Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000853.1

Orthogroup ID

OG0002877

Physical Location & Seq

Genomic Coordinates Reverse (-)

9116 .. 11123

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000853.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

atggacagattcagtgatctcccagatgaaatttctcatcatattatttcgttcctctctgactctttaaggaacctcattcaagtgggagctgtgtccaaaagatgtaggaaactttatctgtcagttccatcaataactattgatgcaagtagcgttgcagattgcaccaagttgcgagtaagattgctgaactcttgggataggtacttgtttcaccgtggtaataataagattgagcaccttagtatttactgggttttcagaacctcttgggaggcaaagataagtgatgagtatttccgagtcaccacatggatccaaaatgcagtgaggtgtaatgttgaagtacttcaccttgatctgaatcaatacgaccgcaggatgacagttgtgttgccgtcttgcatcttcctttgtcattctttgaggactctatctgtgaatttgtatatgggcaagattcagtcacccaacttgtctttttcctgtaatctccactacttgaagttgaagtatgtacgtcttaaagatgatggtattttcaaatggatctcatattcctgcaaatgcattaaggaattacatcttgaaaaagttattgggataaaagatatcaagattgagagcttgtctttggaatcgtttagtcttttgcttccttttcagaattatgagctctgggatcttagcatttcagctgaaaaacttgaagatatatgtatacactggcaatttgattcgagacgtgattcaaagtttcatcttttacctcgcatcagatcgtttaatctctttgctccaaagcttaaaaatttcaaatggagtgggaattttctgaaccatcatcatcttgggaacttgatgtgtttaaaagaagctgacatatttctgatgcccgatttagatgattctagcaacctatttgaggttctttgcagcatatgtatggttaaagttctaaccctaaatgaagaaagtacaaaggctttatgcaggggaggttccatgccggtaccattagatagtattcgttacttgagtttgcatgttacaagtctgaatgctgacttggtcgcggcaatggtgtctatttttagaggaattacttctttgaatactttgtgcataatgtctgacctatccaagtcatctgtatctggaactgaagatgacagtgatattgaggaagtggttgaggataatgatacggaggaagagaataatgaaaacgaggaagaggacaatgacaattataccgaggaagaagataatgaaactaaggaggaaaatgcaactgagaaagagaataatgaatccaggttcaatgtggaatactggaaatcccaaaacctaacctttatttatcagctcaaggaagtgagaatagaccttctagatggtaataatgaattggagttcgcaaggtatattctggagaatgctccgagtttggagaaaatggtcataattcaatcaccccagcattcggatgttgtggagatggtaaccaaaagcaagatgatttccaatgcgacagttgttttacaagaaaggcagagcagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

522

Amino Acids

60.52

Weight (kDa)

