Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00235

Orthogroup ID

OG0002877

Physical Location & Seq

Genomic Coordinates Forward (+)

160296 .. 162457

Gene Structure 2162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G006120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACAAGTTGTCAAGTTCAAGGAGCTTCTAGTGAGAGTATAATGATGGACAGATTCAGTGATCTCCCAGATGAAATTTCTCATCATATTATTTCGTTCCTCTCTGACTCTTTAAGGAACCTCATTCAAGTGGGAGCTGTGTCCAAAAGATGTAGGAAACTTTATCTGTCAGTTCCATCAATAACTATTGATGCAAGTAGCGTTGCAGATTGCACCAAGTTGCGAGTAAGATTACTGAACTCTTGGGATAGGTACTTGTTTCACCGTGGTAATAATAAGATTGAGCACCTTAGTATTTACTGGGTTTTCAGAACCTCTTGGGAGGCAAAGATAAGTGATGACTATTTCCGAGTCACCACATGGATCCAAAATGCAGTGAGGTGTAATGTTGAAGTACTTCACCTTGATCTGAATCAATACGACCGCAGGATGACAGTTGTGTTGCCGTCTTGCATCTTCCTTTGTCATTCTTTGAGGACTCTATCTGTGAATTTGTATATGGGCAAGATTCAGTCACCCAACTTGTCTTTTTCCTGTAATCTCCACTACTTGAAGTTGAAGTATGTACGTCTTAAAGATGATGGTATTTTCAAATGGATCTCATATTCCTGCAAATGCATTAAGGAATTACATCTTGAAAAACTTAAAAATTTCAAATGGAGTGGGAATTTTCTGAACCATCATCATCTTGGGAACTTGATGTGTTTAAAAGAAGCTGACATATTTCTGATGCCCGATTTAGATGATTCTAGCAACCTATTTGAGGTTCTTTGCAGCATATGTATGGCTTTATGCAGGGGAGGTTCCATGCCGGTACCATTAGATAGTATTCGTTACTTGAGTTTGCATGTTACAAGTCTGAATGCTGACTTGGTCGCGGCAATGGTGTCTATTTTTAGAGGAATTACTTCTTTGAATACTTTGTGCATAATGTCTGACCTATCCAAGTCATCTGTATCTGGAACTGAAGATGACAGTGATATTGAGGAAGTGGTTGAGGATAATGATACGGAGGAAGAGAATAATGAAAACGAGGAAGAGGACAATGACAATTATACCGAGGAAGAAGATAATGAAACTAAGGAGGAAAATGCAACTGAGAAAGAGAATAATGCTGGCTGTGGAGGATTATGCGACTGTTGCAATGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBD

Protein Analysis

383

Amino Acids

43.66

Weight (kDa)

