Rh2BG537000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002877
Physical Location & Seq
Forward (+)
74563336 .. 74566745
3410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG537000.1

Sequence Viewer

Length: 1110 bp
ATGACAAGTTGTCAAGTTCAAGGAGCTTCTAGTGAGAGTATAATGATGGACAGATTCAGTGATCTCCCAGATGAAATTTCTCATCATATTATTTCGTTCCTCTCTGACTCTTTAAGGAACCTCATTCAAGTGGGAGCTGTGTCCAAAAGATGTAGGAAACTTTATCTGTCAGTTCCATCAATAATTATTGATGCAAGTAGCGTTGCAGATTGCACCAAGTTGCGAGTAAGATTGTTGAACTCTTGGGATAGGTACTTGTTTCACCGTGGTAATAATAAGATTGAGCGCCTTAGTATTTACTGGGTTTTCAGAACCTCTTGGGAGGCAAAGATAAGTGATGAGTATTTCCGAGTCACCACATGGATCCAAAATGCAGTGAGGTGTAATGTTGAAGTACTTCACCTTGATCTGAATCAATACGACCTCAGGATGACAGTTGTGTTGCCGTCTTGCATCTTCCTTTGTCGTTCTTTGAGGACTCTATCTGTGAATTTGTATATGGGCAAGATTCAGTCACCCAACTTGTCTTTTTCCTGTAATCTCCACTACTTGAAGTTGAAGTATGTACGTCTTAAAGATGACTGTATTTTCAAATGGATCTCATATTCCTGCAAATGCATAAAGGAATTACATCTTGAAAAAGTTATTGGGATAAAAGATATCAAGATTGAGAGCTCGTCTTTGGAATCGTTTAGTCTTTTGCTTCCTTTTCAGAATTATGAGCTCTGGGATCTTAGCATTTCAGCTGAAAAACTTGAAGATATATGTATACACTGGCAATTTGATTCGAGACGTGATTCAAAGTTTCATCTTTTACCTCGCATCAGATCATTTAATCTCTTTGCTCCAAAGCTTAAAAATTTCAAATGGAGTGGGAATTTTCTGAACCATCATCATCTTGGGAACTTGATGTGTTTAGAAGAAGCTGACATATTTCTGATGCCCGATTTAGATGATTCTAGCAACCTATTTGAGGTTCTTTGCAGCATATGTATGGTTAAAGTTCTAACCCTAAATGAAGAAACTACAGAGGTAAGAACAAATGCCCTTCAGACTATGAAATCTTTTTATGTGGCTATATGGCATGTCACTGCGAATACAATATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

369

Amino Acids

43.17

Weight (kDa)

