Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002119

Physical Location & Seq

Genomic Coordinates Reverse (-)

73568436 .. 73570791

Gene Structure 2356 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGCTGAGTCCGATGAAATGCAAGCGCATTGGAATTTCTTCCGTCGCGAAATTACGCAACGTTGAGGTCGAATCGGAGAGGAGCGTGGAGGAGGTAGTCGGATCCGGCGGTGATTTGACTCCTCAGAAGCGGAAGTCGAGGTCCGATTCGTCGTCGCCGATGAAGTGTAAATCGGCTCGCCGGAACCTCAGTGCTTGCAGCAGCACTCCTGCAAATGTGAGATTTGGATTGGATAATAAGGAGCAGATGAGGATAGTGAAGGAGGCATTGCACTTGTCAACGGTCCCCTCTACTGTTGCGTGCCGCGATGTGGAGCATAAGAGGGTTCTGGAGTTCTGCAAGTCATGCATAGAGCAAGAGAAGGCCGGGAGTTTATATGTATGCGGGTGTCCTGGGACCGGAAAGTCCTTGTCCATGGAGAAAGTGAAACAGCTTTTGGTGAATTGGGCAGGAGAGGGTGGATTTCAGGAACCGGATGTGTTGGAATTGAACTGTACATCGCTAACAAAAACTTCTGATATTTTCGCTAAGATACTTGGTAAATACCAACCTCAAAAGAAAGCTAATGGCACTACCTCCCTGCAACTTCTTCAGAAATTATATTCTCAAAAGCCTCAGTCAGATGGGACTAAGATGATGTTGATAATAACTGATGAGTTGGATTACTTAATCACTAAAGACCGGGCAGTGCTCCATGACCTTTTCATGCTCACAACATACCCATTCTCAAGATGTATACTTTTAGGAGTAGCAAATGCAATCGATTTAGCTGATCGTTTTGTTCCAAAACTTCAGTCATTAAATTGTAAGCCTATGGTTATAACTTTTCGGGCATACTCTAAGGATCAGATTCTCAAGATTCTCCAAGAGAGGCTTATGGCACTGCCTTACACTGTTTTTCAACCACATGCATTGGAACTTTGTGCCAGAAAAGTTGCTGCTGCATCTGGAGATATGAGGAAAGCTCTCTATATTTCCAGGTTAGTGAAAGCTCAGGCATTCAAAAGCATCTTACTGAACATCATTTATTTAACTTCTGGAACATCTTACAGAAGCATTAAAAGCAAAATATTGGAATATATAGCTTACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006725 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0022402 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044786 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 map04110 map04111 map04113

Pfam Domains

Protein Families

AAA_22 Cdc6_C

Protein Analysis

365

Amino Acids

40.68

Weight (kDa)

9.48

Isoelectric Point (pI)

