Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

75624533 .. 75626841

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCTGGTTGTTGACATGAAGAAATTCGCCTCACCGCAGCAAGAGAGTTGGTTCTCTGTGAATGAAAAAGAATCTCTTGGACATGTCAAAGTAGAAGTTATTGAAGCATCTGACATCAAAGCTGCAGATCTAAATGGATTATCTGACCCTTATGTTAAGGGTCAATTGGGCCTTTACTGGTTCAGGATGAAGACACAAAAGAAAACACTGGCTCCAAAATGGCATGAAGAATTCAAGATGCCTATTATTACATGGGATTCATCTACTGTGCTATCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

93

Amino Acids

10.69

Weight (kDa)

6.72

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	27 - 92	7.3e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	23, 230
AflIII	ACRYGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	104, 235
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	37, 122
ApoI	RAATTY	2 cut(s)	23, 230
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	49, 109
BfmI	CTRYAG	1 cut(s)	123
BglII	AGATCT	1 cut(s)	127
BisI	GCNGC	2 cut(s)	38, 123
BlsI	GCNGC	2 cut(s)	39, 124
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	213
BmsI	GCATC	2 cut(s)	116, 228
BpiI	GAAGAC	1 cut(s)	197
BsaXI	ACNNNNNCTCC	2 cut(s)	196, 226
Bse1I	ACTGG	2 cut(s)	182, 213
BseGI	GGATG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	182, 213
BseXI	GCAGC	2 cut(s)	49, 109
BshFI	GGCC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	127
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	213
BspMAI	CTGCAG	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	182, 213
BssMI	GATC	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	49, 109
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	169
CviAII	CATG	4 cut(s)	16, 83, 224, 252
CviJI	RGCY	3 cut(s)	122, 171, 212
CviKI_1	RGCY	3 cut(s)	122, 171, 212
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EcoRI	GAATTC	1 cut(s)	230
FaeI	CATG	4 cut(s)	19, 86, 227, 255
FaiI	YATR	5 cut(s)	17, 84, 153, 225, 253
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	4 cut(s)	15, 82, 223, 251
Fnu4HI	GCNGC	2 cut(s)	38, 123
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	2 cut(s)	38, 123
GluI	GCNGC	2 cut(s)	38, 123
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	4 cut(s)	19, 86, 227, 255
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	2 cut(s)	71, 257
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	112, 145
Hpy188III	TCNNGA	2 cut(s)	184, 235
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	1 cut(s)	125
Hsp92II	CATG	4 cut(s)	19, 86, 227, 255
Kzo9I	GATC	1 cut(s)	127
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	3 cut(s)	163, 169, 194
Lsp1109I	GCAGC	2 cut(s)	49, 109
LweI	GCATC	2 cut(s)	116, 228
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MboII	GAAGA	3 cut(s)	31, 202, 239
MfeI	CAATTG	1 cut(s)	164
MflI	RGATCY	1 cut(s)	127
MluCI	AATT	4 cut(s)	23, 164, 230, 276
MnlI	CCTC	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	156
MunI	CAATTG	1 cut(s)	164
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	4 cut(s)	19, 86, 227, 255
NlaIV	GGNNCC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	86
PciI	ACATGT	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	71, 257
PkrI	GCNGC	2 cut(s)	39, 124
PscI	ACATGT	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	213
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	38, 123
Sau3AI	GATC	1 cut(s)	127
Sau96I	GGNCC	1 cut(s)	169
SetI	ASST	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	116, 228
SfcI	CTRYAG	1 cut(s)	123
Sse9I	AATT	4 cut(s)	23, 164, 230, 276
SsiI	CCGC	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	268
TasI	AATT	4 cut(s)	23, 164, 230, 276
TfiI	GAWTC	2 cut(s)	71, 257
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	213
TseI	GCWGC	2 cut(s)	37, 122
TspDTI	ATGAA	5 cut(s)	32, 78, 203, 240, 249
TspRI	CASTG	1 cut(s)	213
XapI	RAATTY	2 cut(s)	23, 230
XceI	RCATGY	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.