5.19

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157031 RchiOBHm_Chr5g0068981 RchiOBHm_Chr5g0069001
rosa_laevigata	RLG00000036027 RLG00000036029
rosa_multiflora	Rmu_sc0000853.1_g000002 Rmu_sc0000853.1_g000004 Rmu_sc0000936.1_g000002 Rmu_sc0006282.1_g000034 Rmu_sc0006282.1_g000035
rosa_roxburghii	Rroxscaffold_1G00011720 Rroxscaffold_1G00011740 Rroxscaffold_1G00029480 Rroxscaffold_3G00231060
rosa_rugosa	Rorug05G0395500 Rorug05G0395600 Rorug07G0214700 Rorug07G0214900
rosa_samantha	Rh2BG537000 Rh2BG537100 Rh2BG537200 Rh2DG545800 Rh2DG545900 Rh2DG546000 Rh5AG452100 Rh5AG452300 Rh5BG471100 Rh5BG471300 Rh5CG493500 Rh5CG493800 Rh5DG483800 Rh5DG484000 Rh7BG348100 Rh7BG348200 Rh7BG348400
rosa_wichuraiana	Rw0G006120 Rw0G006140 Rw2G043220 Rw5G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1015
AccB1I	GGYRCC	1 cut(s)	1015
AccI	GTMKAC	1 cut(s)	724
AccII	CGCG	1 cut(s)	1079
AciI	CCGC	2 cut(s)	379, 1079
AclWI	GGATC	4 cut(s)	313, 326, 560, 693
AcsI	RAATTY	4 cut(s)	30, 445, 814, 832
AcuI	CTGAAG	1 cut(s)	1188
AfaI	GTAC	5 cut(s)	209, 351, 522, 982, 1017
AfiI	CCNNNNNNNGG	2 cut(s)	928, 1489
AjiI	CACGTC	1 cut(s)	749
AjnI	CCWGG	1 cut(s)	1319
AjuI	GAANNNNNNNTTGG	4 cut(s)	585, 617, 1055, 1087
AluBI	AGCT	7 cut(s)	92, 630, 679, 701, 808, 881, 1372
AluI	AGCT	7 cut(s)	92, 630, 679, 701, 808, 881, 1372
Alw21I	GWGCWC	2 cut(s)	243, 681
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	4 cut(s)	313, 326, 560, 693
ApeKI	GCWGC	1 cut(s)	939
ApoI	RAATTY	4 cut(s)	30, 445, 814, 832
Asp700I	GAANNNNTTC	2 cut(s)	351, 1108
Asp718I	GGTACC	1 cut(s)	1015
AsuHPI	GGTGA	5 cut(s)	209, 301, 347, 462, 1470
BamHI	GGATCC	1 cut(s)	318
BanI	GGYRCC	1 cut(s)	1015
BanII	GRGCYC	1 cut(s)	681
Bbv12I	GWGCWC	2 cut(s)	243, 681
BbvI	GCAGC	1 cut(s)	951
BccI	CCATC	5 cut(s)	139, 530, 852, 1394, 1498
BceAI	ACGGC	1 cut(s)	385
BciT130I	CCWGG	1 cut(s)	1321
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	2 cut(s)	915, 1397
BisI	GCNGC	2 cut(s)	940, 1080
BlsI	GCNGC	2 cut(s)	941, 1081
BmcAI	AGTACT	1 cut(s)	351
Bme1390I	CCNGG	1 cut(s)	1321
BmgBI	CACGTC	1 cut(s)	749
BmiI	GGNNCC	4 cut(s)	74, 320, 1006, 1017
BmrFI	CCNGG	1 cut(s)	1321
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	4 cut(s)	136, 417, 786, 885
BmuI	ACTGGG	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	1457
BpuEI	CTTGAG	2 cut(s)	1060, 1358
BsaBI	GATNNNNATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	220, 1260
Bsc4I	CCNNNNNNNGG	2 cut(s)	928, 1489
Bse118I	RCCGGY	1 cut(s)	1012
Bse1I	ACTGG	3 cut(s)	260, 734, 1343
Bse3DI	GCAATG	1 cut(s)	1089
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	1321
BseDI	CCNNGG	2 cut(s)	220, 1260
BseGI	GGATG	2 cut(s)	390, 1498
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	2 cut(s)	928, 1489
BseMI	GCAATG	1 cut(s)	1089
BseMII	CTCAG	1 cut(s)	1290
BseNI	ACTGG	3 cut(s)	260, 734, 1343
BseXI	GCAGC	1 cut(s)	951
BseYI	CCCAGC	1 cut(s)	1482
Bsh1236I	CGCG	1 cut(s)	1079
Bsh1285I	CGRYCG	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	1015
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	2 cut(s)	243, 681
BsiSI	CCGG	1 cut(s)	1013
BslI	CCNNNNNNNGG	2 cut(s)	928, 1489
BsmAI	GTCTC	1 cut(s)	739
BsmBI	CGTCTC	1 cut(s)	739
BsmI	GAATGC	3 cut(s)	1069, 1447, 1486
Bsp1286I	GDGCHC	2 cut(s)	243, 681
