Rorug05G0395500

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002877
Physical Location & Seq
Reverse (-)
54243141 .. 54243987
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0395500.1

Sequence Viewer

Length: 639 bp
ATGCTTAGCCTCAGTGTCACCAAATACCAAACAACCATCACCATTGGCTGCTTTGCCCTAACTTCTTCTTCTAACCCATCCCTATCCACGCCTTTCCTTCCCAACATGTCCACTAACCAGGGTGAAATCATCATCGATCTTCTGGAGGAGGATAGAGGAGACAGAGTTCTCCCTCATCAGATGCTGGGCATGGTGATCTCTGATCGTCCTCTCAACTCTTCGACGGTCATTAAGATCCTGACTCAAGCTTGGACCGAGTTTGGCTGGGTTCACCTGGAACCGCTTCAAAACGTCACCAATGTTTACTCCATCACTCTAGATGACTCTGTTGCTGACCAGCTCCTCTTGGCAAAAAGTTCATGGTCAGTCATGGGATGCAGTTTCAGTATACACATTTGGCCAATTGAAAGCAGGCTAGAAGACATTCCCCTTCATCTGTTGGATATCTGGATCCAAGTTCATGGCCTCCCTCTGGGTCAGATGTCCCTTGCAAACGCAAGACTTGGGGATGGATCCCGCCATTGCTCTCACCCACGGCATCCGGCGGCTGACAAGTATGGAGCTTGGATCCCTACAACTACAGCTAGAAAGCTTCTACCCCAACAGAATGATAGGGAAAGAAAATGGAATGGGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

212

Amino Acids

23.71

Weight (kDa)