5.0

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002877)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0157031 RchiOBHm_Chr5g0068981 RchiOBHm_Chr5g0069001
rosa_laevigata	RLG00000036027 RLG00000036029
rosa_multiflora	Rmu_sc0000853.1_g000002 Rmu_sc0000853.1_g000004 Rmu_sc0000936.1_g000002 Rmu_sc0006282.1_g000034 Rmu_sc0006282.1_g000035
rosa_roxburghii	Rroxscaffold_1G00011720 Rroxscaffold_1G00011740 Rroxscaffold_1G00029480 Rroxscaffold_3G00231060
rosa_rugosa	Rorug05G0395500 Rorug05G0395600 Rorug07G0214700 Rorug07G0214900
rosa_samantha	Rh2BG537000 Rh2BG537100 Rh2BG537200 Rh2DG545800 Rh2DG545900 Rh2DG546000 Rh5AG452100 Rh5AG452300 Rh5BG471100 Rh5BG471300 Rh5CG493500 Rh5CG493800 Rh5DG483800 Rh5DG484000 Rh7BG348100 Rh7BG348200 Rh7BG348400
rosa_wichuraiana	Rw0G006120 Rw0G006140 Rw2G043220 Rw5G042230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	814
AccB1I	GGYRCC	1 cut(s)	814
AccII	CGCG	1 cut(s)	878
AciI	CCGC	2 cut(s)	424, 878
AclWI	GGATC	3 cut(s)	358, 371, 605
AcsI	RAATTY	4 cut(s)	75, 490, 649, 667
AcuI	CTGAAG	1 cut(s)	987
AfaI	GTAC	4 cut(s)	254, 396, 567, 816
AfiI	CCNNNNNNNGG	1 cut(s)	763
AgsI	TTSAA	9 cut(s)	20, 128, 392, 553, 559, 592, 638, 655, 916
AhdI	GACNNNNNGTC	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AluBI	AGCT	3 cut(s)	26, 137, 716
AluI	AGCT	3 cut(s)	26, 137, 716
Alw21I	GWGCWC	1 cut(s)	288
AlwI	GGATC	3 cut(s)	358, 371, 605
ApeKI	GCWGC	1 cut(s)	774
ApoI	RAATTY	4 cut(s)	75, 490, 649, 667
Asp700I	GAANNNNTTC	2 cut(s)	396, 907
Asp718I	GGTACC	1 cut(s)	814
AsuHPI	GGTGA	4 cut(s)	254, 346, 392, 507
BamHI	GGATCC	1 cut(s)	363
BanI	GGYRCC	1 cut(s)	814
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	786
BccI	CCATC	4 cut(s)	40, 184, 575, 687
BceAI	ACGGC	1 cut(s)	430
BfaI	CTAG	2 cut(s)	30, 750
BisI	GCNGC	2 cut(s)	775, 879
BlsI	GCNGC	2 cut(s)	776, 880
BmcAI	AGTACT	1 cut(s)	396
BmeRI	GACNNNNNGTC	1 cut(s)	9
BmiI	GGNNCC	4 cut(s)	119, 365, 805, 816
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	3 cut(s)	181, 462, 720
BmuI	ACTGGG	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	859
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	2 cut(s)	265, 1059
Bsc4I	CCNNNNNNNGG	1 cut(s)	763
Bse118I	RCCGGY	1 cut(s)	811
Bse1I	ACTGG	1 cut(s)	305
Bse3DI	GCAATG	2 cut(s)	888, 1150
Bse8I	GATNNNNATC	1 cut(s)	411
BseDI	CCNNGG	2 cut(s)	265, 1059
BseGI	GGATG	1 cut(s)	435
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	763
BseMI	GCAATG	2 cut(s)	888, 1150
BseMII	CTCAG	1 cut(s)	1089
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	1 cut(s)	786
Bsh1236I	CGCG	1 cut(s)	878
Bsh1285I	CGRYCG	1 cut(s)	424
BshNI	GGYRCC	1 cut(s)	814
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	812
