RLG00000036027

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002877
Physical Location & Seq
Reverse (-)
75097302 .. 75099331
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036027

Sequence Viewer

Length: 867 bp
ATGGAGCCCAAGTGTGAGTTGGGAGCAATGACAAGTTCTCATGTTCCAGGAACTTCTAGTGAGAGTATCATCATCGACAGATTTAGTGATCTCCCAGATGAAATTGCTCATCACATTCTTTCCTTCCACAGTGGCATCTTAATGAACCTCATCCGAGTGGGCGCAGTGTCCAAGAGATGCAGACAACTTTATCTATCACTTCCGTCTTTGATTATTGTTTCAGGTCATGTTTTAAACTGCACCAGGTCGAGAGTAAGGTTGATGAATTATTGGGACAGCATAGATGAGAAGTTCAATTTCAAACTTGAAAGTGTTATAGAGGCTTTTTTCATGGAAAGTTCGATGCCATTACCATTAGATAATATTCATGACTTGACTTTGCATGTTAGAAGCGTGAATGATGACTTCGTCCCAGCAATGGTCTCTCTTTTCAGAGGAATCACTTCTTTGAATACTTTATGCATAACGTCTGTCACATACAAGCAAGCAATTGAGGAAGCGTATAATGAAATTAACGAAGAGGATAATAATTATGAGGAAGAGGACAGCGGAACTGAGCAGGAGAATAGTGAGACTACAGAAGAGGATGGTGCAACTGAGGAAGGGGATAATGCTCCCAAGTTTGATGTGGAATATTGGAAATCCCAAAACCTTAATTTTACTTGTGAGCTAAAGGAGGTGAAACTGGAGATTGTGGAGGGTAATGATAATGAATTGGATTTAGCAAGGTACATTCTGGAGCATGCTCAGAAATTGAAGAAAATGGTGATTCTTCATTCACCGCAGAATCCGGATATTTTGGAAATGGTAAGAAAAAGCAAGATGATATCCACTGCAACAGTGGTTTTGCAAGAAGTAATATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

289

Amino Acids

32.75

Weight (kDa)

4.67

Isoelectric Point (pI)