47.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	122 - 239	1.1e-12	AAA domain
Cdc6-ORC-like_ATPase_lid	PF22606	280 - 327	1.2e-06	Cdc6/ORC-like, ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07270 AT1G07270 AT2G29680 AT2G29680
fragaria_vesca	FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340 FvH4_3g38340
malus_domestica	MD03G1072700.v1.1 MD11G1078800.v1.1
prunus_persica	Prupe.6G059500_v2.0.a1
pyrus_communis	pycom03g05890 pycom11g06590
rosa_chinensis	RchiOBHm_Chr2g0157131 RchiOBHm_Chr4g0399271 RchiOBHm_Chr5g0068951
rosa_laevigata	RLG00000020961 RLG00000036023
rosa_multiflora	Rmu_sc0001960.1_g000002 Rmu_sc0003822.1_g000023 Rmu_sc0010302.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011800 Rroxscaffold_1G00029470 Rroxscaffold_2G00092520
rosa_rugosa	Rorug01G0058900 Rorug01G0059000 Rorug01G0059100 Rorug01G0059200 Rorug05G0394800 Rorug07G0214100 Rorug07G0214200 Rorug07G0214300
rosa_samantha	Rh2BG537600 Rh2DG546400 Rh4AG092800 Rh4CG101200 Rh5BG470900 Rh5CG493400 Rh7BG347600
rosa_wichuraiana	Rw2G031040 Rw2G043260 Rw4G007640 Rw5G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	824
AasI	GACNNNNNNGTC	1 cut(s)	406
AccI	GTMKAC	1 cut(s)	739
AccII	CGCG	2 cut(s)	50, 309
AciI	CCGC	4 cut(s)	111, 133, 307, 387
AclI	AACGTT	1 cut(s)	63
AclWI	GGATC	3 cut(s)	99, 112, 855
AcsI	RAATTY	1 cut(s)	36
AcuI	CTGAAG	2 cut(s)	578, 779
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	2 cut(s)	313, 401
AgsI	TTSAA	3 cut(s)	493, 905, 1006
AjnI	CCWGG	2 cut(s)	394, 980
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	7 cut(s)	7, 436, 566, 773, 968, 995, 1088
AluI	AGCT	7 cut(s)	7, 436, 566, 773, 968, 995, 1088
Alw21I	GWGCWC	1 cut(s)	696
AlwI	GGATC	3 cut(s)	99, 112, 855
AoxI	GGCC	1 cut(s)	366
ApeKI	GCWGC	4 cut(s)	201, 204, 941, 944
ApoI	RAATTY	1 cut(s)	36
ArsI	GACNNNNNNTTYG	2 cut(s)	782, 814
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	144, 286, 399
AsuC2I	CCSGG	2 cut(s)	370, 686
AsuHPI	GGTGA	2 cut(s)	125, 454
AvaII	GGWCC	3 cut(s)	144, 286, 399
BamHI	GGATCC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	4 cut(s)	213, 216, 928, 931
BccI	CCATC	1 cut(s)	620
BciT130I	CCWGG	2 cut(s)	396, 982
BcnI	CCSGG	2 cut(s)	370, 686
BisI	GCNGC	5 cut(s)	202, 205, 307, 942, 945
BlsI	GCNGC	5 cut(s)	203, 206, 308, 943, 946
Bme1390I	CCNGG	4 cut(s)	370, 396, 686, 982
Bme18I	GGWCC	3 cut(s)	144, 286, 399
BmgT120I	GGNCC	3 cut(s)	144, 286, 399
BmiI	GGNNCC	5 cut(s)	106, 188, 288, 400, 474
BmrFI	CCNGG	4 cut(s)	370, 396, 686, 982
BmsI	GCATC	2 cut(s)	956, 1020
BplI	GAGNNNNNCTC	2 cut(s)	952, 984
BpmI	CTGGAG	2 cut(s)	353, 972
Bpu10I	CCTNAGC	1 cut(s)	996
BpuEI	CTTGAG	2 cut(s)	715, 842
BpuMI	CCSGG	2 cut(s)	370, 686
Bsa29I	ATCGAT	1 cut(s)	765
BsaJI	CCNNGG	2 cut(s)	395, 417
BsaWI	WCCGGW	2 cut(s)	401, 475
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 401
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	2 cut(s)	396, 982
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	395, 417
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	2 cut(s)	313, 401
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	4 cut(s)	140, 205, 632, 1010
BseRI	GAGGAG	3 cut(s)	97, 107, 114
BseXI	GCAGC	4 cut(s)	213, 216, 928, 931
Bsh1236I	CGCG	2 cut(s)	50, 309
BshFI	GGCC	1 cut(s)	368
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	696
BsiSI	CCGG	6 cut(s)	108, 184, 369, 402, 476, 685
BslFI	GGGAC	3 cut(s)	272, 412, 643