BslI	CCNNNNNNNGG	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	868
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	61, 363, 406, 597
BspACI	CCGC	2 cut(s)	424, 878
BspCNI	CTCAG	1 cut(s)	1090
BspFNI	CGCG	1 cut(s)	878
BspLI	GGNNCC	4 cut(s)	119, 365, 805, 816
BspPI	GGATC	3 cut(s)	358, 371, 605
BspT107I	GGYRCC	1 cut(s)	814
BsrDI	GCAATG	2 cut(s)	888, 1150
BsrFI	RCCGGY	1 cut(s)	811
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	811
BssECI	CCNNGG	2 cut(s)	265, 1059
BssMI	GATC	4 cut(s)	61, 363, 406, 597
Bst4CI	ACNGT	4 cut(s)	266, 436, 977, 1139
Bst6I	CTCTTC	2 cut(s)	1011, 1032
BstC8I	GCNNGC	1 cut(s)	1117
BstDEI	CTNAG	3 cut(s)	290, 1080, 1098
BstDSI	CCRYGG	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	761
BstF5I	GGATG	1 cut(s)	435
BstFNI	CGCG	1 cut(s)	878
BstKTI	GATC	4 cut(s)	64, 366, 409, 600
BstMBI	GATC	4 cut(s)	61, 363, 406, 597
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	1 cut(s)	1140
BstNSI	RCATGY	1 cut(s)	851
BstUI	CGCG	1 cut(s)	878
BstV1I	GCAGC	1 cut(s)	786
BstX2I	RGATCY	2 cut(s)	363, 597
BstYI	RGATCY	2 cut(s)	363, 597
BtgI	CCRYGG	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	64, 381, 982
Cac8I	GCNNGC	1 cut(s)	1117
Cfr10I	RCCGGY	1 cut(s)	811
Csp6I	GTAC	4 cut(s)	253, 395, 566, 815
CspCI	CAANNNNNGTGG	2 cut(s)	643, 678
CviAII	CATG	3 cut(s)	360, 808, 848
CviJI	RGCY	6 cut(s)	26, 137, 716, 788, 1119, 1149
CviKI_1	RGCY	6 cut(s)	26, 137, 716, 788, 1119, 1149
CviQI	GTAC	4 cut(s)	253, 395, 566, 815
DdeI	CTNAG	3 cut(s)	290, 1080, 1098
DpnI	GATC	4 cut(s)	63, 365, 408, 599
DpnII	GATC	4 cut(s)	61, 363, 406, 597
DraI	TTTAAA	1 cut(s)	708
DriI	GACNNNNNGTC	1 cut(s)	9
Eam1104I	CTCTTC	2 cut(s)	1011, 1032
Eam1105I	GACNNNNNGTC	1 cut(s)	9
EarI	CTCTTC	2 cut(s)	1011, 1032
Eco57I	CTGAAG	1 cut(s)	987
EcoNI	CCTNNNNNAGG	1 cut(s)	761
EcoT22I	ATGCAT	1 cut(s)	620
FaeI	CATG	3 cut(s)	363, 811, 851
FatI	CATG	3 cut(s)	359, 807, 847
FauNDI	CATATG	1 cut(s)	779
Fnu4HI	GCNGC	2 cut(s)	775, 879
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	2 cut(s)	775, 879
FspBI	CTAG	2 cut(s)	30, 750
GluI	GCNGC	2 cut(s)	775, 879
HapII	CCGG	1 cut(s)	812
Hin1II	CATG	3 cut(s)	363, 811, 851
HinfI	GANTC	7 cut(s)	54, 107, 351, 412, 478, 508, 746
HpaII	CCGG	1 cut(s)	812
HphI	GGTGA	4 cut(s)	254, 346, 392, 507
Hpy188I	TCNGA	8 cut(s)	106, 311, 350, 411, 675, 729, 861, 937
Hpy188III	TCNNGA	2 cut(s)	635, 960
HpyCH4III	ACNGT	4 cut(s)	266, 436, 977, 1139
HpyCH4IV	ACGT	1 cut(s)	568
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1140
HpyF3I	CTNAG	3 cut(s)	290, 1080, 1098
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	3 cut(s)	363, 811, 851
KpnI	GGTACC	1 cut(s)	818
Kzo9I	GATC	4 cut(s)	61, 363, 406, 597
LmnI	GCTCC	2 cut(s)	23, 134
LpnPI	CCDG	9 cut(s)	81, 286, 412, 547, 622, 781, 825, 945, 1101
