Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000936

Physical Location & Seq

Genomic Coordinates Reverse (-)

75626843 .. 75628714

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCTAAAGCTCGCGTCGCCGTCGACATCAACGTCCTCCTCCGCAAGGATTTTCGGGACTACGAGTCCTTCATCGTCCAATGGGTGGGATTAGACGAGAAAGGAAAAAAGAACAAGAAGAAGGAACAAGGACAACGAACAGAGGAGGAGAAAGGGAGAGAAGAAAAGAAAAGAAAAGAAGAAGATGGGAAGGGAGAAAGAGATAGAGATTTTGGGCTCGATGATGACTTGGTCTTATGGAGAGTTTCTGTTCTAAAACAGGATGATGACCACTTGGTTTTGGAGTTGGGACTGAATTTTCTAACTGCTGATGATATGATTGCAATACTCGCTGTGAAGTTGAGGAAAAGACTGGGTTTCGGGATGTGGGCAAAGTTGCATATTATAGGCATGCATGTTGAAGGGAAGCTGCTGATTGGGGTTAAGTTTCTTCGTAGGTGGCCTTTCCTTGGCCGTCTGCGGATATGCTTCATTGAGCCTCCATATTTTCAGATGACCGTCAAGCCTATTTTTACACATGGCCTTGATGTTACAGTTCTTCCAGGAATTGCTGGGTGGCTCTTAATATTTTATCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005886 GO:0012505 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

C2 SMP_LBD

Protein Analysis

193

Amino Acids

22.53

Weight (kDa)