53.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 224 - 257 1e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 790
AciI CCGC 2 cut(s) 549, 782
AfaI GTAC 1 cut(s) 731
AfiI CCNNNNNNNGG 1 cut(s) 418
AgsI TTSAA 5 cut(s) 295, 301, 308, 451, 757
AjnI CCWGG 2 cut(s) 46, 242
AluBI AGCT 1 cut(s) 670
AluI AGCT 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 427, 566
Aor13HI TCCGGA 1 cut(s) 790
Asp700I GAANNNNTTC 1 cut(s) 442
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 3 cut(s) 691, 771, 778
BanII GRGCYC 1 cut(s) 9
BccI CCATC 1 cut(s) 581
BciT130I CCWGG 2 cut(s) 48, 244
BcoDI GTCTC 2 cut(s) 427, 566
BfaI CTAG 1 cut(s) 57
BfmI CTRYAG 1 cut(s) 576
Bme1390I CCNGG 2 cut(s) 48, 244
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 48, 244
BmsI GCATC 3 cut(s) 144, 167, 333
BpmI CTGGAG 2 cut(s) 707, 758
BsaI GGTCTC 1 cut(s) 427
BsaWI WCCGGW 1 cut(s) 790
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 690
Bse3DI GCAATG 2 cut(s) 33, 423
BseAI TCCGGA 1 cut(s) 790
BseBI CCWGG 2 cut(s) 48, 244
BseGI GGATG 2 cut(s) 150, 592
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 2 cut(s) 33, 423
BseMII CTCAG 3 cut(s) 546, 588, 761
BseNI ACTGG 1 cut(s) 690
BseYI CCCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 223
BsiSI CCGG 1 cut(s) 791
BslFI GGGAC 2 cut(s) 287, 395
BslI CCNNNNNNNGG 1 cut(s) 418
BsmAI GTCTC 2 cut(s) 427, 566
BsmFI GGGAC 2 cut(s) 287, 395
Bso31I GGTCTC 1 cut(s) 427
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 790
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 2 cut(s) 549, 782
BspCNI CTCAG 3 cut(s) 547, 589, 760
BspEI TCCGGA 1 cut(s) 790
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 6
BspTNI GGTCTC 1 cut(s) 427
BsrDI GCAATG 2 cut(s) 33, 423
BsrI ACTGG 1 cut(s) 690
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 2 cut(s) 48, 244
Bst4CI ACNGT 2 cut(s) 131, 841
Bst6I CTCTTC 3 cut(s) 513, 534, 576
BstC8I GCNNGC 2 cut(s) 486, 744
BstDEI CTNAG 3 cut(s) 555, 597, 747
BstF5I GGATG 2 cut(s) 150, 592
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 427, 566
BstMBI GATC 1 cut(s) 88
BstNI CCWGG 2 cut(s) 48, 244
BstNSI RCATGY 2 cut(s) 386, 746
BstSCI CCNGG 2 cut(s) 46, 242
BstSFI CTRYAG 1 cut(s) 576
BtsCI GGATG 2 cut(s) 150, 592
BtsI GCAGTG 2 cut(s) 171, 831
BtsIMutI CAGTG 4 cut(s) 136, 171, 831, 846
Cac8I GCNNGC 2 cut(s) 486, 744
CciI TCATGA 1 cut(s) 367
CfoI GCGC 1 cut(s) 164
CsiI ACCWGGT 1 cut(s) 242
Csp6I GTAC 1 cut(s) 730
CviAII CATG 6 cut(s) 41, 227, 331, 368, 383, 743
CviJI RGCY 3 cut(s) 7, 323, 670
CviKI_1 RGCY 3 cut(s) 7, 323, 670
CviQI GTAC 1 cut(s) 730
DdeI CTNAG 3 cut(s) 555, 597, 747
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DraI TTTAAA 1 cut(s) 234
Eam1104I CTCTTC 3 cut(s) 513, 534, 576
EarI CTCTTC 3 cut(s) 513, 534, 576
Eco24I GRGCYC 1 cut(s) 9
Eco31I GGTCTC 1 cut(s) 427
Eco32I GATATC 1 cut(s) 828
EcoRII CCWGG 2 cut(s) 46, 242
EcoRV GATATC 1 cut(s) 828
EcoT22I ATGCAT 1 cut(s) 464
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 6 cut(s) 44, 230, 334, 371, 386, 746
FaqI GGGAC 2 cut(s) 287, 395
FatI CATG 6 cut(s) 40, 226, 330, 367, 382, 742
FokI GGATG 2 cut(s) 137, 599
FriOI GRGCYC 1 cut(s) 9
FspBI CTAG 1 cut(s) 57
GlaI GCGC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 416
GsuI CTGGAG 2 cut(s) 707, 758
HapII CCGG 1 cut(s) 791
HhaI GCGC 1 cut(s) 164
Hin1II CATG 6 cut(s) 44, 230, 334, 371, 386, 746
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 3 cut(s) 438, 769, 787
HpaII CCGG 1 cut(s) 791
HphI GGTGA 3 cut(s) 691, 771, 778
Hpy188I TCNGA 3 cut(s) 155, 434, 750
Hpy188III TCNNGA 4 cut(s) 249, 368, 737, 791
HpyAV CCTTC 2 cut(s) 133, 596
HpyCH4III ACNGT 2 cut(s) 131, 841
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 7 cut(s) 180, 240, 382, 462, 593, 836, 850
HpyF3I CTNAG 3 cut(s) 555, 597, 747
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 6 cut(s) 44, 230, 334, 371, 386, 746
HspAI GCGC 1 cut(s) 162
Kpn2I TCCGGA 1 cut(s) 790
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 4 cut(s) 4, 23, 619, 739
LweI GCATC 3 cut(s) 144, 167, 333
MabI ACCWGGT 1 cut(s) 242
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 1 cut(s) 472
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 5 cut(s) 530, 551, 593, 764, 769
MfeI CAATTG 1 cut(s) 489
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 9 cut(s) 102, 265, 295, 489, 510, 529, 655, 713, 752
Mph1103I ATGCAT 1 cut(s) 464
MroI TCCGGA 1 cut(s) 790
MroXI GAANNNNTTC 1 cut(s) 442
MseI TTAA 4 cut(s) 140, 233, 513, 654
MslI CAYNNNNRTG 2 cut(s) 140, 155
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 1 cut(s) 791
MspR9I CCNGG 2 cut(s) 48, 244
MunI CAATTG 1 cut(s) 489
MvaI CCWGG 2 cut(s) 48, 244
NdeII GATC 1 cut(s) 88
NlaIII CATG 6 cut(s) 44, 230, 334, 371, 386, 746
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 472
NsiI ATGCAT 1 cut(s) 464
NspI RCATGY 2 cut(s) 386, 746
PaeI GCATGC 1 cut(s) 746
PagI TCATGA 1 cut(s) 367
PdmI GAANNNNTTC 1 cut(s) 442
PfeI GAWTC 3 cut(s) 438, 769, 787
PflFI GACNNNGTC 1 cut(s) 407
PfoI TCCNGGA 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 46, 242
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 2 cut(s) 46, 242
PspN4I GGNNCC 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 1 cut(s) 731
RsaNI GTAC 1 cut(s) 730
RseI CAYNNNNRTG 2 cut(s) 140, 155
SaqAI TTAA 4 cut(s) 140, 233, 513, 654
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 48, 244
SduI GDGCHC 1 cut(s) 9
SetI ASST 9 cut(s) 150, 226, 248, 260, 470, 654, 672, 681, 731
SexAI ACCWGGT 1 cut(s) 242
SfaNI GCATC 3 cut(s) 144, 167, 333
SfcI CTRYAG 1 cut(s) 576
SmiMI CAYNNNNRTG 2 cut(s) 140, 155
SphI GCATGC 1 cut(s) 746
Sse9I AATT 9 cut(s) 102, 265, 295, 489, 510, 529, 655, 713, 752
SsiI CCGC 2 cut(s) 549, 782
SspI AATATT 3 cut(s) 364, 635, 861
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 2 cut(s) 46, 242
TaaI ACNGT 2 cut(s) 131, 841
TaiI ACGT 1 cut(s) 470
TaqI TCGA 3 cut(s) 75, 248, 341
TasI AATT 9 cut(s) 102, 265, 295, 489, 510, 529, 655, 713, 752
TfiI GAWTC 3 cut(s) 438, 769, 787
Tru1I TTAA 4 cut(s) 140, 233, 513, 654
Tru9I TTAA 4 cut(s) 140, 233, 513, 654
TscAI CASTG 4 cut(s) 136, 171, 838, 846
TseFI GTSAC 1 cut(s) 472
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 8 cut(s) 114, 158, 278, 319, 356, 522, 726, 764
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 4 cut(s) 136, 171, 838, 846
Tth111I GACNNNGTC 1 cut(s) 407
XceI RCATGY 2 cut(s) 386, 746
XcmI CCANNNNNNNNNTGG 3 cut(s) 16, 625, 838
XmnI GAANNNNTTC 1 cut(s) 442
XspI CTAG 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.