Rw5G042230

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002877
Physical Location & Seq
Reverse (-)
74061219 .. 74062476
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G042230.1

Sequence Viewer

Length: 720 bp
ATGATCACATGGGGTGGGAACTTTCTGGATCATCAGCATCTTGGGAACTTAATGTGCTTAGAAGAAGCTAAGATTTTTCTGTTCCCTGACTTAGATGACTTCAAGAACCCATTTGAGGTTCTCTGCAGTATTCGCGTGGCTAAAGCTCTTGTCCTAAACGAAGAGACTACAAAGGCTTTTTTCATGGAAAGTTCGATGCCATTACCATTAGATAATATTCATGACTTGACTTTGCATGTTGGAAACGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTACTTTGAATACTTTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTTTAATGAAATTGAGGAAGAGGATTATAATTATGAGGAAGAGGACAACGGAACTGAGCAGGAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAGTGCTCCCAAGTTTGATGTGGAATATTGGAAATCCCAAAACCTTAATTTTACTTGTGAGCTAAAGGAGGTGAAACTGGAGATTGTGGAGGGTAATGATAATGAATTGGATTTAGCAAGGTACATTCTGGAGCATGCTCAGAAATTGAAGAAAATGGTGATTCTTCATTCACCGCAGCATCCAGATATTTTGGAAATGGTAAGAAAAAGCAAGATGATATCCACTGCAACAGTGATTTTGCAAGAAGTAGTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

239

Amino Acids

27.32

Weight (kDa)

