RLG00000036029

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002877
Physical Location & Seq
Reverse (-)
75102186 .. 75104202
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036029

Sequence Viewer

Length: 846 bp
ATGGACAGATTCAGTGATCTCCCAGATGAAATTGGTCATCATATTATTTCGTTCCTCTCTGACTCTTTAACGAACCTCGTTCAAGTGGGTGCTGTGTCCAAAAGCTGTAGGAAACTTTATCTGTCAGTTCCATCAATAATTATTGATGCAAGTAGCGTTGCAGATTGCACCAAGTTGCGAGCAAGATTGTTGAACTCTTGGGATAGGTACTTGTTTCACCGTGGTAATAATAAGATTGAGCGCCTTAGTATTTACTGGGCTTTATGCAGGAGAGGTTCCACGCCGGTACCATTAGATTGTATTCGTTACTTGAGTTTGCATGTTACAAGTCTGAATGCTGACTTGGTCGCGGCAATGGTGTCTATTTTTAGAGGAATTACTTCTTTGAATACTTTGTGCATAATGTCTGACCTATCCAAGTCATCTGTATCTGGAACTGAAGATGACAGTGATATTGAGGAAGTGGTTGAGGATGATGATACGGAGGAAGAGAATAATGAAAACGAGGAAGAGGACAATGACAATTATACTGAGGAAGAAGATAATGAAACTAAGGAGGAAAATGCAACTGAGAAAGAGAATAATTTCCAGGAATCCAGGTTCAATGTGGAATACTGGAAATCCCAAAACCTAACCTTTATTTATCAGCTCAAGGAAGTGAGAATAGACCTTCTAGATGGTAATAATGAATTGGAGTTCGCAAGGTATATTCTGGAGAATGCTCCGAGTTTGGAGAAAATGGTCATAATTCAATCACCCCAGCATTCGGATGTTGTGGAGATGGTAACCAAAAGCAAGATGATTTCCAATGCGACAGTTGTTTTACAAGAAAGGCAGAGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

282

Amino Acids

32.09

Weight (kDa)

