RCCGGY 1 cut(s) 651
Bse1I ACTGG 2 cut(s) 38, 1470
Bse3DI GCAATG 1 cut(s) 1203
Bse8I GATNNNNATC 1 cut(s) 204
BseBI CCWGG 2 cut(s) 33, 267
BseGI GGATG 2 cut(s) 637, 1372
BseJI GATNNNNATC 1 cut(s) 204
BseLI CCNNNNNNNGG 3 cut(s) 619, 1042, 1198
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 4 cut(s) 78, 267, 1326, 1368
BseNI ACTGG 2 cut(s) 38, 1470
BseYI CCCAGC 1 cut(s) 1192
BsgI GTGCAG 1 cut(s) 268
Bsh1236I CGCG 1 cut(s) 1062
BshFI GGCC 2 cut(s) 36, 45
BshTI ACCGGT 1 cut(s) 651
BsiHKAI GWGCWC 3 cut(s) 746, 795, 1396
BsiSI CCGG 1 cut(s) 652
BslFI GGGAC 1 cut(s) 1175
BslI CCNNNNNNNGG 3 cut(s) 619, 1042, 1198
BsmAI GTCTC 3 cut(s) 1085, 1207, 1346
BsmFI GGGAC 1 cut(s) 1175
BsnI GGCC 2 cut(s) 36, 45
Bso31I GGTCTC 1 cut(s) 1207
Bsp119I TTCGAA 3 cut(s) 421, 660, 857
Bsp1286I GDGCHC 3 cut(s) 746, 795, 1396
Bsp143I GATC 4 cut(s) 435, 799, 930, 955
BspACI CCGC 2 cut(s) 72, 81
BspANI GGCC 2 cut(s) 36, 45
BspCNI CTCAG 4 cut(s) 77, 266, 1327, 1369
BspFNI CGCG 1 cut(s) 1062
BspHI TCATGA 1 cut(s) 1147
BspLI GGNNCC 1 cut(s) 437
BspMAI CTGCAG 1 cut(s) 1055
BspPI GGATC 4 cut(s) 430, 443, 807, 963
BspT104I TTCGAA 3 cut(s) 421, 660, 857
BspTNI GGTCTC 1 cut(s) 1207
BsrBI CCGCTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 1203
BsrFI RCCGGY 1 cut(s) 651
BsrI ACTGG 2 cut(s) 38, 1470
BssAI RCCGGY 1 cut(s) 651
BssMI GATC 4 cut(s) 435, 799, 930, 955
BssSI CACGAG 1 cut(s) 139
Bst2BI CACGAG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 33, 267
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 4 cut(s) 1083, 1293, 1314, 1356
BstBAI YACGTR 1 cut(s) 432
BstBI TTCGAA 3 cut(s) 421, 660, 857
BstC8I GCNNGC 1 cut(s) 1266
BstDEI CTNAG 7 cut(s) 64, 253, 985, 996, 1018, 1335, 1377
BstF5I GGATG 2 cut(s) 637, 1372
BstFNI CGCG 1 cut(s) 1062
BstKTI GATC 4 cut(s) 438, 802, 933, 958
BstMAI GTCTC 3 cut(s) 1085, 1207, 1346
BstMBI GATC 4 cut(s) 435, 799, 930, 955
BstMWI GCNNNNNNNGC 3 cut(s) 42, 80, 1059
BstNI CCWGG 2 cut(s) 33, 267
BstNSI RCATGY 1 cut(s) 1166
BstSCI CCNGG 2 cut(s) 31, 265
BstSFI CTRYAG 2 cut(s) 1051, 1356
BstUI CGCG 1 cut(s) 1062
BstX2I RGATCY 2 cut(s) 435, 799
BstYI RGATCY 2 cut(s) 435, 799
BsuRI GGCC 2 cut(s) 36, 45
BtrI CACGTC 1 cut(s) 875
BtsCI GGATG 2 cut(s) 637, 1372
Cac8I GCNNGC 1 cut(s) 1266
CciI TCATGA 1 cut(s) 1147
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 2 cut(s) 35, 44
CsiI ACCWGGT 1 cut(s) 265
Csp6I GTAC 1 cut(s) 325
CspAI ACCGGT 1 cut(s) 651
CviAII CATG 6 cut(s) 272, 289, 936, 1111, 1148, 1163
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 7 cut(s) 64, 253, 985, 996, 1018, 1335, 1377
