Rh7BG348400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002877
Physical Location & Seq
Reverse (-)
36328467 .. 36330017
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG348400.1

Sequence Viewer

Length: 1113 bp
ATGGGCAAGATTCAGTCACCCAACTTGTCTTTTTCCTGTAATCTCCACTACTTGAAGTTGAAGTATGTACGTCTTAAAGATGACGGTATTTTCAAATGGATCTCATATTCCTGCAAATGCATAAAGGAATTACATCTTGAAAAAGTTATTGGGATAAAAGATATCAAGATTGAGAGCTCGTCTTTGGAATCGTTTAGTCTTTTGCTTCCTTTTCAGAATTATGAGCTCTGGGATCTTAGCATTTCAGCTGAAAAACTTGAAGATATATGTATACACTGGCAATTTGATTCGAGACGTGATTCAAAGTTTCATCTTTTACCTCGCATCAGATCATTTAATCTCTTTGCTCCAAAGCTTAAAAATTTCAAATGGAGTGGGAATTTTCTGAACCATCATCATCTTGGGAACTTGATGTGTTTAGAAGAAGCTGACATATTTCTGATGCCCGATTTAGATGATTCTAGCAACCTATTTGAGGTTCTTTGCAGCATATGTATGGTTAAAGTTCTAACCCTAAATGAAGAAACTACAAAGGCTTTATGCAGGGGAGGTTCCATGCCGGTACCATTAGATAGTATTCGTTACTTGAGTTTGCATGTTACAAGTCTGAATGCTGACTTGGTCGCGGCAATGGTGTCTATATTTAGAGGAATTACTTCTTTGAATACTTTGTGCATAATGTCTGACCTATCCAAGTCATCTGTATCTGGAACTGAAGATGACAGTGATATTGAGGAAGTGGTTGAGGATAATGATACGGAGGAAGAGAATAATGAAAACGAGGAAGAGGACAATGACAATTATACCGAGGAAGAAGATAATGAAACTGAGGAAAATGCAACTGAGAAAGAGAATAATGAATCCAGGTTCAATGTGGAATACTGGAAATCCCAAAACCTAACCTTTATTTATCAGCTCAAGGAAGTGAGAATAGACCTTCTAGATGGTAATAATGAATTGGAGTTCGCAAGGTATATTCTGGAGAATGCTCCGAGTTTGGAGAAAATGGTCATAATTCAATCACCCCAGCATTCGGATGTTGTGGAGATGGTAACCAAAAGCAAGATGATTTCCAATGCGACAGTTGTTTTACAAGAAAGGCAGAGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD

Protein Analysis

370

Amino Acids

42.62

Weight (kDa)

