Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000936.1

Orthogroup ID

OG0002877

Physical Location & Seq

Genomic Coordinates Reverse (-)

11639 .. 12748

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000936.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atgacaagttgtcaagttcaaggagcttctagtgagagtataatgatggacagattcagtgatctcccagatgaaatttctcatcatattatttcgttcctctctgactctttaaggaacctcattcaagtgggagctgtgtccaaaagatgtaggaaactttatctgtcagttccatcaataactattgatgcaagtagcgttgcagattgcaccaagttgcgagtaagattgctgaactcttgggataggtacttgtttcaccgtggtaataataagattgagcaccttagtatttactgggttttcagaacctcttgggaggcaaagataagtgatgactatttccgagtcaccacatggatccaaaatgcagtgaggtgtaatgttgaagtacttcaccttgatctgaatcaatacgaccgcaggatgacagttgtgttgccgtcttgcatcttcctttgtcattctttgaggactctatctgtgaatttgtatatgggcaagattcagtcacccaacttgtctttttcctgtaatctccactacttgaagttgaagtatgtacgtcttaaagatgatggtattttcaaatggatctcatattcctgcaaatgcattaaggaattacatcttgaaaaagttattgggataaaagatatcaagattgagagcttgtctttggaatcgtttagtcttttgcttccttttcagaattatgagctctgggatcttagcatttcagctgaaaaacttgaagatatatgtatacactggcaatttgattcgagacgtgattcaaagtttcatcttttacctcgcatcagatcatttaatctctttgctccaaagcttaaaaatttcaaatggagtgggaattttctgaaccatcatcatcttgggaacttgatgtgtttagaagaagctgacatatttctgatgcccgatttagatgattctagcaacctatttgaggttctttgcagcatatgtatggttaaagttctaaccctaaatgaagaaagtacaaaggtaagaacaaatgcccttcagactatgaaatctttttatgtggctatatggcttgtcactgcgaatacaatatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

369

Amino Acids

43.09

Weight (kDa)

