Rh7BG348100

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002877
Physical Location & Seq
Reverse (-)
36321077 .. 36322556
1480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG348100.1

Sequence Viewer

Length: 669 bp
ATGCTATGGTTGAAGATGACCGGTTTTTCGAATGGATATCATCTTCCTGCAAATGCATCAAGGAATTACGTCTTGAAAATGTCGCTAAATATTCTCGCCCCAAAGCTTAAAAAGATCACGTGGGGTGGGAACTTTCTGGATCATCAGCATCTTGGGAACTTGATGTGCTTAGAAGAAGCTAAGATTTTTCTGTTCCCCGACTTAGATGACTTCAATAACCCATTTGAGGTTCTCTGCAGTATTCGCGTGGTTAAAGCTCTTGTCCTAAACGAAGAGACTACAAAGGCTTTTTTCATGGAAAGTTCGATGCCATTACGATTAGATAATATTCATGACTTGACTTTACATGTTAGAAGCGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTACTTTGAATACTCTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTATAATGAAACTGAGGAAGAGGATAATAATTATGAGGAAGAGGACAACGGAACTGAGCAGGAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAATGTACATTCTGGAGCATGCTCAGAAATTGAAGAAAATGGTGATTCTTCATTCACCGCAGCATCCGGATATTTTGGAAATGCATGTGACACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

222

Amino Acids

24.89

Weight (kDa)

4.33

Isoelectric Point (pI)

