Rh5DG483800

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002877
Physical Location & Seq
Reverse (-)
76169349 .. 76169987
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG483800.1

Sequence Viewer

Length: 537 bp
ATGGAAAGTTCGATGCCATTACCATTAGATAATATTCATGACTTGACTTTGCATGTTAGAAGCGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTACTTTGAATACTTTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTATAATGAAACTGAGGAAGAGGATAATAATTATGAGGAAGAGGACAACGGAACTGAGCAGGAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAATGCTCCCAAGTTTGATGTGGAATATTGGAAATCCCAAAACCTTAATTTTACTAGTGAGCTAAAGGAGGTGAAACTGGAGATTGTGGAGGGTAATGATAATGAATTGGATTTAGCAAGGTACATTCTGGAGCATGCTCAGAAATTGAAGAAAATGGTGATTCTTCATTCACCGCAGCATCCGGATATTTTGGAAATGGTAAGAAAAAGCAAGATGATATCCACTGCAACAGTGGTTTTGCAAGAAGTAGTATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

178

Amino Acids

20.33

Weight (kDa)

4.33

Isoelectric Point (pI)

58.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 111 - 147 6.7e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 460
AciI CCGC 1 cut(s) 452
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 121, 427
AhlI ACTAGT 1 cut(s) 332
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw26I GTCTC 2 cut(s) 97, 236
Aor13HI TCCGGA 1 cut(s) 460
ApeKI GCWGC 1 cut(s) 454
AsuHPI GGTGA 3 cut(s) 361, 441, 448
BbvI GCAGC 1 cut(s) 466
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 2 cut(s) 97, 236
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 1 cut(s) 455
BlsI GCNGC 1 cut(s) 456
BmsI GCATC 2 cut(s) 3, 466
BpmI CTGGAG 2 cut(s) 377, 428
BsaI GGTCTC 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 360
Bse3DI GCAATG 1 cut(s) 93
BseAI TCCGGA 1 cut(s) 460
BseGI GGATG 2 cut(s) 262, 457
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 4 cut(s) 174, 216, 258, 431
BseNI ACTGG 1 cut(s) 360
BseXI GCAGC 1 cut(s) 466
BseYI CCCAGC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 2 cut(s) 97, 236
BsmFI GGGAC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 97
Bsp13I TCCGGA 1 cut(s) 460
BspACI CCGC 1 cut(s) 452
BspCNI CTCAG 4 cut(s) 175, 217, 259, 430
BspEI TCCGGA 1 cut(s) 460
BspHI TCATGA 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 1 cut(s) 360
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 3 cut(s) 183, 204, 246
BstC8I GCNNGC 2 cut(s) 156, 414
BstDEI CTNAG 4 cut(s) 183, 225, 267, 417
BstF5I GGATG 2 cut(s) 262, 457
BstMAI GTCTC 2 cut(s) 97, 236
BstNSI RCATGY 2 cut(s) 56, 416
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 466
BtsCI GGATG 2 cut(s) 262, 457
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 2 cut(s) 501, 516
Cac8I GCNNGC 2 cut(s) 156, 414
CciI TCATGA 1 cut(s) 37
Csp6I GTAC 1 cut(s) 400
CviAII CATG 3 cut(s) 38, 53, 413
CviJI RGCY 1 cut(s) 340
CviKI_1 RGCY 1 cut(s) 340
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 4 cut(s) 183, 225, 267, 417
Eam1104I CTCTTC 3 cut(s) 183, 204, 246
EarI CTCTTC 3 cut(s) 183, 204, 246
Eco31I GGTCTC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 498
EcoRV GATATC 1 cut(s) 498
EcoT22I ATGCAT 1 cut(s) 134
FaeI CATG 3 cut(s) 41, 56, 416
FaiI YATR 8 cut(s) 39, 54, 130, 134, 148, 174, 204, 414
FaqI GGGAC 1 cut(s) 65
FatI CATG 3 cut(s) 37, 52, 412
Fnu4HI GCNGC 1 cut(s) 455
FokI GGATG 2 cut(s) 269, 444
Fsp4HI GCNGC 1 cut(s) 455
FspBI CTAG 1 cut(s) 333
GluI GCNGC 1 cut(s) 455
GsaI CCCAGC 1 cut(s) 86
GsuI CTGGAG 2 cut(s) 377, 428
HapII CCGG 1 cut(s) 461
Hin1II CATG 3 cut(s) 41, 56, 416
HinfI GANTC 2 cut(s) 108, 439
HpaII CCGG 1 cut(s) 461
HphI GGTGA 3 cut(s) 361, 441, 448
Hpy188I TCNGA 2 cut(s) 104, 420
Hpy188III TCNNGA 3 cut(s) 38, 407, 461
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 5 cut(s) 52, 132, 263, 506, 520
HpyF3I CTNAG 4 cut(s) 183, 225, 267, 417
HpySE526I ACGT 1 cut(s) 137
Hsp92II CATG 3 cut(s) 41, 56, 416
Kpn2I TCCGGA 1 cut(s) 460
LmnI GCTCC 2 cut(s) 289, 409
LpnPI CCDG 5 cut(s) 96, 215, 341, 392, 474
Lsp1109I GCAGC 1 cut(s) 466
LweI GCATC 2 cut(s) 3, 466
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 1 cut(s) 142
MboII GAAGA 5 cut(s) 200, 221, 263, 434, 439
MfeI CAATTG 1 cut(s) 159
MluCI AATT 5 cut(s) 159, 199, 325, 383, 422
Mph1103I ATGCAT 1 cut(s) 134
MroI TCCGGA 1 cut(s) 460
MseI TTAA 1 cut(s) 324
MspI CCGG 1 cut(s) 461
MunI CAATTG 1 cut(s) 159
NlaIII CATG 3 cut(s) 41, 56, 416
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 134
NspI RCATGY 2 cut(s) 56, 416
PaeI GCATGC 1 cut(s) 416
PagI TCATGA 1 cut(s) 37
PfeI GAWTC 2 cut(s) 108, 439
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 456
PspFI CCCAGC 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 455
SetI ASST 5 cut(s) 140, 324, 342, 351, 401
SfaNI GCATC 2 cut(s) 3, 466
SfcI CTRYAG 1 cut(s) 246
SpeI ACTAGT 1 cut(s) 332
SphI GCATGC 1 cut(s) 416
Sse9I AATT 5 cut(s) 159, 199, 325, 383, 422
SsiI CCGC 1 cut(s) 452
SspI AATATT 2 cut(s) 34, 305
SspMI CTAG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 1 cut(s) 140
TaqI TCGA 1 cut(s) 11
TasI AATT 5 cut(s) 159, 199, 325, 383, 422
TfiI GAWTC 2 cut(s) 108, 439
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 2 cut(s) 508, 516
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 454
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 4 cut(s) 26, 192, 396, 434
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 2 cut(s) 508, 516
Tth111I GACNNNGTC 1 cut(s) 77
XceI RCATGY 2 cut(s) 56, 416
XcmI CCANNNNNNNNNTGG 2 cut(s) 295, 508
XspI CTAG 1 cut(s) 333
Zsp2I ATGCAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.