8.14

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 119 - 264 1.3e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 769
AclWI GGATC 4 cut(s) 358, 371, 605, 738
AcsI RAATTY 4 cut(s) 75, 490, 859, 877
AcuI CTGAAG 1 cut(s) 1034
AfaI GTAC 3 cut(s) 254, 396, 567
AfiI CCNNNNNNNGG 1 cut(s) 973
AhdI GACNNNNNGTC 1 cut(s) 9
AjiI CACGTC 1 cut(s) 794
AjuI GAANNNNNNNTTGG 2 cut(s) 630, 662
AluBI AGCT 7 cut(s) 26, 137, 675, 724, 746, 853, 926
AluI AGCT 7 cut(s) 26, 137, 675, 724, 746, 853, 926
Alw21I GWGCWC 2 cut(s) 677, 726
Alw26I GTCTC 1 cut(s) 784
AlwI GGATC 4 cut(s) 358, 371, 605, 738
ApeKI GCWGC 1 cut(s) 984
ApoI RAATTY 4 cut(s) 75, 490, 859, 877
Asp700I GAANNNNTTC 1 cut(s) 396
AspLEI GCGC 1 cut(s) 288
AsuHPI GGTGA 4 cut(s) 254, 346, 392, 507
AxyI CCTNAGG 1 cut(s) 425
BamHI GGATCC 1 cut(s) 363
BanII GRGCYC 2 cut(s) 677, 726
Bbv12I GWGCWC 2 cut(s) 677, 726
BbvI GCAGC 1 cut(s) 996
BccI CCATC 3 cut(s) 40, 184, 897
BceAI ACGGC 1 cut(s) 430
BcoDI GTCTC 1 cut(s) 784
BfaI CTAG 2 cut(s) 30, 960
BfmI CTRYAG 1 cut(s) 1026
BfoI RGCGCY 1 cut(s) 289
BisI GCNGC 1 cut(s) 985
BlsI GCNGC 1 cut(s) 986
BmcAI AGTACT 1 cut(s) 396
BmeRI GACNNNNNGTC 1 cut(s) 9
BmgBI CACGTC 1 cut(s) 794
BmiI GGNNCC 2 cut(s) 119, 365
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 4 cut(s) 181, 462, 831, 930
BmuI ACTGGG 1 cut(s) 310
BsaBI GATNNNNATC 1 cut(s) 411
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 973
Bse1I ACTGG 2 cut(s) 305, 779
Bse21I CCTNAGG 1 cut(s) 425
Bse8I GATNNNNATC 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 435
BseJI GATNNNNATC 1 cut(s) 411
BseLI CCNNNNNNNGG 1 cut(s) 973
BseMII CTCAG 1 cut(s) 439
BseNI ACTGG 2 cut(s) 305, 779
BseXI GCAGC 1 cut(s) 996
BsiHKAI GWGCWC 2 cut(s) 677, 726
BslI CCNNNNNNNGG 1 cut(s) 973
BsmAI GTCTC 1 cut(s) 784
BsmBI CGTCTC 1 cut(s) 784
Bsp1286I GDGCHC 2 cut(s) 677, 726
Bsp143I GATC 6 cut(s) 61, 363, 406, 597, 730, 827
BspCNI CTCAG 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 119, 365
BspPI GGATC 4 cut(s) 358, 371, 605, 738
BsrI ACTGG 2 cut(s) 305, 779
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 6 cut(s) 61, 363, 406, 597, 730, 827
BssNAI GTATAC 1 cut(s) 770
Bst1107I GTATAC 1 cut(s) 770
Bst4CI ACNGT 3 cut(s) 266, 436, 584
BstDEI CTNAG 3 cut(s) 290, 425, 734
BstDSI CCRYGG 1 cut(s) 265
BstENI CCTNNNNNAGG 1 cut(s) 971
BstF5I GGATG 1 cut(s) 435
BstH2I RGCGCY 1 cut(s) 289
BstHHI GCGC 1 cut(s) 288
BstKTI GATC 6 cut(s) 64, 366, 409, 600, 733, 830
BstMAI GTCTC 1 cut(s) 784
BstMBI GATC 6 cut(s) 61, 363, 406, 597, 730, 827
BstNSI RCATGY 1 cut(s) 1088
BstSFI CTRYAG 1 cut(s) 1026
BstV1I GCAGC 1 cut(s) 996
BstX2I RGATCY 3 cut(s) 363, 597, 730
BstYI RGATCY 3 cut(s) 363, 597, 730
BstZ17I GTATAC 1 cut(s) 770
Bsu36I CCTNAGG 1 cut(s) 425
BtgI CCRYGG 1 cut(s) 265
BtrI CACGTC 1 cut(s) 794
BtsCI GGATG 1 cut(s) 435
BtsI GCAGTG 2 cut(s) 381, 1089
BtsIMutI CAGTG 4 cut(s) 64, 381, 772, 1089
CfoI GCGC 1 cut(s) 288
Csp6I GTAC 3 cut(s) 253, 395, 566
CspCI CAANNNNNGTGG 2 cut(s) 853, 888
CviAII CATG 2 cut(s) 360, 1085
CviJI RGCY 8 cut(s) 26, 137, 675, 724, 746, 853, 926, 1076
CviKI_1 RGCY 8 cut(s) 26, 137, 675, 724, 746, 853, 926, 1076
CviQI GTAC 3 cut(s) 253, 395, 566
DdeI CTNAG 3 cut(s) 290, 425, 734
DpnI GATC 6 cut(s) 63, 365, 408, 599, 732, 829
DpnII GATC 6 cut(s) 61, 363, 406, 597, 730, 827
DriI GACNNNNNGTC 1 cut(s) 9
Eam1105I GACNNNNNGTC 1 cut(s) 9
Ecl136II GAGCTC 2 cut(s) 675, 724
Eco24I GRGCYC 2 cut(s) 677, 726
Eco32I GATATC 1 cut(s) 661
Eco53kI GAGCTC 2 cut(s) 675, 724
Eco57I CTGAAG 1 cut(s) 1034
Eco81I CCTNAGG 1 cut(s) 425
EcoICRI GAGCTC 2 cut(s) 675, 724
EcoNI CCTNNNNNAGG 1 cut(s) 971
EcoRV GATATC 1 cut(s) 661
EcoT22I ATGCAT 1 cut(s) 620
EcoT38I GRGCYC 2 cut(s) 677, 726
Esp3I CGTCTC 1 cut(s) 784