4.49

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 228 - 249 5.4e-06 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 286
AccB1I GGYRCC 1 cut(s) 286
AccII CGCG 1 cut(s) 350
AciI CCGC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 459
AfaI GTAC 2 cut(s) 209, 288
AfiI CCNNNNNNNGG 1 cut(s) 766
AgsI TTSAA 5 cut(s) 83, 193, 388, 604, 752
AjnI CCWGG 2 cut(s) 588, 596
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AloI GAACNNNNNNTCC 2 cut(s) 584, 616
AluBI AGCT 2 cut(s) 105, 649
AluI AGCT 2 cut(s) 105, 649
Asp700I GAANNNNTTC 2 cut(s) 379, 584
Asp718I GGTACC 1 cut(s) 286
AspLEI GCGC 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 209, 747
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BanI GGYRCC 1 cut(s) 286
BccI CCATC 3 cut(s) 139, 671, 775
BciT130I CCWGG 2 cut(s) 590, 598
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 244
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme1390I CCNGG 2 cut(s) 590, 598
BmiI GGNNCC 2 cut(s) 277, 288
BmrFI CCNGG 2 cut(s) 590, 598
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 1 cut(s) 136
BmuI ACTGGG 1 cut(s) 265
BpmI CTGGAG 1 cut(s) 734
BpuEI CTTGAG 2 cut(s) 331, 635
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 260, 620
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 2 cut(s) 590, 598
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 2 cut(s) 478, 775
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 522, 561
BseNI ACTGG 2 cut(s) 260, 620
BseYI CCCAGC 1 cut(s) 759
Bsh1236I CGCG 1 cut(s) 350
BshNI GGYRCC 1 cut(s) 286
BsiSI CCGG 1 cut(s) 284
BslI CCNNNNNNNGG 1 cut(s) 766
BsmI GAATGC 3 cut(s) 340, 724, 763
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 523, 562
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 277, 288
BspT107I GGYRCC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 2 cut(s) 260, 620
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 1 cut(s) 16
Bst2UI CCWGG 2 cut(s) 590, 598
Bst4CI ACNGT 3 cut(s) 221, 449, 817
Bst6I CTCTTC 2 cut(s) 483, 504
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 4 cut(s) 245, 531, 552, 570
BstDSI CCRYGG 1 cut(s) 220
BstEII GGTNACC 1 cut(s) 784
BstF5I GGATG 2 cut(s) 478, 775
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 590, 598
BstNSI RCATGY 1 cut(s) 323
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 2 cut(s) 588, 596
BstSFI CTRYAG 1 cut(s) 106
BstUI CGCG 1 cut(s) 350
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 2 cut(s) 478, 775
BtsIMutI CAGTG 2 cut(s) 19, 454
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 243
Cfr10I RCCGGY 1 cut(s) 283
Csp6I GTAC 2 cut(s) 208, 287
CviAII CATG 1 cut(s) 320
CviJI RGCY 3 cut(s) 105, 260, 649
CviKI_1 RGCY 3 cut(s) 105, 260, 649
CviQI GTAC 2 cut(s) 208, 287
DdeI CTNAG 4 cut(s) 245, 531, 552, 570
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 483, 504
EarI CTCTTC 2 cut(s) 483, 504
Eco57I CTGAAG 1 cut(s) 459
Eco91I GGTNACC 1 cut(s) 784
EcoO65I GGTNACC 1 cut(s) 784
EcoRII CCWGG 2 cut(s) 588, 596
FaeI CATG 1 cut(s) 323
FaiI YATR 7 cut(s) 42, 265, 321, 401, 528, 708, 746
FatI CATG 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 2 cut(s) 485, 782
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 1 cut(s) 674
GlaI GCGC 1 cut(s) 242
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 734
HaeII RGCGCY 1 cut(s) 244
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 243
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HinfI GANTC 3 cut(s) 9, 62, 593
HpaII CCGG 1 cut(s) 284
HphI GGTGA 2 cut(s) 209, 747
Hpy188I TCNGA 5 cut(s) 61, 333, 409, 726, 769
Hpy188III TCNNGA 3 cut(s) 432, 674, 713
HpyAV CCTTC 1 cut(s) 680
HpyCH4III ACNGT 3 cut(s) 221, 449, 817
HpyCH4V TGCA 7 cut(s) 149, 161, 168, 267, 319, 399, 566
HpyF3I CTNAG 4 cut(s) 245, 531, 552, 570
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 1 cut(s) 241
KpnI GGTACC 1 cut(s) 290
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 727
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 674
MaeIII GTNAC 3 cut(s) 305, 322, 784
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 5 cut(s) 452, 500, 521, 548, 551
MluCI AATT 7 cut(s) 30, 138, 375, 523, 583, 689, 747
MlyI GAGTC 1 cut(s) 56
MroXI GAANNNNTTC 2 cut(s) 379, 584
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 768
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 2 cut(s) 590, 598
Mva1269I GAATGC 3 cut(s) 340, 724, 763
MvaI CCWGG 2 cut(s) 590, 598
MvnI CGCG 1 cut(s) 350
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 2 cut(s) 277, 288
NspI RCATGY 1 cut(s) 323
PctI GAATGC 3 cut(s) 340, 724, 763
PdmI GAANNNNTTC 2 cut(s) 379, 584
PfeI GAWTC 2 cut(s) 9, 593
PflFI GACNNNGTC 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 588
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 588, 596
PspEI GGTNACC 1 cut(s) 784
PspFI CCCAGC 1 cut(s) 759
PspGI CCWGG 2 cut(s) 588, 596
PspN4I GGNNCC 2 cut(s) 277, 288
PsyI GACNNNGTC 1 cut(s) 344
RsaI GTAC 2 cut(s) 209, 288
RsaNI GTAC 2 cut(s) 208, 287
RseI CAYNNNNRTG 1 cut(s) 768
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 1 cut(s) 16
SchI GAGTC 1 cut(s) 56
ScrFI CCNGG 2 cut(s) 590, 598
SfaNI GCATC 1 cut(s) 136
SfcI CTRYAG 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 2 cut(s) 310, 650
SmoI CTYRAG 2 cut(s) 310, 650
Sse9I AATT 7 cut(s) 30, 138, 375, 523, 583, 689, 747
SsiI CCGC 1 cut(s) 350
SspMI CTAG 1 cut(s) 674
StyD4I CCNGG 2 cut(s) 588, 596
TaaI ACNGT 3 cut(s) 221, 449, 817
TasI AATT 7 cut(s) 30, 138, 375, 523, 583, 689, 747
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 2 cut(s) 9, 593
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 2 cut(s) 19, 454
TspDTI ATGAA 4 cut(s) 42, 513, 561, 702
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 19, 454
Tth111I GACNNNGTC 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 673
XceI RCATGY 1 cut(s) 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 604
XmnI GAANNNNTTC 2 cut(s) 379, 584
XspI CTAG 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.