Bsp143I	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
BspACI	CCGC	2 cut(s)	379, 1079
BspCNI	CTCAG	1 cut(s)	1291
BspFNI	CGCG	1 cut(s)	1079
BspLI	GGNNCC	4 cut(s)	74, 320, 1006, 1017
BspPI	GGATC	4 cut(s)	313, 326, 560, 693
BspT107I	GGYRCC	1 cut(s)	1015
BsrDI	GCAATG	1 cut(s)	1089
BsrFI	RCCGGY	1 cut(s)	1012
BsrI	ACTGG	3 cut(s)	260, 734, 1343
BssAI	RCCGGY	1 cut(s)	1012
BssECI	CCNNGG	2 cut(s)	220, 1260
BssMI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
BssNAI	GTATAC	1 cut(s)	725
Bst1107I	GTATAC	1 cut(s)	725
Bst2UI	CCWGG	1 cut(s)	1321
Bst4CI	ACNGT	4 cut(s)	221, 391, 1178, 1540
Bst6I	CTCTTC	2 cut(s)	1212, 1233
BstDEI	CTNAG	4 cut(s)	245, 689, 1281, 1299
BstDSI	CCRYGG	1 cut(s)	220
BstEII	GGTNACC	1 cut(s)	1507
BstENI	CCTNNNNNAGG	1 cut(s)	926
BstF5I	GGATG	2 cut(s)	390, 1498
BstFNI	CGCG	1 cut(s)	1079
BstKTI	GATC	6 cut(s)	19, 321, 364, 555, 688, 785
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
BstMCI	CGRYCG	1 cut(s)	379
BstNI	CCWGG	1 cut(s)	1321
BstNSI	RCATGY	1 cut(s)	1052
BstPI	GGTNACC	1 cut(s)	1507
BstSCI	CCNGG	1 cut(s)	1319
BstUI	CGCG	1 cut(s)	1079
BstV1I	GCAGC	1 cut(s)	951
BstX2I	RGATCY	3 cut(s)	318, 552, 685
BstYI	RGATCY	3 cut(s)	318, 552, 685
BstZ17I	GTATAC	1 cut(s)	725
BtgI	CCRYGG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	749
BtsCI	GGATG	2 cut(s)	390, 1498
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	4 cut(s)	19, 336, 727, 1183
Cfr10I	RCCGGY	1 cut(s)	1012
Csp6I	GTAC	5 cut(s)	208, 350, 521, 981, 1016
CspCI	CAANNNNNGTGG	2 cut(s)	808, 843
CviAII	CATG	3 cut(s)	315, 1009, 1049
CviJI	RGCY	8 cut(s)	92, 630, 679, 701, 808, 881, 989, 1372
CviKI_1	RGCY	8 cut(s)	92, 630, 679, 701, 808, 881, 989, 1372
CviQI	GTAC	5 cut(s)	208, 350, 521, 981, 1016
DdeI	CTNAG	4 cut(s)	245, 689, 1281, 1299
DpnI	GATC	6 cut(s)	18, 320, 363, 554, 687, 784
DpnII	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
DraI	TTTAAA	1 cut(s)	873
Eam1104I	CTCTTC	2 cut(s)	1212, 1233
EarI	CTCTTC	2 cut(s)	1212, 1233
Ecl136II	GAGCTC	1 cut(s)	679
Eco24I	GRGCYC	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	679
Eco57I	CTGAAG	1 cut(s)	1188
Eco91I	GGTNACC	1 cut(s)	1507
EcoICRI	GAGCTC	1 cut(s)	679
EcoNI	CCTNNNNNAGG	1 cut(s)	926
EcoO65I	GGTNACC	1 cut(s)	1507
EcoRII	CCWGG	1 cut(s)	1319
EcoRV	GATATC	1 cut(s)	616
EcoT22I	ATGCAT	1 cut(s)	575
EcoT38I	GRGCYC	1 cut(s)	681
Esp3I	CGTCTC	1 cut(s)	739
FaeI	CATG	3 cut(s)	318, 1012, 1052
FatI	CATG	3 cut(s)	314, 1008, 1048
FauNDI	CATATG	1 cut(s)	944
FblI	GTMKAC	1 cut(s)	724
Fnu4HI	GCNGC	2 cut(s)	940, 1080
FokI	GGATG	2 cut(s)	397, 1505
FriOI	GRGCYC	1 cut(s)	681
Fsp4HI	GCNGC	2 cut(s)	940, 1080
FspBI	CTAG	2 cut(s)	915, 1397
GluI	GCNGC	2 cut(s)	940, 1080
GsaI	CCCAGC	1 cut(s)	1486
GsuI	CTGGAG	1 cut(s)	1457
HapII	CCGG	1 cut(s)	1013
Hin1II	CATG	3 cut(s)	318, 1012, 1052
HindIII	AAGCTT	1 cut(s)	806
HpaII	CCGG	1 cut(s)	1013
HphI	GGTGA	5 cut(s)	209, 301, 347, 462, 1470
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188III	TCNNGA	6 cut(s)	590, 619, 744, 1161, 1397, 1436
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	1 cut(s)	1403
HpyCH4III	ACNGT	4 cut(s)	221, 391, 1178, 1540
HpyCH4IV	ACGT	2 cut(s)	523, 748
HpyF3I	CTNAG	4 cut(s)	245, 689, 1281, 1299
HpySE526I	ACGT	2 cut(s)	523, 748
Hsp92II	CATG	3 cut(s)	318, 1012, 1052
KpnI	GGTACC	1 cut(s)	1019
Kzo9I	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