61.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 246
AccIII TCCGGA 1 cut(s) 638
AciI CCGC 1 cut(s) 630
AclWI GGATC 1 cut(s) 147
AcvI CACGTG 1 cut(s) 120
AfaI GTAC 1 cut(s) 579
AfiI CCNNNNNNNGG 2 cut(s) 226, 382
AflIII ACRYGT 1 cut(s) 346
AgeI ACCGGT 1 cut(s) 20
AgsI TTSAA 5 cut(s) 13, 76, 214, 415, 605
AluBI AGCT 3 cut(s) 106, 179, 257
AluI AGCT 3 cut(s) 106, 179, 257
Alw26I GTCTC 3 cut(s) 269, 391, 530
AlwI GGATC 1 cut(s) 147
Aor13HI TCCGGA 1 cut(s) 638
ApeKI GCWGC 1 cut(s) 632
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AsiGI ACCGGT 1 cut(s) 20
AsuHPI GGTGA 2 cut(s) 619, 626
AsuII TTCGAA 1 cut(s) 29
BbrPI CACGTG 1 cut(s) 120
BbvI GCAGC 1 cut(s) 644
BccI CCATC 1 cut(s) 545
BcoDI GTCTC 3 cut(s) 269, 391, 530
BfmI CTRYAG 2 cut(s) 235, 540
BisI GCNGC 1 cut(s) 633
BlsI GCNGC 1 cut(s) 634
BmsI GCATC 4 cut(s) 65, 157, 297, 644
BpmI CTGGAG 1 cut(s) 606
Bpu14I TTCGAA 1 cut(s) 29
BsaAI YACGTR 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 391
BsaWI WCCGGW 2 cut(s) 20, 638
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 382
Bse118I RCCGGY 1 cut(s) 20
Bse3DI GCAATG 1 cut(s) 387
BseAI TCCGGA 1 cut(s) 638
BseGI GGATG 2 cut(s) 556, 635
BseLI CCNNNNNNNGG 2 cut(s) 226, 382
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 4 cut(s) 468, 510, 552, 609
BseXI GCAGC 1 cut(s) 644
BseYI CCCAGC 1 cut(s) 376
Bsh1236I CGCG 1 cut(s) 246
BshTI ACCGGT 1 cut(s) 20
BsiSI CCGG 2 cut(s) 21, 639
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 226, 382
BsmAI GTCTC 3 cut(s) 269, 391, 530
BsmFI GGGAC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 391
Bsp119I TTCGAA 1 cut(s) 29
Bsp13I TCCGGA 1 cut(s) 638
Bsp1407I TGTACA 1 cut(s) 577
Bsp143I GATC 2 cut(s) 114, 139
BspACI CCGC 1 cut(s) 630
BspCNI CTCAG 4 cut(s) 469, 511, 553, 608
BspEI TCCGGA 1 cut(s) 638
BspFNI CGCG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 239
BspPI GGATC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 29
BspTNI GGTCTC 1 cut(s) 391
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 20
BsrGI TGTACA 1 cut(s) 577
BssAI RCCGGY 1 cut(s) 20
BssMI GATC 2 cut(s) 114, 139
Bst6I CTCTTC 4 cut(s) 267, 477, 498, 540
BstAUI TGTACA 1 cut(s) 577
BstBAI YACGTR 1 cut(s) 120
BstBI TTCGAA 1 cut(s) 29
BstC8I GCNNGC 2 cut(s) 450, 592
BstDEI CTNAG 7 cut(s) 169, 180, 202, 477, 519, 561, 595
BstF5I GGATG 2 cut(s) 556, 635
BstFNI CGCG 1 cut(s) 246
BstKTI GATC 2 cut(s) 117, 142
BstMAI GTCTC 3 cut(s) 269, 391, 530
BstMBI GATC 2 cut(s) 114, 139
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNSI RCATGY 3 cut(s) 350, 594, 660
BstSFI CTRYAG 2 cut(s) 235, 540
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 644
BtsCI GGATG 2 cut(s) 556, 635
Cac8I GCNNGC 2 cut(s) 450, 592
CciI TCATGA 1 cut(s) 331
Cfr10I RCCGGY 1 cut(s) 20
Csp6I GTAC 1 cut(s) 578
CspAI ACCGGT 1 cut(s) 20
CviAII CATG 5 cut(s) 295, 332, 347, 591, 657
CviJI RGCY 4 cut(s) 106, 179, 257, 287
CviKI_1 RGCY 4 cut(s) 106, 179, 257, 287
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 7 cut(s) 169, 180, 202, 477, 519, 561, 595
DpnI GATC 2 cut(s) 116, 141
DpnII GATC 2 cut(s) 114, 139
Eam1104I CTCTTC 4 cut(s) 267, 477, 498, 540
EarI CTCTTC 4 cut(s) 267, 477, 498, 540