DpnI GATC 4 cut(s) 437, 801, 932, 957
DpnII GATC 4 cut(s) 435, 799, 930, 955
DraIII CACNNNGTG 1 cut(s) 432
Eam1104I CTCTTC 4 cut(s) 1083, 1293, 1314, 1356
EarI CTCTTC 4 cut(s) 1083, 1293, 1314, 1356
Ecl136II GAGCTC 2 cut(s) 744, 793
Eco24I GRGCYC 2 cut(s) 746, 795
Eco31I GGTCTC 1 cut(s) 1207
Eco32I GATATC 3 cut(s) 206, 669, 730
Eco53kI GAGCTC 2 cut(s) 744, 793
Eco72I CACGTG 1 cut(s) 432
EcoICRI GAGCTC 2 cut(s) 744, 793
EcoRI GAATTC 1 cut(s) 479
EcoRII CCWGG 2 cut(s) 31, 265
EcoRV GATATC 3 cut(s) 206, 669, 730
EcoT22I ATGCAT 2 cut(s) 689, 1244
EcoT38I GRGCYC 2 cut(s) 746, 795
FaeI CATG 6 cut(s) 275, 292, 939, 1114, 1151, 1166
FaqI GGGAC 1 cut(s) 1175
FatI CATG 6 cut(s) 271, 288, 935, 1110, 1147, 1162
FauI CCCGC 1 cut(s) 88
FokI GGATG 2 cut(s) 644, 1379
FriOI GRGCYC 2 cut(s) 746, 795
GsaI CCCAGC 1 cut(s) 1196
GsuI CTGGAG 2 cut(s) 596, 1487
HaeIII GGCC 2 cut(s) 36, 45
HapII CCGG 1 cut(s) 652
Hin1II CATG 6 cut(s) 275, 292, 939, 1114, 1151, 1166
HindIII AAGCTT 1 cut(s) 920
HinfI GANTC 9 cut(s) 68, 135, 171, 185, 242, 423, 854, 866, 1218
HpaII CCGG 1 cut(s) 652
HphI GGTGA 7 cut(s) 43, 353, 418, 464, 576, 584, 1471
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 2 cut(s) 67, 1214
Hpy188III TCNNGA 8 cut(s) 132, 294, 704, 733, 870, 953, 1030, 1148
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 3 cut(s) 201, 622, 1376
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 4 cut(s) 431, 700, 874, 1247
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 80, 1059
HpyF3I CTNAG 7 cut(s) 64, 253, 985, 996, 1018, 1335, 1377
HpySE526I ACGT 4 cut(s) 431, 700, 874, 1247
Hsp92II CATG 6 cut(s) 275, 292, 939, 1114, 1151, 1166
Kzo9I GATC 4 cut(s) 435, 799, 930, 955
LmnI GCTCC 1 cut(s) 1399
LweI GCATC 7 cut(s) 373, 531, 622, 696, 900, 973, 1113
MabI ACCWGGT 1 cut(s) 265
MaeII ACGT 4 cut(s) 431, 700, 874, 1247
MaeIII GTNAC 4 cut(s) 3, 20, 510, 1252
MalI GATC 4 cut(s) 437, 801, 932, 957
MbiI CCGCTC 1 cut(s) 83
MboI GATC 4 cut(s) 435, 799, 930, 955
MboII GAAGA 9 cut(s) 166, 656, 666, 839, 1001, 1100, 1310, 1331, 1373
MfeI CAATTG 1 cut(s) 1269
MflI RGATCY 2 cut(s) 435, 799
MhlI GDGCHC 3 cut(s) 746, 795, 1396
MluCI AATT 9 cut(s) 310, 479, 695, 784, 1269, 1290, 1309, 1435, 1493
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 286
Mph1103I ATGCAT 2 cut(s) 689, 1244
MseI TTAA 7 cut(s) 462, 780, 804, 924, 977, 1284, 1434
MslI CAYNNNNRTG 1 cut(s) 339
MspI CCGG 1 cut(s) 652
MspR9I CCNGG 2 cut(s) 33, 267
MunI CAATTG 1 cut(s) 1269
MvaI CCWGG 2 cut(s) 33, 267