4.37

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 175 - 208 7.8e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 381
AccII CGCG 1 cut(s) 135
AciI CCGC 1 cut(s) 635
AclWI GGATC 1 cut(s) 36
AfaI GTAC 1 cut(s) 584
AfiI CCNNNNNNNGG 2 cut(s) 115, 271
AgsI TTSAA 3 cut(s) 103, 304, 610
AluBI AGCT 3 cut(s) 68, 146, 523
AluI AGCT 3 cut(s) 68, 146, 523
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 3 cut(s) 158, 280, 419
AlwI GGATC 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 637
AsuHPI GGTGA 3 cut(s) 544, 624, 631
Bbv12I GWGCWC 1 cut(s) 469
BbvI GCAGC 1 cut(s) 649
BccI CCATC 1 cut(s) 434
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 3 cut(s) 158, 280, 419
BfmI CTRYAG 2 cut(s) 124, 429
BisI GCNGC 1 cut(s) 638
BlsI GCNGC 1 cut(s) 639
BmsI GCATC 3 cut(s) 46, 186, 649
BpmI CTGGAG 2 cut(s) 560, 611
BsaI GGTCTC 1 cut(s) 280
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 271
Bse1I ACTGG 1 cut(s) 543
Bse3DI GCAATG 1 cut(s) 276
BseGI GGATG 2 cut(s) 445, 640
BseLI CCNNNNNNNGG 2 cut(s) 115, 271
BseMI GCAATG 1 cut(s) 276
BseMII CTCAG 3 cut(s) 399, 441, 614
BseNI ACTGG 1 cut(s) 543
BseXI GCAGC 1 cut(s) 649
BseYI CCCAGC 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 135
BsiHKAI GWGCWC 1 cut(s) 469
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 115, 271
BsmAI GTCTC 3 cut(s) 158, 280, 419
BsmFI GGGAC 1 cut(s) 248
Bso31I GGTCTC 1 cut(s) 280
Bsp1286I GDGCHC 1 cut(s) 469
Bsp143I GATC 2 cut(s) 3, 28
BspACI CCGC 1 cut(s) 635
BspCNI CTCAG 3 cut(s) 400, 442, 613
BspFNI CGCG 1 cut(s) 135
BspHI TCATGA 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 128
BspPI GGATC 1 cut(s) 36
BspTNI GGTCTC 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 276
BsrI ACTGG 1 cut(s) 543
BssMI GATC 2 cut(s) 3, 28
Bst4CI ACNGT 1 cut(s) 694
Bst6I CTCTTC 4 cut(s) 156, 366, 387, 429
BstC8I GCNNGC 2 cut(s) 339, 597
BstDEI CTNAG 6 cut(s) 58, 69, 91, 408, 450, 600
BstF5I GGATG 2 cut(s) 445, 640
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 2 cut(s) 6, 31
BstMAI GTCTC 3 cut(s) 158, 280, 419
BstMBI GATC 2 cut(s) 3, 28
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNSI RCATGY 2 cut(s) 239, 599
BstSFI CTRYAG 2 cut(s) 124, 429
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 649
BtsCI GGATG 2 cut(s) 445, 640
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 684, 699
Cac8I GCNNGC 2 cut(s) 339, 597
CciI TCATGA 1 cut(s) 220
Csp6I GTAC 1 cut(s) 583
CviAII CATG 5 cut(s) 9, 184, 221, 236, 596
CviJI RGCY 5 cut(s) 68, 140, 146, 176, 523
CviKI_1 RGCY 5 cut(s) 68, 140, 146, 176, 523
CviQI GTAC 1 cut(s) 583
DdeI CTNAG 6 cut(s) 58, 69, 91, 408, 450, 600
DpnI GATC 2 cut(s) 5, 30
DpnII GATC 2 cut(s) 3, 28
Eam1104I CTCTTC 4 cut(s) 156, 366, 387, 429
EarI CTCTTC 4 cut(s) 156, 366, 387, 429
Eco31I GGTCTC 1 cut(s) 280
Eco32I GATATC 1 cut(s) 681
EcoRV GATATC 1 cut(s) 681
EcoT22I ATGCAT 1 cut(s) 317
FaeI CATG 5 cut(s) 12, 187, 224, 239, 599
FaqI GGGAC 1 cut(s) 248
FatI CATG 5 cut(s) 8, 183, 220, 235, 595
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 638
FokI GGATG 2 cut(s) 452, 627
Fsp4HI GCNGC 1 cut(s) 638
GluI GCNGC 1 cut(s) 638
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 2 cut(s) 560, 611
Hin1II CATG 5 cut(s) 12, 187, 224, 239, 599
HinfI GANTC 2 cut(s) 291, 622
HphI GGTGA 3 cut(s) 544, 624, 631
Hpy188I TCNGA 2 cut(s) 287, 603
Hpy188III TCNNGA 5 cut(s) 26, 103, 221, 590, 644
HpyAV CCTTC 1 cut(s) 449
HpyCH4III ACNGT 1 cut(s) 694
HpyCH4IV ACGT 2 cut(s) 246, 320
HpyCH4V TGCA 6 cut(s) 126, 235, 315, 446, 689, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 6 cut(s) 58, 69, 91, 408, 450, 600
HpySE526I ACGT 2 cut(s) 246, 320
Hsp92II CATG 5 cut(s) 12, 187, 224, 239, 599
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 28
LmnI GCTCC 2 cut(s) 472, 592
LpnPI CCDG 7 cut(s) 11, 99, 279, 398, 524, 575, 657
Lsp1109I GCAGC 1 cut(s) 649
LweI GCATC 3 cut(s) 46, 186, 649
MaeII ACGT 2 cut(s) 246, 320
MaeIII GTNAC 1 cut(s) 325
MalI GATC 2 cut(s) 5, 30
MboI GATC 2 cut(s) 3, 28
MboII GAAGA 7 cut(s) 74, 173, 383, 404, 446, 617, 622
MfeI CAATTG 1 cut(s) 342
MhlI GDGCHC 1 cut(s) 469
MluCI AATT 6 cut(s) 342, 363, 382, 508, 566, 605
MmeI TCCRAC 1 cut(s) 220
Mph1103I ATGCAT 1 cut(s) 317
MseI TTAA 3 cut(s) 50, 357, 507
MunI CAATTG 1 cut(s) 342
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 2 cut(s) 3, 28
NlaIII CATG 5 cut(s) 12, 187, 224, 239, 599
NmuCI GTSAC 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 317
NspI RCATGY 2 cut(s) 239, 599
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 220
PfeI GAWTC 2 cut(s) 291, 622
PflFI GACNNNGTC 1 cut(s) 260
PkrI GCNGC 1 cut(s) 639
PsiI TTATAA 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 265
PstI CTGCAG 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 260
RsaI GTAC 1 cut(s) 584
RsaNI GTAC 1 cut(s) 583
SaqAI TTAA 3 cut(s) 50, 357, 507
SatI GCNGC 1 cut(s) 638
Sau3AI GATC 2 cut(s) 3, 28
SduI GDGCHC 1 cut(s) 469
SetI ASST 9 cut(s) 70, 120, 148, 249, 323, 507, 525, 534, 584
SfaNI GCATC 3 cut(s) 46, 186, 649
SfcI CTRYAG 2 cut(s) 124, 429
SphI GCATGC 1 cut(s) 599
Sse9I AATT 6 cut(s) 342, 363, 382, 508, 566, 605
SsiI CCGC 1 cut(s) 635
SspI AATATT 2 cut(s) 217, 488
TaaI ACNGT 1 cut(s) 694
TaiI ACGT 2 cut(s) 249, 323
TaqI TCGA 1 cut(s) 194
TasI AATT 6 cut(s) 342, 363, 382, 508, 566, 605
TfiI GAWTC 2 cut(s) 291, 622
Tru1I TTAA 3 cut(s) 50, 357, 507
Tru9I TTAA 3 cut(s) 50, 357, 507
TscAI CASTG 2 cut(s) 691, 699
TseFI GTSAC 1 cut(s) 325
TseI GCWGC 1 cut(s) 637
Tsp45I GTSAC 1 cut(s) 325
TspDTI ATGAA 5 cut(s) 172, 209, 375, 579, 617
TspGWI ACGGA 1 cut(s) 417
TspRI CASTG 2 cut(s) 691, 699
Tth111I GACNNNGTC 1 cut(s) 260
XceI RCATGY 2 cut(s) 239, 599
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.