Rh2DG546000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002877
Physical Location & Seq
Forward (+)
77493308 .. 77494761
1454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG546000.1

Sequence Viewer

Length: 1011 bp
ATGGTTGAAGATGACCGGTTTTTCGAATGGATATCATCTTCCTGCAAATGCATCAAGGAATTACGTCTTGAAAATGTTAGTGGAATAAAAGATATCACGATTGAGAGCTCGTCTTTGGAAATATTTATTTATCTGTTTCCTTTTAACAATTATGAGCTCTGGGATCTTAACATTTCAGGGGAGAAACTTGAAGAAATAATAATACTTTGGCATTTTGATTCGAATGATGATTCAAGACGTGGTCTTATACCTCGCATCAGGTCGCTAAATATTCTCGCCCCAAAGCTTAAAAAGATCACGTGGGGTGGGAACTTTCTGGATCATCAGCATCTTGGGAACTTGATGTGCTTAGAAGAAGCTAAGATTTTTCTGTTCCCCGACTTAGATGACTTCAATAACCCATTTGAGGTTCTCTGCAGTATTCGCGTGGTTAAAGCTCTTGTCCTAAACGAAGAGACTACAAAGGCTTTTTTCATGGAAAGTTCGATGCCATTACGATTAGATAATATTCATGACTTGACTTTACATGTTAGAAGCGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTACTTTGAATACTCTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTATAATGAAACTGAGGAAGAGGATAATAATTATGAGGAAGAGGACAACGGAACCGAGCAGAAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAATGCTCCCAAGTTTGATGTGGAATATTGGAAATCCCAAAACCCTAATTTTACTTGTGAGCTAAAGGAGGTGAAACTGGAGATTGTGGAGGGTAATAATAATGAATTGGATTTAGCAAGGTACATTCTGGAGCATGCTCAGAAATTGAAGAAAATGGTGATTCTTCATTCACCGCAGCATCCGGATATTTTGGAAATGGTAAGAAAAAGCAAGATGATATCCACTGCAACAGTGGTTTTGCAAGAAGTAATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

336

Amino Acids

38.89

Weight (kDa)