8.35

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157031 RchiOBHm_Chr5g0068981 RchiOBHm_Chr5g0069001
rosa_laevigata	RLG00000036027 RLG00000036029
rosa_multiflora	Rmu_sc0000853.1_g000002 Rmu_sc0000853.1_g000004 Rmu_sc0000936.1_g000002 Rmu_sc0006282.1_g000034 Rmu_sc0006282.1_g000035
rosa_roxburghii	Rroxscaffold_1G00011720 Rroxscaffold_1G00011740 Rroxscaffold_1G00029480 Rroxscaffold_3G00231060
rosa_rugosa	Rorug05G0395500 Rorug05G0395600 Rorug07G0214700 Rorug07G0214900
rosa_samantha	Rh2BG537000 Rh2BG537100 Rh2BG537200 Rh2DG545800 Rh2DG545900 Rh2DG546000 Rh5AG452100 Rh5AG452300 Rh5BG471100 Rh5BG471300 Rh5CG493500 Rh5CG493800 Rh5DG483800 Rh5DG484000 Rh7BG348100 Rh7BG348200 Rh7BG348400
rosa_wichuraiana	Rw0G006120 Rw0G006140 Rw2G043220 Rw5G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	769
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	4 cut(s)	358, 371, 605, 738
AcsI	RAATTY	4 cut(s)	75, 490, 859, 877
AcuI	CTGAAG	1 cut(s)	1034
AfaI	GTAC	4 cut(s)	254, 396, 567, 1027
AfiI	CCNNNNNNNGG	1 cut(s)	973
AhdI	GACNNNNNGTC	1 cut(s)	9
AjiI	CACGTC	1 cut(s)	794
AjuI	GAANNNNNNNTTGG	2 cut(s)	630, 662
AluBI	AGCT	7 cut(s)	26, 137, 675, 724, 746, 853, 926
AluI	AGCT	7 cut(s)	26, 137, 675, 724, 746, 853, 926
Alw21I	GWGCWC	2 cut(s)	288, 726
Alw26I	GTCTC	1 cut(s)	784
AlwI	GGATC	4 cut(s)	358, 371, 605, 738
ApeKI	GCWGC	1 cut(s)	984
ApoI	RAATTY	4 cut(s)	75, 490, 859, 877
Asp700I	GAANNNNTTC	1 cut(s)	396
AsuHPI	GGTGA	4 cut(s)	254, 346, 392, 507
BamHI	GGATCC	1 cut(s)	363
BanII	GRGCYC	1 cut(s)	726
Bbv12I	GWGCWC	2 cut(s)	288, 726
BbvI	GCAGC	1 cut(s)	996
BccI	CCATC	4 cut(s)	40, 184, 575, 897
BceAI	ACGGC	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	784
BfaI	CTAG	2 cut(s)	30, 960
BisI	GCNGC	1 cut(s)	985
BlsI	GCNGC	1 cut(s)	986
BmcAI	AGTACT	1 cut(s)	396
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmgBI	CACGTC	1 cut(s)	794
BmiI	GGNNCC	2 cut(s)	119, 365
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	4 cut(s)	181, 462, 831, 930
BmuI	ACTGGG	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	973
Bse1I	ACTGG	2 cut(s)	305, 779
Bse8I	GATNNNNATC	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	265
BseGI	GGATG	1 cut(s)	435
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	973
BseNI	ACTGG	2 cut(s)	305, 779
BseXI	GCAGC	1 cut(s)	996
Bsh1285I	CGRYCG	1 cut(s)	424
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	2 cut(s)	288, 726
BslI	CCNNNNNNNGG	1 cut(s)	973
BsmAI	GTCTC	1 cut(s)	784
BsmBI	CGTCTC	1 cut(s)	784
Bsp1286I	GDGCHC	2 cut(s)	288, 726
Bsp143I	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
BspACI	CCGC	1 cut(s)	424
BspLI	GGNNCC	2 cut(s)	119, 365
BspPI	GGATC	4 cut(s)	358, 371, 605, 738
BsrI	ACTGG	2 cut(s)	305, 779
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
BssNAI	GTATAC	1 cut(s)	770
Bst1107I	GTATAC	1 cut(s)	770
Bst4CI	ACNGT	2 cut(s)	266, 436
BstDEI	CTNAG	2 cut(s)	290, 734
BstDSI	CCRYGG	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	971
BstF5I	GGATG	1 cut(s)	435
BstKTI	GATC	6 cut(s)	64, 366, 409, 600, 733, 830
BstMAI	GTCTC	1 cut(s)	784
BstMBI	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
BstMCI	CGRYCG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	996
BstX2I	RGATCY	3 cut(s)	363, 597, 730
BstYI	RGATCY	3 cut(s)	363, 597, 730
BstZ17I	GTATAC	1 cut(s)	770
BtgI	CCRYGG	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	2 cut(s)	381, 1089
BtsIMutI	CAGTG	4 cut(s)	64, 381, 772, 1089
Csp6I	GTAC	4 cut(s)	253, 395, 566, 1026
CspCI	CAANNNNNGTGG	2 cut(s)	853, 888
CviAII	CATG	1 cut(s)	360
CviJI	RGCY	9 cut(s)	26, 137, 675, 724, 746, 853, 926, 1076, 1084
CviKI_1	RGCY	9 cut(s)	26, 137, 675, 724, 746, 853, 926, 1076, 1084
CviQI	GTAC	4 cut(s)	253, 395, 566, 1026
DdeI	CTNAG	2 cut(s)	290, 734
DpnI	GATC	6 cut(s)	63, 365, 408, 599, 732, 829
DpnII	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	726