6.03

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 388
AciI CCGC 3 cut(s) 281, 517, 545
AclWI GGATC 7 cut(s) 229, 445, 458, 507, 520, 562, 575
AcoI YGGCCR 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 472
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 2 cut(s) 287, 407
AjnI CCWGG 2 cut(s) 117, 273
AloI GAACNNNNNNTCC 2 cut(s) 150, 182
AluBI AGCT 5 cut(s) 248, 340, 563, 584, 592
AluI AGCT 5 cut(s) 248, 340, 563, 584, 592
Alw26I GTCTC 1 cut(s) 153
AlwI GGATC 7 cut(s) 229, 445, 458, 507, 520, 562, 575
AlwNI CAGNNNCTG 1 cut(s) 184
AoxI GGCC 2 cut(s) 398, 463
ApeKI GCWGC 1 cut(s) 48
Asp700I GAANNNNTTC 2 cut(s) 282, 423
AspS9I GGNCC 1 cut(s) 252
AsuHPI GGTGA 7 cut(s) 10, 31, 134, 205, 263, 286, 521
AvaII GGWCC 1 cut(s) 252
BalI TGGCCA 1 cut(s) 400
BamHI GGATCC 3 cut(s) 450, 512, 567
BanII GRGCYC 1 cut(s) 636
BbsI GAAGAC 1 cut(s) 426
BbvI GCAGC 1 cut(s) 35
BccI CCATC 4 cut(s) 44, 85, 317, 503
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 2 cut(s) 119, 275
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 4 cut(s) 317, 416, 585, 637
BfmI CTRYAG 1 cut(s) 579
BisI GCNGC 2 cut(s) 49, 546
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 2 cut(s) 50, 547
Bme1390I CCNGG 2 cut(s) 119, 275
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 4 cut(s) 279, 452, 514, 569
BmrFI CCNGG 2 cut(s) 119, 275
BmsI GCATC 3 cut(s) 171, 365, 547
BpiI GAAGAC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 164
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 118, 533
BsaXI ACNNNNNCTCC 2 cut(s) 150, 180
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 520
BseBI CCWGG 2 cut(s) 119, 275
BseCI ATCGAT 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 118, 533
BseGI GGATG 4 cut(s) 77, 380, 514, 538
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMI GCAATG 1 cut(s) 520
BseMII CTCAG 1 cut(s) 25
BseRI GAGGAG 3 cut(s) 161, 171, 332
BseXI GCAGC 1 cut(s) 35
BseYI CCCAGC 2 cut(s) 184, 264
BshFI GGCC 2 cut(s) 400, 465
BshVI ATCGAT 1 cut(s) 135
BsiSI CCGG 1 cut(s) 542
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 153
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 2 cut(s) 400, 465
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 3 cut(s) 281, 517, 545
BspANI GGCC 2 cut(s) 400, 465
BspCNI CTCAG 1 cut(s) 24
BspDI ATCGAT 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 279, 452, 514, 569
BspPI GGATC 7 cut(s) 229, 445, 458, 507, 520, 562, 575
BsrDI GCAATG 1 cut(s) 520
BssECI CCNNGG 2 cut(s) 118, 533
BssMI GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
BssNAI GTATAC 1 cut(s) 389
Bst1107I GTATAC 1 cut(s) 389
Bst2UI CCWGG 2 cut(s) 119, 275
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 413
BstDEI CTNAG 2 cut(s) 5, 11
BstDSI CCRYGG 1 cut(s) 533
BstF5I GGATG 4 cut(s) 77, 380, 514, 538
BstKTI GATC 7 cut(s) 139, 198, 205, 237, 453, 515, 570
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
BstNI CCWGG 2 cut(s) 119, 275
BstNSI RCATGY 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 117, 273
BstSFI CTRYAG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 35
BstV2I GAAGAC 1 cut(s) 426
BstX2I RGATCY 4 cut(s) 234, 450, 512, 567
BstXI CCANNNNNNTGG 1 cut(s) 461
BstYI RGATCY 4 cut(s) 234, 450, 512, 567
BstZ17I GTATAC 1 cut(s) 389
Bsu15I ATCGAT 1 cut(s) 135
BsuRI GGCC 2 cut(s) 400, 465
BsuTUI ATCGAT 1 cut(s) 135
BtgI CCRYGG 1 cut(s) 533
BtsCI GGATG 4 cut(s) 77, 380, 514, 538
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 413
CaiI CAGNNNCTG 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 252
ClaI ATCGAT 1 cut(s) 135
CviAII CATG 5 cut(s) 106, 190, 360, 370, 461
DdeI CTNAG 2 cut(s) 5, 11
DpnI GATC 7 cut(s) 138, 197, 204, 236, 452, 514, 569
DpnII GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
EaeI YGGCCR 1 cut(s) 398
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 636
Eco32I GATATC 1 cut(s) 445
Eco47I GGWCC 1 cut(s) 252
EcoRII CCWGG 2 cut(s) 117, 273
