Rh5DG484000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002877
Physical Location & Seq
Reverse (-)
76174680 .. 76175324
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG484000.1

Sequence Viewer

Length: 558 bp
ATGCCGGTACCATTAGATGGTATTCGTTACTTGAGTTTGCATGTTACAAGTCTGAATGCTGACTTGGTCGCGGCAATGGTGTCTATTTTTAGAGGAATTACTTCTTTGAATACTTTGTGCATAATGTCTGACCTATCCAAGTCATCTGTATCTGGAACTGAAGATGACAGTGATATTGAGGAAGTGGTTGAGGATAATGATACGGAGGAAGAGAATAATGAAAACGAGGAAGAGGACAATGACAATTATACCGAGGAAGAAGATAATGAAACTGAGGAAAATGCAACTGAGAAAGAGAATAATGAATCCAGGTTCAATGTGGAATACTGGAAATCCCAAAACCTAACCTTTATTTATCAGCTCAAGGAAGTGAGAATAGACCTTCTAGATGGTAATAATGAATTGGAGTTCGCAAGGTATATTCTGGAGAATGCTCCGAGTTTGGAGAAAATGGTCATAATTCAATCACCCCAGCATTCGGATGTTGTGGAGATGGTAACCAAAAGCAAGATGATTTCCAATGCGACAGTTGTTTTACAAGAAAGGCAGAGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

185

Amino Acids

21.08

Weight (kDa)

4.06

Isoelectric Point (pI)

60.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 132 - 153 3e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 7
AccB1I GGYRCC 1 cut(s) 7
AccB7I CCANNNNNTGG 1 cut(s) 17
AccII CGCG 1 cut(s) 71
AciI CCGC 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 1 cut(s) 9
AfiI CCNNNNNNNGG 2 cut(s) 17, 478
AgsI TTSAA 3 cut(s) 109, 316, 464
AjnI CCWGG 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 361
AluI AGCT 1 cut(s) 361
Asp700I GAANNNNTTC 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 7
AsuHPI GGTGA 1 cut(s) 459
BanI GGYRCC 1 cut(s) 7
BccI CCATC 3 cut(s) 11, 383, 487
BciT130I CCWGG 1 cut(s) 310
BfaI CTAG 1 cut(s) 386
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 446
BpuEI CTTGAG 2 cut(s) 52, 347
BsaJI CCNNGG 1 cut(s) 252
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 478
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 332
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 1 cut(s) 310
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 487
BseLI CCNNNNNNNGG 2 cut(s) 17, 478
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 264, 279
BseNI ACTGG 1 cut(s) 332
BseYI CCCAGC 1 cut(s) 471
Bsh1236I CGCG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 7
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 17, 478
BsmI GAATGC 3 cut(s) 61, 436, 475
BspACI CCGC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 265, 280
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 7
BsrDI GCAATG 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 332
BssAI RCCGGY 1 cut(s) 4
BssECI CCNNGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 310
Bst4CI ACNGT 2 cut(s) 170, 529
Bst6I CTCTTC 2 cut(s) 204, 225
BstDEI CTNAG 2 cut(s) 273, 288
BstEII GGTNACC 1 cut(s) 496
BstF5I GGATG 1 cut(s) 487
BstFNI CGCG 1 cut(s) 71
BstNI CCWGG 1 cut(s) 310
BstNSI RCATGY 1 cut(s) 44
BstPI GGTNACC 1 cut(s) 496
BstSCI CCNGG 1 cut(s) 308
BstUI CGCG 1 cut(s) 71
BtsCI GGATG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 175
Cfr10I RCCGGY 1 cut(s) 4
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 41
CviJI RGCY 1 cut(s) 361
CviKI_1 RGCY 1 cut(s) 361
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 273, 288
Eam1104I CTCTTC 2 cut(s) 204, 225
EarI CTCTTC 2 cut(s) 204, 225
Eco57I CTGAAG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 496
EcoO65I GGTNACC 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 308
FaeI CATG 1 cut(s) 44
FaiI YATR 5 cut(s) 42, 122, 249, 420, 458
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 494
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 386
GluI GCNGC 1 cut(s) 72
GsaI CCCAGC 1 cut(s) 475
GsuI CTGGAG 1 cut(s) 446
HapII CCGG 1 cut(s) 5
Hin1II CATG 1 cut(s) 44
HinfI GANTC 1 cut(s) 305
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 459
Hpy188I TCNGA 4 cut(s) 54, 130, 438, 481
Hpy188III TCNNGA 3 cut(s) 153, 386, 425
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 170, 529
HpyCH4V TGCA 3 cut(s) 40, 120, 284
HpyF3I CTNAG 2 cut(s) 273, 288
Hsp92II CATG 1 cut(s) 44
KpnI GGTACC 1 cut(s) 11
LmnI GCTCC 1 cut(s) 439
LpnPI CCDG 7 cut(s) 18, 138, 295, 313, 322, 410, 485
MaeI CTAG 1 cut(s) 386
MaeIII GTNAC 3 cut(s) 26, 43, 496
MboII GAAGA 5 cut(s) 173, 221, 242, 269, 272
MluCI AATT 4 cut(s) 96, 244, 401, 459
MnlI CCTC 8 cut(s) 86, 172, 184, 199, 220, 226, 247, 268
MroXI GAANNNNTTC 1 cut(s) 100
MslI CAYNNNNRTG 1 cut(s) 480
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 310
Mva1269I GAATGC 3 cut(s) 61, 436, 475
MvaI CCWGG 1 cut(s) 310
MvnI CGCG 1 cut(s) 71
NlaIII CATG 1 cut(s) 44
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 44
PctI GAATGC 3 cut(s) 61, 436, 475
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 1 cut(s) 305
PflFI GACNNNGTC 1 cut(s) 65
PflMI CCANNNNNTGG 1 cut(s) 17
PkrI GCNGC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 308
PspEI GGTNACC 1 cut(s) 496
PspFI CCCAGC 1 cut(s) 471
PspGI CCWGG 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 9
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 480
SatI GCNGC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 310
SetI ASST 7 cut(s) 135, 314, 345, 350, 363, 384, 419
SmiMI CAYNNNNRTG 1 cut(s) 480
SmlI CTYRAG 2 cut(s) 31, 362
SmoI CTYRAG 2 cut(s) 31, 362
Sse9I AATT 4 cut(s) 96, 244, 401, 459
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 308
TaaI ACNGT 2 cut(s) 170, 529
TasI AATT 4 cut(s) 96, 244, 401, 459
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 234, 282, 318, 414
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 1 cut(s) 44
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.