LmnI	GCTCC	3 cut(s)	89, 805, 1450
Lsp1109I	GCAGC	1 cut(s)	951
LweI	GCATC	4 cut(s)	136, 417, 786, 885
MaeI	CTAG	2 cut(s)	915, 1397
MaeII	ACGT	2 cut(s)	523, 748
MaeIII	GTNAC	5 cut(s)	307, 468, 1034, 1051, 1507
MalI	GATC	6 cut(s)	18, 320, 363, 554, 687, 784
MboI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
MboII	GAAGA	8 cut(s)	403, 725, 986, 1181, 1229, 1250, 1277, 1280
MflI	RGATCY	3 cut(s)	318, 552, 685
MhlI	GDGCHC	2 cut(s)	243, 681
MlyI	GAGTC	3 cut(s)	56, 315, 427
Mph1103I	ATGCAT	1 cut(s)	575
MroXI	GAANNNNTTC	2 cut(s)	351, 1108
MseI	TTAA	7 cut(s)	68, 528, 576, 789, 810, 872, 954
MslI	CAYNNNNRTG	3 cut(s)	83, 947, 1491
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	1 cut(s)	1013
MspR9I	CCNGG	1 cut(s)	1321
Mva1269I	GAATGC	3 cut(s)	1069, 1447, 1486
MvaI	CCWGG	1 cut(s)	1321
MvnI	CGCG	1 cut(s)	1079
NdeI	CATATG	1 cut(s)	944
NdeII	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
NlaIII	CATG	3 cut(s)	318, 1012, 1052
NlaIV	GGNNCC	4 cut(s)	74, 320, 1006, 1017
NmuCI	GTSAC	2 cut(s)	307, 468
NsiI	ATGCAT	1 cut(s)	575
NspI	RCATGY	1 cut(s)	1052
PctI	GAATGC	3 cut(s)	1069, 1447, 1486
PdmI	GAANNNNTTC	2 cut(s)	351, 1108
PfeI	GAWTC	8 cut(s)	9, 367, 463, 641, 740, 752, 911, 1316
PflFI	GACNNNGTC	1 cut(s)	1073
PkrI	GCNGC	2 cut(s)	941, 1081
PleI	GAGTC	3 cut(s)	56, 314, 427
PpsI	GAGTC	3 cut(s)	56, 314, 427
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	1 cut(s)	1319
PspEI	GGTNACC	1 cut(s)	1507
PspFI	CCCAGC	1 cut(s)	1482
PspGI	CCWGG	1 cut(s)	1319
PspN4I	GGNNCC	4 cut(s)	74, 320, 1006, 1017
PsuI	RGATCY	3 cut(s)	318, 552, 685
PsyI	GACNNNGTC	1 cut(s)	1073
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	5 cut(s)	209, 351, 522, 982, 1017
RsaNI	GTAC	5 cut(s)	208, 350, 521, 981, 1016
RseI	CAYNNNNRTG	3 cut(s)	83, 947, 1491
SacI	GAGCTC	1 cut(s)	681
SaqAI	TTAA	7 cut(s)	68, 528, 576, 789, 810, 872, 954
SatI	GCNGC	2 cut(s)	940, 1080
Sau3AI	GATC	6 cut(s)	16, 318, 361, 552, 685, 782
ScaI	AGTACT	1 cut(s)	351
SchI	GAGTC	3 cut(s)	56, 315, 427
ScrFI	CCNGG	1 cut(s)	1321
SduI	GDGCHC	2 cut(s)	243, 681
SfaNI	GCATC	4 cut(s)	136, 417, 786, 885
SmiMI	CAYNNNNRTG	3 cut(s)	83, 947, 1491
SmlI	CTYRAG	2 cut(s)	1039, 1373
SmoI	CTYRAG	2 cut(s)	1039, 1373
SsiI	CCGC	2 cut(s)	379, 1079
SspMI	CTAG	2 cut(s)	915, 1397
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	1319
TaaI	ACNGT	4 cut(s)	221, 391, 1178, 1540
TaiI	ACGT	2 cut(s)	526, 751
TaqI	TCGA	1 cut(s)	743
TatI	WGTACW	2 cut(s)	349, 980
TauI	GCSGC	1 cut(s)	1082
TfiI	GAWTC	8 cut(s)	9, 367, 463, 641, 740, 752, 911, 1316
Tru1I	TTAA	7 cut(s)	68, 528, 576, 789, 810, 872, 954
Tru9I	TTAA	7 cut(s)	68, 528, 576, 789, 810, 872, 954
TscAI	CASTG	4 cut(s)	19, 336, 734, 1183
TseFI	GTSAC	2 cut(s)	307, 468
TseI	GCWGC	1 cut(s)	939
Tsp45I	GTSAC	2 cut(s)	307, 468
TspDTI	ATGAA	7 cut(s)	42, 752, 987, 1242, 1290, 1329, 1425
TspGWI	ACGGA	1 cut(s)	1226
TspRI	CASTG	4 cut(s)	19, 336, 734, 1183
Tth111I	GACNNNGTC	1 cut(s)	1073
XagI	CCTNNNNNAGG	1 cut(s)	926
XapI	RAATTY	4 cut(s)	30, 445, 814, 832
XbaI	TCTAGA	1 cut(s)	1396
XceI	RCATGY	1 cut(s)	1052
XcmI	CCANNNNNNNNNTGG	2 cut(s)	851, 1327
XmiI	GTMKAC	1 cut(s)	724
XmnI	GAANNNNTTC	2 cut(s)	351, 1108
XspI	CTAG	2 cut(s)	915, 1397
ZrmI	AGTACT	1 cut(s)	351
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.