BslI	CCNNNNNNNGG	2 cut(s)	313, 401
BsmFI	GGGAC	3 cut(s)	272, 412, 643
BsmI	GAATGC	1 cut(s)	1001
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	696
Bsp1407I	TGTACA	1 cut(s)	497
Bsp143I	GATC	3 cut(s)	104, 775, 847
Bsp19I	CCATGG	1 cut(s)	417
Bsp68I	TCGCGA	1 cut(s)	50
BspACI	CCGC	4 cut(s)	111, 133, 307, 387
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	4 cut(s)	139, 204, 631, 1009
BspDI	ATCGAT	1 cut(s)	765
BspFNI	CGCG	2 cut(s)	50, 309
BspLI	GGNNCC	5 cut(s)	106, 188, 288, 400, 474
BspPI	GGATC	3 cut(s)	99, 112, 855
BsrDI	GCAATG	1 cut(s)	269
BsrGI	TGTACA	1 cut(s)	497
BssECI	CCNNGG	2 cut(s)	395, 417
BssMI	GATC	3 cut(s)	104, 775, 847
BssNAI	GTATAC	1 cut(s)	740
BssT1I	CCWWGG	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	740
Bst2UI	CCWGG	2 cut(s)	396, 982
Bst4CI	ACNGT	4 cut(s)	286, 298, 497, 898
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	26, 181, 199, 304
BstDEI	CTNAG	8 cut(s)	8, 126, 191, 531, 618, 633, 843, 996
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	2 cut(s)	50, 309
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	3 cut(s)	107, 778, 850
BstMBI	GATC	3 cut(s)	104, 775, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 1065
BstNI	CCWGG	2 cut(s)	396, 982
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	4 cut(s)	368, 394, 684, 980
BstUI	CGCG	2 cut(s)	50, 309
BstV1I	GCAGC	4 cut(s)	213, 216, 928, 931
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BstZ17I	GTATAC	1 cut(s)	740
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	1 cut(s)	368
BsuTUI	ATCGAT	1 cut(s)	765
BtgI	CCRYGG	1 cut(s)	417
BtgZI	GCGATG	2 cut(s)	324, 486
BtsCI	GGATG	1 cut(s)	484
BtsI	GCAGTG	2 cut(s)	696, 884
BtsIMutI	CAGTG	4 cut(s)	199, 696, 884, 894
BtuMI	TCGCGA	1 cut(s)	50
Cac8I	GCNNGC	4 cut(s)	26, 181, 199, 304
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	144, 286, 399
ClaI	ATCGAT	1 cut(s)	765
Csp6I	GTAC	1 cut(s)	498
CspCI	CAANNNNNGTGG	2 cut(s)	897, 932
CviAII	CATG	5 cut(s)	348, 418, 698, 709, 911
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	8 cut(s)	8, 126, 191, 531, 618, 633, 843, 996
DpnI	GATC	3 cut(s)	106, 777, 849
DpnII	GATC	3 cut(s)	104, 775, 847
DrdI	GACNNNNNNGTC	1 cut(s)	406
DseDI	GACNNNNNNGTC	1 cut(s)	406
Eco130I	CCWWGG	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	144, 286, 399
Eco57I	CTGAAG	2 cut(s)	578, 779
EcoRII	CCWGG	2 cut(s)	394, 980
EcoT14I	CCWWGG	1 cut(s)	417
EcoT22I	ATGCAT	2 cut(s)	353, 916
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	5 cut(s)	351, 421, 701, 712, 914
FalI	AAGNNNNNCTT	2 cut(s)	861, 893
FaqI	GGGAC	3 cut(s)	272, 412, 643
FatI	CATG	5 cut(s)	347, 417, 697, 708, 910
FauI	CCCGC	1 cut(s)	380
FblI	GTMKAC	1 cut(s)	739
Fnu4HI	GCNGC	5 cut(s)	202, 205, 307, 942, 945
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	5 cut(s)	202, 205, 307, 942, 945
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	5 cut(s)	202, 205, 307, 942, 945
GsuI	CTGGAG	2 cut(s)	353, 972
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	6 cut(s)	108, 184, 369, 402, 476, 685
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	351, 421, 701, 712, 914
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HinfI	GANTC	6 cut(s)	10, 74, 121, 149, 853, 862
HpaII	CCGG	6 cut(s)	108, 184, 369, 402, 476, 685
HphI	GGTGA	2 cut(s)	125, 454
Hpy166II	GTNNAC	2 cut(s)	282, 740
Hpy188I	TCNGA	9 cut(s)	15, 79, 104, 129, 148, 520, 597, 625, 852
Hpy188III	TCNNGA	7 cut(s)	49, 332, 470, 732, 859, 951, 1041