4.61

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 272 - 305 1.8e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 426
AccIII TCCGGA 1 cut(s) 934
AciI CCGC 1 cut(s) 926
AclWI GGATC 2 cut(s) 171, 327
AcvI CACGTG 1 cut(s) 300
AfaI GTAC 1 cut(s) 875
AfiI CCNNNNNNNGG 2 cut(s) 406, 562
AflIII ACRYGT 1 cut(s) 526
AgeI ACCGGT 1 cut(s) 15
AgsI TTSAA 7 cut(s) 8, 71, 191, 234, 394, 595, 901
AjiI CACGTC 1 cut(s) 239
AluBI AGCT 6 cut(s) 108, 157, 286, 359, 437, 814
AluI AGCT 6 cut(s) 108, 157, 286, 359, 437, 814
Alw21I GWGCWC 2 cut(s) 110, 159
Alw26I GTCTC 3 cut(s) 449, 571, 710
AlwI GGATC 2 cut(s) 171, 327
Aor13HI TCCGGA 1 cut(s) 934
ApeKI GCWGC 1 cut(s) 928
ArsI GACNNNNNNTTYG 1 cut(s) 37
AsiGI ACCGGT 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 835, 915, 922
AsuII TTCGAA 2 cut(s) 24, 221
BanII GRGCYC 2 cut(s) 110, 159
BbrPI CACGTG 1 cut(s) 300
Bbv12I GWGCWC 2 cut(s) 110, 159
BbvI GCAGC 1 cut(s) 940
BccI CCATC 1 cut(s) 725
BcoDI GTCTC 3 cut(s) 449, 571, 710
BfmI CTRYAG 2 cut(s) 415, 720
BisI GCNGC 1 cut(s) 929
BlsI GCNGC 1 cut(s) 930
BmgBI CACGTC 1 cut(s) 239
BmiI GGNNCC 1 cut(s) 697
BmsI GCATC 5 cut(s) 60, 264, 337, 477, 940
BpmI CTGGAG 2 cut(s) 851, 902
Bpu14I TTCGAA 2 cut(s) 24, 221
BsaAI YACGTR 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 571
BsaWI WCCGGW 2 cut(s) 15, 934
Bsc4I CCNNNNNNNGG 2 cut(s) 406, 562
Bse118I RCCGGY 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 834
Bse3DI GCAATG 1 cut(s) 567
BseAI TCCGGA 1 cut(s) 934
BseGI GGATG 2 cut(s) 736, 931
BseLI CCNNNNNNNGG 2 cut(s) 406, 562
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 3 cut(s) 648, 732, 905
BseNI ACTGG 1 cut(s) 834
BseXI GCAGC 1 cut(s) 940
BseYI CCCAGC 1 cut(s) 556
Bsh1236I CGCG 1 cut(s) 426
BshTI ACCGGT 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 110, 159
BsiSI CCGG 2 cut(s) 16, 935
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 2 cut(s) 406, 562
BsmAI GTCTC 3 cut(s) 449, 571, 710
BsmFI GGGAC 1 cut(s) 539
Bso31I GGTCTC 1 cut(s) 571
Bsp119I TTCGAA 2 cut(s) 24, 221
Bsp1286I GDGCHC 2 cut(s) 110, 159
Bsp13I TCCGGA 1 cut(s) 934
Bsp143I GATC 3 cut(s) 163, 294, 319
BspACI CCGC 1 cut(s) 926
BspCNI CTCAG 3 cut(s) 649, 733, 904
BspEI TCCGGA 1 cut(s) 934
BspFNI CGCG 1 cut(s) 426
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 697
BspMAI CTGCAG 1 cut(s) 419
BspPI GGATC 2 cut(s) 171, 327
BspT104I TTCGAA 2 cut(s) 24, 221
BspTNI GGTCTC 1 cut(s) 571
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 15
BsrI ACTGG 1 cut(s) 834
BssAI RCCGGY 1 cut(s) 15
BssMI GATC 3 cut(s) 163, 294, 319
Bst4CI ACNGT 1 cut(s) 985
Bst6I CTCTTC 4 cut(s) 447, 657, 678, 720
BstBAI YACGTR 1 cut(s) 300
BstBI TTCGAA 2 cut(s) 24, 221
BstC8I GCNNGC 2 cut(s) 630, 888
BstDEI CTNAG 6 cut(s) 349, 360, 382, 657, 741, 891
BstF5I GGATG 2 cut(s) 736, 931
BstFNI CGCG 1 cut(s) 426
BstKTI GATC 3 cut(s) 166, 297, 322
BstMAI GTCTC 3 cut(s) 449, 571, 710
BstMBI GATC 3 cut(s) 163, 294, 319
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstNSI RCATGY 2 cut(s) 530, 890
BstSFI CTRYAG 2 cut(s) 415, 720
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 1 cut(s) 940
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BtrI CACGTC 1 cut(s) 239
BtsCI GGATG 2 cut(s) 736, 931
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 2 cut(s) 975, 990
Cac8I GCNNGC 2 cut(s) 630, 888
CciI TCATGA 1 cut(s) 511
Cfr10I RCCGGY 1 cut(s) 15
Csp6I GTAC 1 cut(s) 874
CspAI ACCGGT 1 cut(s) 15
CviAII CATG 4 cut(s) 475, 512, 527, 887
CviJI RGCY 7 cut(s) 108, 157, 286, 359, 437, 467, 814
CviKI_1 RGCY 7 cut(s) 108, 157, 286, 359, 437, 467, 814
CviQI GTAC 1 cut(s) 874
DdeI CTNAG 6 cut(s) 349, 360, 382, 657, 741, 891
DpnI GATC 3 cut(s) 165, 296, 321
DpnII GATC 3 cut(s) 163, 294, 319
Eam1104I CTCTTC 4 cut(s) 447, 657, 678, 720
EarI CTCTTC 4 cut(s) 447, 657, 678, 720