4.65

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 317 - 338 7.8e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 562
AccB1I GGYRCC 1 cut(s) 562
AccI GTMKAC 1 cut(s) 271
AccII CGCG 1 cut(s) 626
AciI CCGC 1 cut(s) 626
AclWI GGATC 2 cut(s) 107, 240
AcsI RAATTY 2 cut(s) 361, 379
AcuI CTGAAG 1 cut(s) 735
AfaI GTAC 2 cut(s) 69, 564
AfiI CCNNNNNNNGG 2 cut(s) 475, 1033
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 863
AjuI GAANNNNNNNTTGG 4 cut(s) 132, 164, 602, 634
AluBI AGCT 6 cut(s) 177, 226, 248, 355, 428, 916
AluI AGCT 6 cut(s) 177, 226, 248, 355, 428, 916
Alw21I GWGCWC 2 cut(s) 179, 228
Alw26I GTCTC 1 cut(s) 286
AlwI GGATC 2 cut(s) 107, 240
ApeKI GCWGC 1 cut(s) 486
ApoI RAATTY 2 cut(s) 361, 379
Asp700I GAANNNNTTC 1 cut(s) 655
Asp718I GGTACC 1 cut(s) 562
AsuHPI GGTGA 2 cut(s) 9, 1014
BanI GGYRCC 1 cut(s) 562
BanII GRGCYC 2 cut(s) 179, 228
Bbv12I GWGCWC 2 cut(s) 179, 228
BbvI GCAGC 1 cut(s) 498
BccI CCATC 3 cut(s) 399, 938, 1042
BciT130I CCWGG 1 cut(s) 865
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 2 cut(s) 462, 941
BisI GCNGC 2 cut(s) 487, 627
BlsI GCNGC 2 cut(s) 488, 628
Bme1390I CCNGG 1 cut(s) 865
BmgBI CACGTC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 553, 564
BmrFI CCNGG 1 cut(s) 865
BmsI GCATC 2 cut(s) 333, 432
BpmI CTGGAG 1 cut(s) 1001
BpuEI CTTGAG 2 cut(s) 607, 902
BsaJI CCNNGG 1 cut(s) 807
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 1033
Bse118I RCCGGY 1 cut(s) 559
Bse1I ACTGG 2 cut(s) 281, 887
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 1 cut(s) 865
BseDI CCNNGG 1 cut(s) 807
BseGI GGATG 1 cut(s) 1042
BseLI CCNNNNNNNGG 2 cut(s) 475, 1033
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 2 cut(s) 819, 834
BseNI ACTGG 2 cut(s) 281, 887
BseXI GCAGC 1 cut(s) 498
BseYI CCCAGC 1 cut(s) 1026
Bsh1236I CGCG 1 cut(s) 626
BshNI GGYRCC 1 cut(s) 562
BsiHKAI GWGCWC 2 cut(s) 179, 228
BsiSI CCGG 1 cut(s) 560
BslI CCNNNNNNNGG 2 cut(s) 475, 1033
BsmAI GTCTC 1 cut(s) 286
BsmBI CGTCTC 1 cut(s) 286
BsmI GAATGC 3 cut(s) 616, 991, 1030
Bsp1286I GDGCHC 2 cut(s) 179, 228
Bsp143I GATC 3 cut(s) 99, 232, 329
BspACI CCGC 1 cut(s) 626
BspCNI CTCAG 2 cut(s) 820, 835
BspFNI CGCG 1 cut(s) 626
BspLI GGNNCC 2 cut(s) 553, 564
BspPI GGATC 2 cut(s) 107, 240
BspT107I GGYRCC 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 1 cut(s) 559
BsrI ACTGG 2 cut(s) 281, 887
BssAI RCCGGY 1 cut(s) 559
BssECI CCNNGG 1 cut(s) 807
BssMI GATC 3 cut(s) 99, 232, 329
BssNAI GTATAC 1 cut(s) 272
Bst1107I GTATAC 1 cut(s) 272
Bst2UI CCWGG 1 cut(s) 865
Bst4CI ACNGT 3 cut(s) 86, 725, 1084
Bst6I CTCTTC 2 cut(s) 759, 780
BstDEI CTNAG 3 cut(s) 236, 828, 843
BstEII GGTNACC 1 cut(s) 1051