EcoRV GATATC 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 636
FaeI CATG 5 cut(s) 109, 193, 363, 373, 464
FaiI YATR 7 cut(s) 107, 191, 361, 371, 389, 462, 558
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 105, 189, 359, 369, 460
FauI CCCGC 1 cut(s) 524
FblI GTMKAC 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 49, 546
FokI GGATG 4 cut(s) 64, 387, 521, 525
FriOI GRGCYC 1 cut(s) 636
Fsp4HI GCNGC 2 cut(s) 49, 546
FspBI CTAG 4 cut(s) 317, 416, 585, 637
GluI GCNGC 2 cut(s) 49, 546
GsaI CCCAGC 2 cut(s) 188, 268
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 2 cut(s) 400, 465
HapII CCGG 1 cut(s) 542
Hin1II CATG 5 cut(s) 109, 193, 363, 373, 464
HindIII AAGCTT 2 cut(s) 246, 590
HinfI GANTC 2 cut(s) 241, 323
HpaII CCGG 1 cut(s) 542
HphI GGTGA 7 cut(s) 10, 31, 134, 205, 263, 286, 521
Hpy166II GTNNAC 4 cut(s) 111, 271, 304, 389
Hpy188I TCNGA 3 cut(s) 180, 202, 480
Hpy188III TCNNGA 4 cut(s) 143, 238, 317, 448
Hpy8I GTNNAC 4 cut(s) 111, 271, 304, 389
Hpy99I CGWCG 1 cut(s) 226
HpyAV CCTTC 2 cut(s) 107, 440
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 378, 491
HpyF3I CTNAG 2 cut(s) 5, 11
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 5 cut(s) 109, 193, 363, 373, 464
Kzo9I GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
LmnI GCTCC 2 cut(s) 345, 560
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 3 cut(s) 171, 365, 547
MaeI CTAG 4 cut(s) 317, 416, 585, 637
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 16, 292
MalI GATC 7 cut(s) 138, 197, 204, 236, 452, 514, 569
MboI GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
MboII GAAGA 5 cut(s) 57, 60, 131, 210, 431
MfeI CAATTG 1 cut(s) 402
MflI RGATCY 4 cut(s) 234, 450, 512, 567
MhlI GDGCHC 1 cut(s) 636
MlsI TGGCCA 1 cut(s) 400
MluCI AATT 1 cut(s) 402
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 2 cut(s) 235, 317
MmeI TCCRAC 1 cut(s) 420
MnlI CCTC 9 cut(s) 20, 139, 142, 149, 183, 219, 353, 476, 480
Mox20I TGGCCA 1 cut(s) 400
MroXI GAANNNNTTC 2 cut(s) 282, 423
MscI TGGCCA 1 cut(s) 400
MseI TTAA 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 400
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 2 cut(s) 119, 275
MunI CAATTG 1 cut(s) 402
MvaI CCWGG 2 cut(s) 119, 275
NdeII GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
NlaIII CATG 5 cut(s) 109, 193, 363, 373, 464
NlaIV GGNNCC 4 cut(s) 279, 452, 514, 569
NmuCI GTSAC 2 cut(s) 16, 292
NspI RCATGY 1 cut(s) 109
PciI ACATGT 1 cut(s) 105
PdmI GAANNNNTTC 2 cut(s) 282, 423
PkrI GCNGC 2 cut(s) 50, 547
PleI GAGTC 2 cut(s) 235, 317
PpsI GAGTC 2 cut(s) 235, 317
PscI ACATGT 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 117, 273
PspFI CCCAGC 2 cut(s) 184, 264
PspGI CCWGG 2 cut(s) 117, 273
PspN4I GGNNCC 4 cut(s) 279, 452, 514, 569
PspPI GGNCC 1 cut(s) 252
PstNI CAGNNNCTG 1 cut(s) 184
PsuI RGATCY 4 cut(s) 234, 450, 512, 567
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 49, 546
Sau3AI GATC 7 cut(s) 136, 195, 202, 234, 450, 512, 567
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 2 cut(s) 235, 317
ScrFI CCNGG 2 cut(s) 119, 275
SduI GDGCHC 1 cut(s) 636
SetI ASST 7 cut(s) 250, 276, 294, 342, 565, 586, 594
SfaNI GCATC 3 cut(s) 171, 365, 547
SfcI CTRYAG 1 cut(s) 579
SinI GGWCC 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 243
SmoI CTYRAG 1 cut(s) 243
Sse9I AATT 1 cut(s) 402
SsiI CCGC 3 cut(s) 281, 517, 545
SspMI CTAG 4 cut(s) 317, 416, 585, 637
StyD4I CCNGG 2 cut(s) 117, 273
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 135, 221
TaqII GACCGA 1 cut(s) 269
TasI AATT 1 cut(s) 402
TauI GCSGC 1 cut(s) 548
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 16, 292
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 2 cut(s) 16, 292
TspDTI ATGAA 3 cut(s) 348, 422, 449
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 252
XbaI TCTAGA 1 cut(s) 316
XceI RCATGY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 282, 423
XspI CTAG 4 cut(s) 317, 416, 585, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.