Ecl136II GAGCTC 2 cut(s) 108, 157
Eco24I GRGCYC 2 cut(s) 110, 159
Eco31I GGTCTC 1 cut(s) 571
Eco32I GATATC 3 cut(s) 33, 94, 972
Eco53kI GAGCTC 2 cut(s) 108, 157
Eco72I CACGTG 1 cut(s) 300
EcoICRI GAGCTC 2 cut(s) 108, 157
EcoRV GATATC 3 cut(s) 33, 94, 972
EcoT22I ATGCAT 2 cut(s) 53, 608
EcoT38I GRGCYC 2 cut(s) 110, 159
FaeI CATG 4 cut(s) 478, 515, 530, 890
FaqI GGGAC 1 cut(s) 539
FatI CATG 4 cut(s) 474, 511, 526, 886
Fnu4HI GCNGC 1 cut(s) 929
FokI GGATG 2 cut(s) 743, 918
FriOI GRGCYC 2 cut(s) 110, 159
Fsp4HI GCNGC 1 cut(s) 929
GluI GCNGC 1 cut(s) 929
GsaI CCCAGC 1 cut(s) 560
GsuI CTGGAG 2 cut(s) 851, 902
HapII CCGG 2 cut(s) 16, 935
Hin1II CATG 4 cut(s) 478, 515, 530, 890
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 4 cut(s) 218, 230, 582, 913
HpaII CCGG 2 cut(s) 16, 935
HphI GGTGA 3 cut(s) 835, 915, 922
Hpy188I TCNGA 2 cut(s) 578, 894
Hpy188III TCNNGA 7 cut(s) 68, 97, 234, 317, 512, 881, 935
HpyAV CCTTC 1 cut(s) 740
HpyCH4III ACNGT 1 cut(s) 985
HpyCH4IV ACGT 4 cut(s) 64, 238, 299, 611
HpyCH4V TGCA 7 cut(s) 45, 51, 417, 606, 737, 980, 994
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 6 cut(s) 349, 360, 382, 657, 741, 891
HpySE526I ACGT 4 cut(s) 64, 238, 299, 611
Hsp92II CATG 4 cut(s) 478, 515, 530, 890
Kpn2I TCCGGA 1 cut(s) 934
Kzo9I GATC 3 cut(s) 163, 294, 319
LmnI GCTCC 2 cut(s) 763, 883
Lsp1109I GCAGC 1 cut(s) 940
LweI GCATC 5 cut(s) 60, 264, 337, 477, 940
MaeII ACGT 4 cut(s) 64, 238, 299, 611
MaeIII GTNAC 1 cut(s) 616
MalI GATC 3 cut(s) 165, 296, 321
MboI GATC 3 cut(s) 163, 294, 319
MfeI CAATTG 1 cut(s) 633
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 110, 159
MluCI AATT 7 cut(s) 59, 148, 633, 673, 799, 857, 896
Mph1103I ATGCAT 2 cut(s) 53, 608
MroI TCCGGA 1 cut(s) 934
MseI TTAA 4 cut(s) 144, 168, 288, 432
MspI CCGG 2 cut(s) 16, 935
MunI CAATTG 1 cut(s) 633
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 1 cut(s) 423
NdeII GATC 3 cut(s) 163, 294, 319
NlaIII CATG 4 cut(s) 478, 515, 530, 890
NlaIV GGNNCC 1 cut(s) 697
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 2 cut(s) 53, 608
NspI RCATGY 2 cut(s) 530, 890
NspV TTCGAA 2 cut(s) 24, 221
PaeI GCATGC 1 cut(s) 890
PagI TCATGA 1 cut(s) 511
PciI ACATGT 1 cut(s) 526
PfeI GAWTC 4 cut(s) 218, 230, 582, 913
PflFI GACNNNGTC 2 cut(s) 240, 551
PinAI ACCGGT 1 cut(s) 15
PkrI GCNGC 1 cut(s) 930
PmaCI CACGTG 1 cut(s) 300
PmlI CACGTG 1 cut(s) 300
Ppu21I YACGTR 1 cut(s) 300
PscI ACATGT 1 cut(s) 526
Psp124BI GAGCTC 2 cut(s) 110, 159
PspCI CACGTG 1 cut(s) 300
PspFI CCCAGC 1 cut(s) 556
PspN4I GGNNCC 1 cut(s) 697
PstI CTGCAG 1 cut(s) 419
PsuI RGATCY 1 cut(s) 163
PsyI GACNNNGTC 2 cut(s) 240, 551
RsaI GTAC 1 cut(s) 875
RsaNI GTAC 1 cut(s) 874
SacI GAGCTC 2 cut(s) 110, 159
SaqAI TTAA 4 cut(s) 144, 168, 288, 432
SatI GCNGC 1 cut(s) 929
Sau3AI GATC 3 cut(s) 163, 294, 319
SduI GDGCHC 2 cut(s) 110, 159
SfaNI GCATC 5 cut(s) 60, 264, 337, 477, 940
SfcI CTRYAG 2 cut(s) 415, 720
SfuI TTCGAA 2 cut(s) 24, 221
SphI GCATGC 1 cut(s) 890
Sse9I AATT 7 cut(s) 59, 148, 633, 673, 799, 857, 896
SsiI CCGC 1 cut(s) 926
SspI AATATT 5 cut(s) 123, 271, 508, 779, 1005
SstI GAGCTC 2 cut(s) 110, 159
TaaI ACNGT 1 cut(s) 985
TaiI ACGT 4 cut(s) 67, 241, 302, 614
TaqI TCGA 3 cut(s) 24, 221, 485
TasI AATT 7 cut(s) 59, 148, 633, 673, 799, 857, 896
TfiI GAWTC 4 cut(s) 218, 230, 582, 913
Tru1I TTAA 4 cut(s) 144, 168, 288, 432
Tru9I TTAA 4 cut(s) 144, 168, 288, 432
TscAI CASTG 2 cut(s) 982, 990
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 1 cut(s) 928
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 5 cut(s) 463, 500, 666, 870, 908
TspGWI ACGGA 1 cut(s) 708
TspRI CASTG 2 cut(s) 982, 990
Tth111I GACNNNGTC 2 cut(s) 240, 551
XceI RCATGY 2 cut(s) 530, 890
XcmI CCANNNNNNNNNTGG 2 cut(s) 769, 982
Zsp2I ATGCAT 2 cut(s) 53, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.