Rorug07G0214700

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002877
Physical Location & Seq
Reverse (-)
19024246 .. 19026055
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0214700.1

Sequence Viewer

Length: 381 bp
ATGACTACTGTAAGATCAAGCTTGCCGTCTAAGATTCAGCAACTTCAGTTCGCCGAAGGTGCTCTCGGGCTGTCTATCAAACTCGACTCCAAGCCGGATTATCACATAGATGCTGATTATCAAGTGGGTGATGGCTTCTCTTTCAGTGGAGGTGCCTATTCTCTTTTCCACTACCTCTTTCAGTGGAAAACACCTTTCTCTGTGGAATGGGAAGAGAACATCGATCCTGATAACATGACATATGAGCTTTGGATATTAGGAGGGTCTTTTGGTGAAGATCTGAACAACATTGAAGCTGGTTGGCAGGTTAGCCCAGACCTCTATGGTGACAGCAACACGACTGTTTTTATCGATCTCAAAGGTAATCACAAAAGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

126

Amino Acids

14.23

Weight (kDa)

4.41

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Neprosin PF03080 82 - 120 1.1e-07 Neprosin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 152
AclWI GGATC 1 cut(s) 218
AcuI CTGAAG 1 cut(s) 29
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 3 cut(s) 21, 247, 296
AluI AGCT 3 cut(s) 21, 247, 296
Alw21I GWGCWC 1 cut(s) 64
AlwI GGATC 1 cut(s) 218
Ama87I CYCGRG 1 cut(s) 65
AsuHPI GGTGA 3 cut(s) 140, 284, 338
AvaI CYCGRG 1 cut(s) 65
BanI GGYRCC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 10
BfuAI ACCTGC 1 cut(s) 295
BglII AGATCT 1 cut(s) 277
BmeT110I CYCGRG 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 100
Bsa29I ATCGAT 2 cut(s) 222, 351
BseCI ATCGAT 2 cut(s) 222, 351
BshNI GGYRCC 1 cut(s) 152
BshVI ATCGAT 2 cut(s) 222, 351
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 65
BsiSI CCGG 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 65
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 4 cut(s) 14, 223, 277, 352
BspDI ATCGAT 2 cut(s) 222, 351
BspLI GGNNCC 1 cut(s) 154
BspMI ACCTGC 1 cut(s) 295
BspPI GGATC 1 cut(s) 218
BspT107I GGYRCC 1 cut(s) 152
BssMI GATC 4 cut(s) 14, 223, 277, 352
Bst4CI ACNGT 2 cut(s) 10, 343
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 4 cut(s) 17, 226, 280, 355
BstMBI GATC 4 cut(s) 14, 223, 277, 352
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu15I ATCGAT 2 cut(s) 222, 351
BsuTUI ATCGAT 2 cut(s) 222, 351
BtsIMutI CAGTG 2 cut(s) 151, 188
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 1 cut(s) 23
ClaI ATCGAT 2 cut(s) 222, 351
CviAII CATG 1 cut(s) 235
CviJI RGCY 7 cut(s) 21, 70, 94, 135, 247, 296, 312
CviKI_1 RGCY 7 cut(s) 21, 70, 94, 135, 247, 296, 312
DdeI CTNAG 1 cut(s) 30
DpnI GATC 4 cut(s) 16, 225, 279, 354
DpnII GATC 4 cut(s) 14, 223, 277, 352
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 65
FaeI CATG 1 cut(s) 238
FaiI YATR 5 cut(s) 107, 236, 241, 243, 324
FatI CATG 1 cut(s) 234
FauNDI CATATG 1 cut(s) 241
HapII CCGG 1 cut(s) 95
Hin1II CATG 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 19
HinfI GANTC 2 cut(s) 34, 86
HpaII CCGG 1 cut(s) 95
HphI GGTGA 3 cut(s) 140, 284, 338
Hpy188I TCNGA 1 cut(s) 282
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 10, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 30
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 4 cut(s) 14, 223, 277, 352
LpnPI CCDG 5 cut(s) 108, 240, 282, 290, 327
LweI GCATC 1 cut(s) 100
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 16, 225, 279, 354
MboI GATC 4 cut(s) 14, 223, 277, 352
MboII GAAGA 2 cut(s) 224, 287
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 64
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 4 cut(s) 143, 185, 254, 329
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeI CATATG 1 cut(s) 241
NdeII GATC 4 cut(s) 14, 223, 277, 352
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 34
PleI GAGTC 1 cut(s) 80
PpsI GAGTC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 154
PsuI RGATCY 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 108
Sau3AI GATC 4 cut(s) 14, 223, 277, 352
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 1 cut(s) 64
SfaNI GCATC 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 10, 343
TaqI TCGA 3 cut(s) 84, 222, 351
TfiI GAWTC 1 cut(s) 34
TscAI CASTG 2 cut(s) 151, 188
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspRI CASTG 2 cut(s) 151, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.