Eco31I GGTCTC 1 cut(s) 391
Eco32I GATATC 1 cut(s) 38
Eco72I CACGTG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 38
EcoT22I ATGCAT 3 cut(s) 58, 428, 658
FaeI CATG 5 cut(s) 298, 335, 350, 594, 660
FaqI GGGAC 1 cut(s) 359
FatI CATG 5 cut(s) 294, 331, 346, 590, 656
Fnu4HI GCNGC 1 cut(s) 633
FokI GGATG 2 cut(s) 563, 622
Fsp4HI GCNGC 1 cut(s) 633
GluI GCNGC 1 cut(s) 633
GsaI CCCAGC 1 cut(s) 380
GsuI CTGGAG 1 cut(s) 606
HapII CCGG 2 cut(s) 21, 639
Hin1II CATG 5 cut(s) 298, 335, 350, 594, 660
HindIII AAGCTT 1 cut(s) 104
HinfI GANTC 2 cut(s) 402, 617
HpaII CCGG 2 cut(s) 21, 639
HphI GGTGA 2 cut(s) 619, 626
Hpy188I TCNGA 2 cut(s) 398, 598
Hpy188III TCNNGA 5 cut(s) 73, 137, 332, 585, 639
HpyAV CCTTC 1 cut(s) 560
HpyCH4IV ACGT 3 cut(s) 69, 119, 431
HpyCH4V TGCA 6 cut(s) 50, 56, 237, 426, 557, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 7 cut(s) 169, 180, 202, 477, 519, 561, 595
HpySE526I ACGT 3 cut(s) 69, 119, 431
Hsp92II CATG 5 cut(s) 298, 335, 350, 594, 660
Kpn2I TCCGGA 1 cut(s) 638
Kzo9I GATC 2 cut(s) 114, 139
LmnI GCTCC 1 cut(s) 587
LpnPI CCDG 7 cut(s) 34, 60, 122, 390, 509, 570, 652
Lsp1109I GCAGC 1 cut(s) 644
LweI GCATC 4 cut(s) 65, 157, 297, 644
MaeII ACGT 3 cut(s) 69, 119, 431
MaeIII GTNAC 2 cut(s) 436, 659
MalI GATC 2 cut(s) 116, 141
MboI GATC 2 cut(s) 114, 139
MboII GAAGA 9 cut(s) 25, 35, 185, 284, 494, 515, 557, 612, 617
MfeI CAATTG 1 cut(s) 453
MluCI AATT 4 cut(s) 64, 453, 493, 600
MnlI CCTC 9 cut(s) 220, 392, 451, 472, 478, 493, 499, 541, 556
Mph1103I ATGCAT 3 cut(s) 58, 428, 658
MroI TCCGGA 1 cut(s) 638
MseI TTAA 3 cut(s) 108, 252, 667
MspI CCGG 2 cut(s) 21, 639
MunI CAATTG 1 cut(s) 453
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 2 cut(s) 114, 139
NlaIII CATG 5 cut(s) 298, 335, 350, 594, 660
NmuCI GTSAC 2 cut(s) 436, 659
NsiI ATGCAT 3 cut(s) 58, 428, 658
NspI RCATGY 3 cut(s) 350, 594, 660
NspV TTCGAA 1 cut(s) 29
PaeI GCATGC 1 cut(s) 594
PagI TCATGA 1 cut(s) 331
PciI ACATGT 1 cut(s) 346
PfeI GAWTC 2 cut(s) 402, 617
PflFI GACNNNGTC 1 cut(s) 371
PinAI ACCGGT 1 cut(s) 20
PkrI GCNGC 1 cut(s) 634
PmaCI CACGTG 1 cut(s) 120
PmlI CACGTG 1 cut(s) 120
Ppu21I YACGTR 1 cut(s) 120
PscI ACATGT 1 cut(s) 346
PspCI CACGTG 1 cut(s) 120
PspFI CCCAGC 1 cut(s) 376
PstI CTGCAG 1 cut(s) 239
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
SaqAI TTAA 3 cut(s) 108, 252, 667
SatI GCNGC 1 cut(s) 633
Sau3AI GATC 2 cut(s) 114, 139
SetI ASST 7 cut(s) 72, 108, 122, 181, 231, 259, 434
SfaNI GCATC 4 cut(s) 65, 157, 297, 644
SfcI CTRYAG 2 cut(s) 235, 540
SfuI TTCGAA 1 cut(s) 29
SphI GCATGC 1 cut(s) 594
Sse9I AATT 4 cut(s) 64, 453, 493, 600
SsiI CCGC 1 cut(s) 630
SspI AATATT 2 cut(s) 91, 328
TaiI ACGT 3 cut(s) 72, 122, 434
TaqI TCGA 2 cut(s) 29, 305
TasI AATT 4 cut(s) 64, 453, 493, 600
TatI WGTACW 1 cut(s) 577
TfiI GAWTC 2 cut(s) 402, 617
Tru1I TTAA 3 cut(s) 108, 252, 667
Tru9I TTAA 3 cut(s) 108, 252, 667
TseFI GTSAC 2 cut(s) 436, 659
TseI GCWGC 1 cut(s) 632
Tsp45I GTSAC 2 cut(s) 436, 659
TspDTI ATGAA 4 cut(s) 283, 320, 486, 612
TspGWI ACGGA 1 cut(s) 528
Tth111I GACNNNGTC 1 cut(s) 371
XceI RCATGY 3 cut(s) 350, 594, 660
Zsp2I ATGCAT 3 cut(s) 58, 428, 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.