Hpy8I	GTNNAC	2 cut(s)	282, 740
Hpy99I	CGWCG	3 cut(s)	50, 157, 160
HpyAV	CCTTC	2 cut(s)	256, 358
HpyCH4III	ACNGT	4 cut(s)	286, 298, 497, 898
HpyCH4IV	ACGT	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 1065
HpyF3I	CTNAG	8 cut(s)	8, 126, 191, 531, 618, 633, 843, 996
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	351, 421, 701, 712, 914
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	3 cut(s)	104, 775, 847
LmnI	GCTCC	4 cut(s)	84, 244, 316, 699
Lsp1109I	GCAGC	4 cut(s)	213, 216, 928, 931
LweI	GCATC	2 cut(s)	956, 1020
MaeII	ACGT	1 cut(s)	63
MalI	GATC	3 cut(s)	106, 777, 849
MboI	GATC	3 cut(s)	104, 775, 847
MboII	GAAGA	2 cut(s)	33, 584
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	1 cut(s)	696
MluCI	AATT	6 cut(s)	36, 53, 445, 488, 599, 805
MlyI	GAGTC	2 cut(s)	19, 115
MmeI	TCCRAC	3 cut(s)	82, 465, 642
Mph1103I	ATGCAT	2 cut(s)	353, 916
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	5 cut(s)	671, 803, 1034, 1062, 1096
MspI	CCGG	6 cut(s)	108, 184, 369, 402, 476, 685
MspR9I	CCNGG	4 cut(s)	370, 396, 686, 982
Mva1269I	GAATGC	1 cut(s)	1001
MvaI	CCWGG	2 cut(s)	396, 982
MvnI	CGCG	2 cut(s)	50, 309
MwoI	GCNNNNNNNGC	2 cut(s)	348, 1065
NciI	CCSGG	2 cut(s)	370, 686
NcoI	CCATGG	1 cut(s)	417
NdeII	GATC	3 cut(s)	104, 775, 847
NlaIII	CATG	5 cut(s)	351, 421, 701, 712, 914
NlaIV	GGNNCC	5 cut(s)	106, 188, 288, 400, 474
NruI	TCGCGA	1 cut(s)	50
NsiI	ATGCAT	2 cut(s)	353, 916
NspI	RCATGY	1 cut(s)	914
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 158
PctI	GAATGC	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	4 cut(s)	74, 149, 853, 862
PkrI	GCNGC	5 cut(s)	203, 206, 308, 943, 946
PleI	GAGTC	2 cut(s)	18, 115
PpsI	GAGTC	2 cut(s)	18, 115
PsiI	TTATAA	1 cut(s)	824
Psp1406I	AACGTT	1 cut(s)	63
Psp6I	CCWGG	2 cut(s)	394, 980
PspGI	CCWGG	2 cut(s)	394, 980
PspN4I	GGNNCC	5 cut(s)	106, 188, 288, 400, 474
PspPI	GGNCC	3 cut(s)	144, 286, 399
PsuI	RGATCY	1 cut(s)	104
RruI	TCGCGA	1 cut(s)	50
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
SaqAI	TTAA	5 cut(s)	671, 803, 1034, 1062, 1096
SatI	GCNGC	5 cut(s)	202, 205, 307, 942, 945
Sau3AI	GATC	3 cut(s)	104, 775, 847
Sau96I	GGNCC	3 cut(s)	144, 286, 399
SchI	GAGTC	2 cut(s)	19, 115
ScrFI	CCNGG	4 cut(s)	370, 396, 686, 982
SduI	GDGCHC	1 cut(s)	696
SfaNI	GCATC	2 cut(s)	956, 1020
SinI	GGWCC	3 cut(s)	144, 286, 399
SmlI	CTYRAG	2 cut(s)	730, 857
SmoI	CTYRAG	2 cut(s)	730, 857
Sse9I	AATT	6 cut(s)	36, 53, 445, 488, 599, 805
SsiI	CCGC	4 cut(s)	111, 133, 307, 387
SspI	AATATT	1 cut(s)	1074
StyD4I	CCNGG	4 cut(s)	368, 394, 684, 980
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	4 cut(s)	286, 298, 497, 898
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	3 cut(s)	72, 140, 765
TasI	AATT	6 cut(s)	36, 53, 445, 488, 599, 805
TatI	WGTACW	1 cut(s)	497
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	4 cut(s)	74, 149, 853, 862
Tru1I	TTAA	5 cut(s)	671, 803, 1034, 1062, 1096
Tru9I	TTAA	5 cut(s)	671, 803, 1034, 1062, 1096
TscAI	CASTG	4 cut(s)	199, 696, 891, 901
TseI	GCWGC	4 cut(s)	201, 204, 941, 944
TspDTI	ATGAA	4 cut(s)	17, 32, 179, 697
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	4 cut(s)	199, 696, 891, 901
VpaK11BI	GGWCC	3 cut(s)	144, 286, 399
XapI	RAATTY	1 cut(s)	36
XceI	RCATGY	1 cut(s)	914
XmiI	GTMKAC	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	40
Zsp2I	ATGCAT	2 cut(s)	353, 916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.