MvnI CGCG 1 cut(s) 1062
MwoI GCNNNNNNNGC 3 cut(s) 42, 80, 1059
NdeII GATC 4 cut(s) 435, 799, 930, 955
NlaIII CATG 6 cut(s) 275, 292, 939, 1114, 1151, 1166
NlaIV GGNNCC 1 cut(s) 437
NmuCI GTSAC 1 cut(s) 1252
NsiI ATGCAT 2 cut(s) 689, 1244
NspI RCATGY 1 cut(s) 1166
NspV TTCGAA 3 cut(s) 421, 660, 857
PagI TCATGA 1 cut(s) 1147
PfeI GAWTC 8 cut(s) 68, 135, 171, 242, 423, 854, 866, 1218
PflFI GACNNNGTC 2 cut(s) 876, 1187
PflMI CCANNNNNTGG 1 cut(s) 619
PinAI ACCGGT 1 cut(s) 651
PleI GAGTC 1 cut(s) 179
PmaCI CACGTG 1 cut(s) 432
PmlI CACGTG 1 cut(s) 432
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 432
PsiI TTATAA 1 cut(s) 1308
Psp124BI GAGCTC 2 cut(s) 746, 795
Psp6I CCWGG 2 cut(s) 31, 265
PspCI CACGTG 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 1192
PspGI CCWGG 2 cut(s) 31, 265
PspN4I GGNNCC 1 cut(s) 437
PspPI GGNCC 2 cut(s) 35, 44
PstI CTGCAG 1 cut(s) 1055
PsuI RGATCY 2 cut(s) 435, 799
PsyI GACNNNGTC 2 cut(s) 876, 1187
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
RseI CAYNNNNRTG 1 cut(s) 339
SacI GAGCTC 2 cut(s) 746, 795
SaqAI TTAA 7 cut(s) 462, 780, 804, 924, 977, 1284, 1434
Sau3AI GATC 4 cut(s) 435, 799, 930, 955
Sau96I GGNCC 2 cut(s) 35, 44
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 33, 267
SduI GDGCHC 3 cut(s) 746, 795, 1396
SexAI ACCWGGT 1 cut(s) 265
SfaNI GCATC 7 cut(s) 373, 531, 622, 696, 900, 973, 1113
SfcI CTRYAG 2 cut(s) 1051, 1356
SfiI GGCCNNNNNGGCC 1 cut(s) 42
SfuI TTCGAA 3 cut(s) 421, 660, 857
SmiMI CAYNNNNRTG 1 cut(s) 339
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 9 cut(s) 310, 479, 695, 784, 1269, 1290, 1309, 1435, 1493
SsiI CCGC 2 cut(s) 72, 81
SspI AATATT 5 cut(s) 759, 808, 907, 1144, 1415
SstI GAGCTC 2 cut(s) 746, 795
StyD4I CCNGG 2 cut(s) 31, 265
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 4 cut(s) 434, 703, 877, 1250
TaqI TCGA 8 cut(s) 133, 224, 293, 381, 421, 660, 857, 1121
TasI AATT 9 cut(s) 310, 479, 695, 784, 1269, 1290, 1309, 1435, 1493
TfiI GAWTC 8 cut(s) 68, 135, 171, 242, 423, 854, 866, 1218
Tru1I TTAA 7 cut(s) 462, 780, 804, 924, 977, 1284, 1434
Tru9I TTAA 7 cut(s) 462, 780, 804, 924, 977, 1284, 1434
TseFI GTSAC 1 cut(s) 1252
Tsp45I GTSAC 1 cut(s) 1252
TspDTI ATGAA 9 cut(s) 109, 166, 323, 323, 518, 1099, 1136, 1302, 1506
TspGWI ACGGA 2 cut(s) 560, 1344
Tth111I GACNNNGTC 2 cut(s) 876, 1187
Van91I CCANNNNNTGG 1 cut(s) 619
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 1166
XcmI CCANNNNNNNNNTGG 1 cut(s) 1405
Zsp2I ATGCAT 2 cut(s) 689, 1244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.