9.23

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000936)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53590 AT3G14590 AT3G14590 AT3G14590 AT3G14590 AT3G14590
fragaria_vesca	FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g16980 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020 FvH4_3g17020
malus_domestica	MD00G1185500.v1.1 MD00G1185600.v1.1 MD03G1254200.v1.1 MD03G1254900.v1.1 MD11G1275800.v1.1 MD11G1276000.v1.1
prunus_persica	Prupe.4G152200_v2.0.a1 Prupe.4G152200_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1 Prupe.4G152300_v2.0.a1
pyrus_communis	pycom03g20170 pycom03g20190 pycom11g24400
rosa_chinensis	RchiOBHm_Chr2g0135571 RchiOBHm_Chr2g0159501 RchiOBHm_Chr2g0159511 RchiOBHm_Chr5g0028301 RchiOBHm_Chr5g0028351 RchiOBHm_Chr5g0039631
rosa_laevigata	RLG00000033080 RLG00000033088
rosa_multiflora	Rmu_sc0001020.1_g000001 Rmu_sc0002481.1_g000040 Rmu_sc0008526.1_g000010
rosa_roxburghii	Rroxscaffold_1G00051350 Rroxscaffold_1G00051420 Rroxscaffold_1G00051430
rosa_rugosa	Rorug05G0105600
rosa_samantha	Rh1AG292900 Rh4AG059100 Rh5AG199100 Rh5AG199600 Rh5BG197700 Rh5BG198100 Rh5CG217400 Rh5CG218100 Rh5DG199400 Rh5DG200000 Rh7DG370100
rosa_wichuraiana	Rw4G016870 Rw5G018160 Rw5G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccI	GTMKAC	1 cut(s)	24
AccII	CGCG	1 cut(s)	15
AciI	CCGC	2 cut(s)	43, 460
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	295
AfiI	CCNNNNNNNGG	3 cut(s)	46, 85, 449
AgsI	TTSAA	1 cut(s)	401
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	2 cut(s)	11, 409
AluI	AGCT	2 cut(s)	11, 409
AoxI	GGCC	3 cut(s)	440, 451, 520
ApeKI	GCWGC	1 cut(s)	409
ApoI	RAATTY	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	396
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	5, 438
BciT130I	CCWGG	1 cut(s)	543
BisI	GCNGC	1 cut(s)	410
BlsI	GCNGC	1 cut(s)	411
Bme1390I	CCNGG	1 cut(s)	543
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 85, 449
Bse1I	ACTGG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	2 cut(s)	268, 369
BseLI	CCNNNNNNNGG	3 cut(s)	46, 85, 449
BseNI	ACTGG	1 cut(s)	357
BseRI	GAGGAG	3 cut(s)	29, 158, 161
BseXI	GCAGC	1 cut(s)	396
BseYI	CCCAGC	1 cut(s)	551
Bsh1236I	CGCG	1 cut(s)	15
BshFI	GGCC	3 cut(s)	442, 453, 522
BslFI	GGGAC	2 cut(s)	71, 303
BslI	CCNNNNNNNGG	3 cut(s)	46, 85, 449
BsmFI	GGGAC	2 cut(s)	71, 303
BsnI	GGCC	3 cut(s)	442, 453, 522
Bsp1286I	GDGCHC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	43, 460
BspANI	GGCC	3 cut(s)	442, 453, 522
BspFNI	CGCG	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	357
BssECI	CCNNGG	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	2 cut(s)	499, 535
BstC8I	GCNNGC	2 cut(s)	13, 392
BstENI	CCTNNNNNAGG	1 cut(s)	44
BstF5I	GGATG	2 cut(s)	268, 369
BstFNI	CGCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 329
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	394, 398
BstSCI	CCNGG	1 cut(s)	541
BstUI	CGCG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	396
BsuRI	GGCC	3 cut(s)	442, 453, 522
BtsCI	GGATG	2 cut(s)	268, 369
Cac8I	GCNNGC	2 cut(s)	13, 392
CseI	GACGC	1 cut(s)	4
CviAII	CATG	4 cut(s)	391, 395, 518, 575
CviJI	RGCY	9 cut(s)	11, 217, 409, 442, 453, 478, 505, 522, 559
CviKI_1	RGCY	9 cut(s)	11, 217, 409, 442, 453, 478, 505, 522, 559
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	64
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	448
Eco24I	GRGCYC	1 cut(s)	219
EcoNI	CCTNNNNNAGG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	541
EcoT14I	CCWWGG	1 cut(s)	448
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	448
FaeI	CATG	4 cut(s)	394, 398, 521, 578
FaqI	GGGAC	2 cut(s)	71, 303
FatI	CATG	4 cut(s)	390, 394, 517, 574
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	1 cut(s)	410
FokI	GGATG	2 cut(s)	275, 376
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	410
GsaI	CCCAGC	1 cut(s)	555
HaeIII	GGCC	3 cut(s)	442, 453, 522
HgaI	GACGC	1 cut(s)	4
Hin1II	CATG	4 cut(s)	394, 398, 521, 578
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	65
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	2 cut(s)	56, 361
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	2 cut(s)	20, 26
HpyAV	CCTTC	4 cut(s)	79, 115, 184, 395
HpyCH4III	ACNGT	2 cut(s)	499, 535
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	3 cut(s)	323, 379, 394
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 329
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	394, 398, 521, 578
LpnPI	CCDG	5 cut(s)	245, 338, 528, 537, 555
Lsp1109I	GCAGC	1 cut(s)	396
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	1 cut(s)	529
MboII	GAAGA	6 cut(s)	130, 173, 191, 194, 422, 530
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	295, 546
MlyI	GAGTC	1 cut(s)	74
MnlI	CCTC	6 cut(s)	47, 50, 136, 139, 336, 489
Mph1103I	ATGCAT	1 cut(s)	396
MseI	TTAA	2 cut(s)	423, 563
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	15
MwoI	GCNNNNNNNGC	2 cut(s)	17, 329
NlaIII	CATG	4 cut(s)	394, 398, 521, 578
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	2 cut(s)	394, 398
PaeI	GCATGC	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PflFI	GACNNNGTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	85
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	411
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	541
PsyI	GACNNNGTC	1 cut(s)	230
SalI	GTCGAC	1 cut(s)	23
SaqAI	TTAA	2 cut(s)	423, 563
SatI	GCNGC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	13, 36, 411, 440
SphI	GCATGC	1 cut(s)	394
Sse9I	AATT	2 cut(s)	295, 546
SsiI	CCGC	2 cut(s)	43, 460
SspI	AATATT	1 cut(s)	567
StyD4I	CCNGG	1 cut(s)	541
StyI	CCWWGG	1 cut(s)	448
TaaI	ACNGT	2 cut(s)	499, 535
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	24, 219
TasI	AATT	2 cut(s)	295, 546
Tru1I	TTAA	2 cut(s)	423, 563
Tru9I	TTAA	2 cut(s)	423, 563
TseI	GCWGC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	61, 460
Tth111I	GACNNNGTC	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	85
XagI	CCTNNNNNAGG	1 cut(s)	44
XapI	RAATTY	1 cut(s)	295
XceI	RCATGY	2 cut(s)	394, 398
XmiI	GTMKAC	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.