BstENI CCTNNNNNAGG 1 cut(s) 473
BstF5I GGATG 1 cut(s) 1042
BstFNI CGCG 1 cut(s) 626
BstKTI GATC 3 cut(s) 102, 235, 332
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 3 cut(s) 99, 232, 329
BstNI CCWGG 1 cut(s) 865
BstNSI RCATGY 1 cut(s) 599
BstPI GGTNACC 1 cut(s) 1051
BstSCI CCNGG 1 cut(s) 863
BstUI CGCG 1 cut(s) 626
BstV1I GCAGC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 99, 232
BstYI RGATCY 2 cut(s) 99, 232
BstZ17I GTATAC 1 cut(s) 272
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 1042
BtsIMutI CAGTG 2 cut(s) 274, 730
Cfr10I RCCGGY 1 cut(s) 559
Csp6I GTAC 2 cut(s) 68, 563
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 2 cut(s) 556, 596
CviJI RGCY 7 cut(s) 177, 226, 248, 355, 428, 536, 916
CviKI_1 RGCY 7 cut(s) 177, 226, 248, 355, 428, 536, 916
CviQI GTAC 2 cut(s) 68, 563
DdeI CTNAG 3 cut(s) 236, 828, 843
DpnI GATC 3 cut(s) 101, 234, 331
DpnII GATC 3 cut(s) 99, 232, 329
Eam1104I CTCTTC 2 cut(s) 759, 780
EarI CTCTTC 2 cut(s) 759, 780
Ecl136II GAGCTC 2 cut(s) 177, 226
Eco24I GRGCYC 2 cut(s) 179, 228
Eco32I GATATC 1 cut(s) 163
Eco53kI GAGCTC 2 cut(s) 177, 226
Eco57I CTGAAG 1 cut(s) 735
Eco91I GGTNACC 1 cut(s) 1051
EcoICRI GAGCTC 2 cut(s) 177, 226
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoO65I GGTNACC 1 cut(s) 1051
EcoRII CCWGG 1 cut(s) 863
EcoRV GATATC 1 cut(s) 163
EcoT22I ATGCAT 1 cut(s) 122
EcoT38I GRGCYC 2 cut(s) 179, 228
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 2 cut(s) 559, 599
FatI CATG 2 cut(s) 555, 595
FauNDI CATATG 1 cut(s) 491
FblI GTMKAC 1 cut(s) 271
Fnu4HI GCNGC 2 cut(s) 487, 627
FokI GGATG 1 cut(s) 1049
FriOI GRGCYC 2 cut(s) 179, 228
Fsp4HI GCNGC 2 cut(s) 487, 627
FspBI CTAG 2 cut(s) 462, 941
GluI GCNGC 2 cut(s) 487, 627
GsaI CCCAGC 1 cut(s) 1030
GsuI CTGGAG 1 cut(s) 1001
HapII CCGG 1 cut(s) 560
Hin1II CATG 2 cut(s) 559, 599
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 10, 188, 287, 299, 458, 860
HpaII CCGG 1 cut(s) 560
HphI GGTGA 2 cut(s) 9, 1014
Hpy166II GTNNAC 1 cut(s) 272
Hpy188I TCNGA 8 cut(s) 216, 329, 387, 441, 609, 685, 993, 1036
Hpy188III TCNNGA 6 cut(s) 137, 166, 291, 708, 941, 980
Hpy8I GTNNAC 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 947
HpyCH4III ACNGT 3 cut(s) 86, 725, 1084
HpyCH4IV ACGT 2 cut(s) 70, 295
HpyCH4V TGCA 7 cut(s) 114, 120, 486, 543, 595, 675, 839
HpyF3I CTNAG 3 cut(s) 236, 828, 843
HpySE526I ACGT 2 cut(s) 70, 295
Hsp92II CATG 2 cut(s) 559, 599
KpnI GGTACC 1 cut(s) 566
Kzo9I GATC 3 cut(s) 99, 232, 329
LmnI GCTCC 2 cut(s) 352, 994
Lsp1109I GCAGC 1 cut(s) 498
LweI GCATC 2 cut(s) 333, 432
MaeI CTAG 2 cut(s) 462, 941
MaeII ACGT 2 cut(s) 70, 295
MaeIII GTNAC 4 cut(s) 15, 581, 598, 1051
MalI GATC 3 cut(s) 101, 234, 331