FaeI CATG 2 cut(s) 363, 1088
FatI CATG 2 cut(s) 359, 1084
FauNDI CATATG 1 cut(s) 989
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 1 cut(s) 985
FokI GGATG 1 cut(s) 442
FriOI GRGCYC 2 cut(s) 677, 726
Fsp4HI GCNGC 1 cut(s) 985
FspBI CTAG 2 cut(s) 30, 960
GlaI GCGC 1 cut(s) 287
GluI GCNGC 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 289
HhaI GCGC 1 cut(s) 288
Hin1II CATG 2 cut(s) 363, 1088
Hin6I GCGC 1 cut(s) 286
HinP1I GCGC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 851
HphI GGTGA 4 cut(s) 254, 346, 392, 507
Hpy166II GTNNAC 1 cut(s) 770
Hpy188I TCNGA 9 cut(s) 106, 311, 350, 411, 714, 827, 885, 939, 1053
Hpy188III TCNNGA 4 cut(s) 427, 635, 664, 789
Hpy8I GTNNAC 1 cut(s) 770
HpyAV CCTTC 1 cut(s) 1058
HpyCH4III ACNGT 3 cut(s) 266, 436, 584
HpyCH4IV ACGT 2 cut(s) 568, 793
HpyCH4V TGCA 8 cut(s) 194, 206, 213, 374, 453, 612, 618, 984
HpyF3I CTNAG 3 cut(s) 290, 425, 734
HpySE526I ACGT 2 cut(s) 568, 793
Hsp92II CATG 2 cut(s) 363, 1088
HspAI GCGC 1 cut(s) 286
Kzo9I GATC 6 cut(s) 61, 363, 406, 597, 730, 827
LmnI GCTCC 3 cut(s) 23, 134, 850
LpnPI CCDG 7 cut(s) 81, 286, 412, 547, 622, 712, 760
Lsp1109I GCAGC 1 cut(s) 996
LweI GCATC 4 cut(s) 181, 462, 831, 930
MaeI CTAG 2 cut(s) 30, 960
MaeII ACGT 2 cut(s) 568, 793
MaeIII GTNAC 3 cut(s) 352, 513, 1087
MalI GATC 6 cut(s) 63, 365, 408, 599, 732, 829
MboI GATC 6 cut(s) 61, 363, 406, 597, 730, 827
MboII GAAGA 4 cut(s) 448, 770, 932, 1031
MflI RGATCY 3 cut(s) 363, 597, 730
MhlI GDGCHC 2 cut(s) 677, 726
MluCI AATT 8 cut(s) 75, 183, 490, 626, 715, 779, 859, 877
MlyI GAGTC 3 cut(s) 101, 360, 472
Mph1103I ATGCAT 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 5 cut(s) 113, 573, 834, 855, 999
MslI CAYNNNNRTG 2 cut(s) 128, 992
MspA1I CMGCKG 1 cut(s) 746
NdeI CATATG 1 cut(s) 989
NdeII GATC 6 cut(s) 61, 363, 406, 597, 730, 827
NlaIII CATG 2 cut(s) 363, 1088
NlaIV GGNNCC 2 cut(s) 119, 365
NmuCI GTSAC 3 cut(s) 352, 513, 1087
NsiI ATGCAT 1 cut(s) 620
NspI RCATGY 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 7 cut(s) 54, 412, 508, 686, 785, 797, 956
PkrI GCNGC 1 cut(s) 986
PleI GAGTC 3 cut(s) 101, 359, 472
PpsI GAGTC 3 cut(s) 101, 359, 472
Psp124BI GAGCTC 2 cut(s) 677, 726
PspN4I GGNNCC 2 cut(s) 119, 365
PsuI RGATCY 3 cut(s) 363, 597, 730
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 3 cut(s) 254, 396, 567
RsaNI GTAC 3 cut(s) 253, 395, 566
RseI CAYNNNNRTG 2 cut(s) 128, 992
SacI GAGCTC 2 cut(s) 677, 726
SaqAI TTAA 5 cut(s) 113, 573, 834, 855, 999
SatI GCNGC 1 cut(s) 985
Sau3AI GATC 6 cut(s) 61, 363, 406, 597, 730, 827
ScaI AGTACT 1 cut(s) 396
SchI GAGTC 3 cut(s) 101, 360, 472
SduI GDGCHC 2 cut(s) 677, 726
SfaNI GCATC 4 cut(s) 181, 462, 831, 930
SfcI CTRYAG 1 cut(s) 1026
SmiMI CAYNNNNRTG 2 cut(s) 128, 992
Sse9I AATT 8 cut(s) 75, 183, 490, 626, 715, 779, 859, 877
SspMI CTAG 2 cut(s) 30, 960
SstI GAGCTC 2 cut(s) 677, 726
TaaI ACNGT 3 cut(s) 266, 436, 584
TaiI ACGT 2 cut(s) 571, 796
TaqI TCGA 1 cut(s) 788
TasI AATT 8 cut(s) 75, 183, 490, 626, 715, 779, 859, 877
TatI WGTACW 1 cut(s) 394
TfiI GAWTC 7 cut(s) 54, 412, 508, 686, 785, 797, 956
Tru1I TTAA 5 cut(s) 113, 573, 834, 855, 999
Tru9I TTAA 5 cut(s) 113, 573, 834, 855, 999
TscAI CASTG 4 cut(s) 64, 381, 779, 1096
TseFI GTSAC 3 cut(s) 352, 513, 1087
TseI GCWGC 1 cut(s) 984
Tsp45I GTSAC 3 cut(s) 352, 513, 1087
TspDTI ATGAA 4 cut(s) 87, 797, 1032, 1073
TspRI CASTG 4 cut(s) 64, 381, 779, 1096
XagI CCTNNNNNAGG 1 cut(s) 971
XapI RAATTY 4 cut(s) 75, 490, 859, 877
XceI RCATGY 1 cut(s) 1088
XcmI CCANNNNNNNNNTGG 1 cut(s) 896
XmiI GTMKAC 1 cut(s) 769
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 2 cut(s) 30, 960
ZrmI AGTACT 1 cut(s) 396
Zsp2I ATGCAT 1 cut(s) 620
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.