Lsp1109I	GCAGC	1 cut(s)	786
LweI	GCATC	3 cut(s)	181, 462, 720
MaeI	CTAG	2 cut(s)	30, 750
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	4 cut(s)	352, 513, 833, 850
MalI	GATC	4 cut(s)	63, 365, 408, 599
MboI	GATC	4 cut(s)	61, 363, 406, 597
MboII	GAAGA	6 cut(s)	448, 980, 1028, 1049, 1076, 1079
MflI	RGATCY	2 cut(s)	363, 597
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	7 cut(s)	75, 490, 626, 649, 667, 903, 1051
MlyI	GAGTC	3 cut(s)	101, 360, 472
Mph1103I	ATGCAT	1 cut(s)	620
MroXI	GAANNNNTTC	2 cut(s)	396, 907
MseI	TTAA	5 cut(s)	113, 573, 621, 645, 707
MslI	CAYNNNNRTG	2 cut(s)	128, 782
MspI	CCGG	1 cut(s)	812
Mva1269I	GAATGC	1 cut(s)	868
MvnI	CGCG	1 cut(s)	878
MwoI	GCNNNNNNNGC	1 cut(s)	1140
NdeI	CATATG	1 cut(s)	779
NdeII	GATC	4 cut(s)	61, 363, 406, 597
NlaIII	CATG	3 cut(s)	363, 811, 851
NlaIV	GGNNCC	4 cut(s)	119, 365, 805, 816
NmuCI	GTSAC	2 cut(s)	352, 513
NsiI	ATGCAT	1 cut(s)	620
NspI	RCATGY	1 cut(s)	851
PctI	GAATGC	1 cut(s)	868
PdmI	GAANNNNTTC	2 cut(s)	396, 907
PfeI	GAWTC	4 cut(s)	54, 412, 508, 746
PflFI	GACNNNGTC	1 cut(s)	872
PkrI	GCNGC	2 cut(s)	776, 880
PleI	GAGTC	3 cut(s)	101, 359, 472
PpsI	GAGTC	3 cut(s)	101, 359, 472
PspN4I	GGNNCC	4 cut(s)	119, 365, 805, 816
PsuI	RGATCY	2 cut(s)	363, 597
PsyI	GACNNNGTC	1 cut(s)	872
RsaI	GTAC	4 cut(s)	254, 396, 567, 816
RsaNI	GTAC	4 cut(s)	253, 395, 566, 815
RseI	CAYNNNNRTG	2 cut(s)	128, 782
SaqAI	TTAA	5 cut(s)	113, 573, 621, 645, 707
SatI	GCNGC	2 cut(s)	775, 879
Sau3AI	GATC	4 cut(s)	61, 363, 406, 597
ScaI	AGTACT	1 cut(s)	396
SchI	GAGTC	3 cut(s)	101, 360, 472
SduI	GDGCHC	1 cut(s)	288
SfaNI	GCATC	3 cut(s)	181, 462, 720
SmiMI	CAYNNNNRTG	2 cut(s)	128, 782
SmlI	CTYRAG	1 cut(s)	838
SmoI	CTYRAG	1 cut(s)	838
Sse9I	AATT	7 cut(s)	75, 490, 626, 649, 667, 903, 1051
SsiI	CCGC	2 cut(s)	424, 878
SspMI	CTAG	2 cut(s)	30, 750
TaaI	ACNGT	4 cut(s)	266, 436, 977, 1139
TaiI	ACGT	1 cut(s)	571
TasI	AATT	7 cut(s)	75, 490, 626, 649, 667, 903, 1051
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	881
TfiI	GAWTC	4 cut(s)	54, 412, 508, 746
Tru1I	TTAA	5 cut(s)	113, 573, 621, 645, 707
Tru9I	TTAA	5 cut(s)	113, 573, 621, 645, 707
TscAI	CASTG	3 cut(s)	64, 381, 982
TseFI	GTSAC	2 cut(s)	352, 513
TseI	GCWGC	1 cut(s)	774
Tsp45I	GTSAC	2 cut(s)	352, 513
TspDTI	ATGAA	3 cut(s)	87, 1041, 1089
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	3 cut(s)	64, 381, 982
Tth111I	GACNNNGTC	1 cut(s)	872
XagI	CCTNNNNNAGG	1 cut(s)	761
XapI	RAATTY	4 cut(s)	75, 490, 649, 667
XceI	RCATGY	1 cut(s)	851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	686
XmnI	GAANNNNTTC	2 cut(s)	396, 907
XspI	CTAG	2 cut(s)	30, 750
ZrmI	AGTACT	1 cut(s)	396
Zsp2I	ATGCAT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.