MboI GATC 3 cut(s) 99, 232, 329
MboII GAAGA 8 cut(s) 272, 434, 533, 728, 776, 797, 824, 827
MflI RGATCY 2 cut(s) 99, 232
MhlI GDGCHC 2 cut(s) 179, 228
MluCI AATT 9 cut(s) 128, 217, 281, 361, 379, 651, 799, 956, 1014
Mph1103I ATGCAT 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 655
MseI TTAA 4 cut(s) 75, 336, 357, 501
MslI CAYNNNNRTG 2 cut(s) 494, 1035
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 560
MspR9I CCNGG 1 cut(s) 865
Mva1269I GAATGC 3 cut(s) 616, 991, 1030
MvaI CCWGG 1 cut(s) 865
MvnI CGCG 1 cut(s) 626
NdeI CATATG 1 cut(s) 491
NdeII GATC 3 cut(s) 99, 232, 329
NlaIII CATG 2 cut(s) 559, 599
NlaIV GGNNCC 2 cut(s) 553, 564
NmuCI GTSAC 1 cut(s) 15
NsiI ATGCAT 1 cut(s) 122
NspI RCATGY 1 cut(s) 599
PctI GAATGC 3 cut(s) 616, 991, 1030
PdmI GAANNNNTTC 1 cut(s) 655
PfeI GAWTC 6 cut(s) 10, 188, 287, 299, 458, 860
PflFI GACNNNGTC 1 cut(s) 620
PkrI GCNGC 2 cut(s) 488, 628
Psp124BI GAGCTC 2 cut(s) 179, 228
Psp6I CCWGG 1 cut(s) 863
PspEI GGTNACC 1 cut(s) 1051
PspFI CCCAGC 1 cut(s) 1026
PspGI CCWGG 1 cut(s) 863
PspN4I GGNNCC 2 cut(s) 553, 564
PsuI RGATCY 2 cut(s) 99, 232
PsyI GACNNNGTC 1 cut(s) 620
PvuII CAGCTG 1 cut(s) 248
RsaI GTAC 2 cut(s) 69, 564
RsaNI GTAC 2 cut(s) 68, 563
RseI CAYNNNNRTG 2 cut(s) 494, 1035
SacI GAGCTC 2 cut(s) 179, 228
SaqAI TTAA 4 cut(s) 75, 336, 357, 501
SatI GCNGC 2 cut(s) 487, 627
Sau3AI GATC 3 cut(s) 99, 232, 329
ScrFI CCNGG 1 cut(s) 865
SduI GDGCHC 2 cut(s) 179, 228
SfaNI GCATC 2 cut(s) 333, 432
SmiMI CAYNNNNRTG 2 cut(s) 494, 1035
SmlI CTYRAG 2 cut(s) 586, 917
SmoI CTYRAG 2 cut(s) 586, 917
Sse9I AATT 9 cut(s) 128, 217, 281, 361, 379, 651, 799, 956, 1014
SsiI CCGC 1 cut(s) 626
SspMI CTAG 2 cut(s) 462, 941
SstI GAGCTC 2 cut(s) 179, 228
StyD4I CCNGG 1 cut(s) 863
TaaI ACNGT 3 cut(s) 86, 725, 1084
TaiI ACGT 2 cut(s) 73, 298
TaqI TCGA 1 cut(s) 290
TasI AATT 9 cut(s) 128, 217, 281, 361, 379, 651, 799, 956, 1014
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 6 cut(s) 10, 188, 287, 299, 458, 860
Tru1I TTAA 4 cut(s) 75, 336, 357, 501
Tru9I TTAA 4 cut(s) 75, 336, 357, 501
TscAI CASTG 2 cut(s) 281, 730
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 1 cut(s) 486
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 6 cut(s) 299, 534, 789, 837, 873, 969
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 2 cut(s) 281, 730
Tth111I GACNNNGTC 1 cut(s) 620
XagI CCTNNNNNAGG 1 cut(s) 473
XapI RAATTY 2 cut(s) 361, 379
XbaI TCTAGA 1 cut(s) 940
XceI RCATGY 1 cut(s) 599
XcmI CCANNNNNNNNNTGG 2 cut(s) 398, 871
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 655
XspI CTAG 2 cut(s) 462, 941
Zsp2I ATGCAT 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.