Eco32I	GATATC	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	724
Eco57I	CTGAAG	1 cut(s)	1034
EcoICRI	GAGCTC	1 cut(s)	724
EcoNI	CCTNNNNNAGG	1 cut(s)	971
EcoRV	GATATC	1 cut(s)	661
EcoT22I	ATGCAT	1 cut(s)	620
EcoT38I	GRGCYC	1 cut(s)	726
Esp3I	CGTCTC	1 cut(s)	784
FaeI	CATG	1 cut(s)	363
FatI	CATG	1 cut(s)	359
FauNDI	CATATG	1 cut(s)	989
FblI	GTMKAC	1 cut(s)	769
Fnu4HI	GCNGC	1 cut(s)	985
FokI	GGATG	1 cut(s)	442
FriOI	GRGCYC	1 cut(s)	726
Fsp4HI	GCNGC	1 cut(s)	985
FspBI	CTAG	2 cut(s)	30, 960
GluI	GCNGC	1 cut(s)	985
Hin1II	CATG	1 cut(s)	363
HindIII	AAGCTT	1 cut(s)	851
HphI	GGTGA	4 cut(s)	254, 346, 392, 507
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	9 cut(s)	106, 311, 350, 411, 714, 827, 885, 939, 1053
Hpy188III	TCNNGA	3 cut(s)	635, 664, 789
Hpy8I	GTNNAC	1 cut(s)	770
HpyAV	CCTTC	1 cut(s)	1058
HpyCH4III	ACNGT	2 cut(s)	266, 436
HpyCH4IV	ACGT	2 cut(s)	568, 793
HpyCH4V	TGCA	8 cut(s)	194, 206, 213, 374, 453, 612, 618, 984
HpyF3I	CTNAG	2 cut(s)	290, 734
HpySE526I	ACGT	2 cut(s)	568, 793
Hsp92II	CATG	1 cut(s)	363
Kzo9I	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
LmnI	GCTCC	3 cut(s)	23, 134, 850
LpnPI	CCDG	7 cut(s)	81, 286, 412, 547, 622, 712, 760
Lsp1109I	GCAGC	1 cut(s)	996
LweI	GCATC	4 cut(s)	181, 462, 831, 930
MaeI	CTAG	2 cut(s)	30, 960
MaeII	ACGT	2 cut(s)	568, 793
MaeIII	GTNAC	3 cut(s)	352, 513, 1087
MalI	GATC	6 cut(s)	63, 365, 408, 599, 732, 829
MboI	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
MboII	GAAGA	4 cut(s)	448, 770, 932, 1031
MflI	RGATCY	3 cut(s)	363, 597, 730
MhlI	GDGCHC	2 cut(s)	288, 726
MluCI	AATT	7 cut(s)	75, 490, 626, 715, 779, 859, 877
MlyI	GAGTC	3 cut(s)	101, 360, 472
MnlI	CCTC	8 cut(s)	110, 131, 316, 325, 372, 468, 828, 967
Mph1103I	ATGCAT	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	396
MseI	TTAA	6 cut(s)	113, 573, 621, 834, 855, 999
MslI	CAYNNNNRTG	2 cut(s)	128, 992
MspA1I	CMGCKG	1 cut(s)	746
NdeI	CATATG	1 cut(s)	989
NdeII	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
NlaIII	CATG	1 cut(s)	363
NlaIV	GGNNCC	2 cut(s)	119, 365
NmuCI	GTSAC	3 cut(s)	352, 513, 1087
NsiI	ATGCAT	1 cut(s)	620
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	7 cut(s)	54, 412, 508, 686, 785, 797, 956
PkrI	GCNGC	1 cut(s)	986
PleI	GAGTC	3 cut(s)	101, 359, 472
PpsI	GAGTC	3 cut(s)	101, 359, 472
Psp124BI	GAGCTC	1 cut(s)	726
PspN4I	GGNNCC	2 cut(s)	119, 365
PsuI	RGATCY	3 cut(s)	363, 597, 730
PvuII	CAGCTG	1 cut(s)	746
RsaI	GTAC	4 cut(s)	254, 396, 567, 1027
RsaNI	GTAC	4 cut(s)	253, 395, 566, 1026
RseI	CAYNNNNRTG	2 cut(s)	128, 992
SacI	GAGCTC	1 cut(s)	726
SaqAI	TTAA	6 cut(s)	113, 573, 621, 834, 855, 999
SatI	GCNGC	1 cut(s)	985
Sau3AI	GATC	6 cut(s)	61, 363, 406, 597, 730, 827
ScaI	AGTACT	1 cut(s)	396
SchI	GAGTC	3 cut(s)	101, 360, 472
SduI	GDGCHC	2 cut(s)	288, 726
SfaNI	GCATC	4 cut(s)	181, 462, 831, 930
SmiMI	CAYNNNNRTG	2 cut(s)	128, 992
Sse9I	AATT	7 cut(s)	75, 490, 626, 715, 779, 859, 877
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	2 cut(s)	30, 960
SstI	GAGCTC	1 cut(s)	726
TaaI	ACNGT	2 cut(s)	266, 436
TaiI	ACGT	2 cut(s)	571, 796
TaqI	TCGA	1 cut(s)	788
TasI	AATT	7 cut(s)	75, 490, 626, 715, 779, 859, 877
TatI	WGTACW	2 cut(s)	394, 1025
TfiI	GAWTC	7 cut(s)	54, 412, 508, 686, 785, 797, 956
Tru1I	TTAA	6 cut(s)	113, 573, 621, 834, 855, 999
Tru9I	TTAA	6 cut(s)	113, 573, 621, 834, 855, 999
TscAI	CASTG	4 cut(s)	64, 381, 779, 1096
TseFI	GTSAC	3 cut(s)	352, 513, 1087
TseI	GCWGC	1 cut(s)	984
Tsp45I	GTSAC	3 cut(s)	352, 513, 1087
TspDTI	ATGAA	4 cut(s)	87, 797, 1032, 1073
TspRI	CASTG	4 cut(s)	64, 381, 779, 1096
XagI	CCTNNNNNAGG	1 cut(s)	971
XapI	RAATTY	4 cut(s)	75, 490, 859, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	896
XmiI	GTMKAC	1 cut(s)	769
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	2 cut(s)	30, 960
ZrmI	AGTACT	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.