RchiOBHm_Chr2g0175501

Sulfite oxidase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
87686216 .. 87690842
4627 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1182 bp
ATGCCCGGCGTCACTGGTCCTTCAGATTACTCGCGGGAGCCGCCTCGACATCCGAGCCTCAAAATCAATGCCAAGGAGCCTTTCAATGCCGAGCCACCGCGCTCAGCTCTCGGCGCCGCTTACGTCACTCCGGTGGAGTTCTTCTACAAGAGAAACCACGGTCCTATTCCAGTAGTCGATGACGTCCACAGCTACTCTGTTTCCATAACCGGATTGATCGAAAATCCGAAGCAGCTGTTTTTGAATGATATCAGGGCGCTTCCAAAGTATAATGTCACTGCTACATTGCAGTGTGCAGGTAATAGGAGGACAGCTATGAGCCAAACTCGGACTGTTAAGGGAGTAGGGTGGGATGTTTCTGCGATAGGAAATGCTGTATGGGGTGGTGCGAAATTGGCTGATGTGCTTGAACTTGTGGGAATATCAAAGTTGACAGGTGCAACTAAATCTGGTGGAAAACATGTCGAGTTTGTAAGCGTTGATAGGTGTAAGGAGGAGAATGGAGGCCCCTACAAGGCATCAATTCCATTGATTCAGGCCACAAGCCCAGAAGCAGACGTTTTACTTGCTTATGAGATGAATGGAGAGACCCTAAACAGGGATCATGGGTATCCATTGCGTGTAGTTGTACCTGGTGTTATAGGTGCCCGTTCTGTTAAATGGCTTGATTCTATTAATGTCATTGCAGAGGAATGTCAGGGCTTCTTTATGCAAAAGGACTACAAAATGTTTCCACCTTCAGTAAACTGGGATAACATTAATTGGTCCACCAGGAGGCCACAAATGGATTTTCCTGTCCAGTGTGTAATTTGTTCTTTAGAGGATGTGAATGCAATAAAGCCTGGAAAGGTAAAAGTCAGTGGTTATGCAGCATCAGGAGGTGGTCGTGGCATTGAGAGAGTTGATGTGTCTGTTGATGGTGGCAATACCTGGGTAGAAGCATCTAGACATCAGAAAACTGGCATCCCATATATTGCAGAGGCCACATGCAGTGATAAATGGGCATGGGTACTTTTTGAGGCCTTGGTTGATGTCCAACAGAGCACTCAAATTGTTGCAAAAGCAGTGGATTCAGCAGCAAATGTACAACCTGAAAAAGTGGAGGACATTTGGAACTTGAGAGGGATACTGAACACTTCATGGCATAGAGTACAAGTTCGAGTTGGCCACTCAAATTTGTAG

Protein Analysis

393

Amino Acids

42.98

Weight (kDa)

7.63

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_molyb PF00174 53 - 235 8.9e-57 Oxidoreductase molybdopterin binding domain
Mo-co_dimer PF03404 260 - 388 3.2e-37 Mo-co oxidoreductase dimerisation domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
Acc36I ACCTGC 1 cut(s) 287
AccB1I GGYRCC 2 cut(s) 113, 644
AccII CGCG 2 cut(s) 34, 100
AciI CCGC 4 cut(s) 34, 41, 98, 117
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 1165
AcsI RAATTY 1 cut(s) 1174
AcuI CTGAAG 2 cut(s) 6, 723
AcyI GRCGYC 3 cut(s) 9, 114, 183
AfaI GTAC 4 cut(s) 630, 1011, 1086, 1152
AfiI CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
AflIII ACRYGT 1 cut(s) 460
AgsI TTSAA 3 cut(s) 85, 244, 410
AjnI CCWGG 4 cut(s) 631, 770, 841, 929
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AleI CACNNNNGTG 1 cut(s) 131
AluBI AGCT 4 cut(s) 107, 192, 235, 314
AluI AGCT 4 cut(s) 107, 192, 235, 314
Alw21I GWGCWC 1 cut(s) 1046
Alw26I GTCTC 1 cut(s) 581
AlwI GGATC 1 cut(s) 609
AoxI GGCC 6 cut(s) 505, 537, 776, 981, 1020, 1165
ApeKI GCWGC 3 cut(s) 232, 869, 1076
ApoI RAATTY 1 cut(s) 1174
AseI ATTAAT 2 cut(s) 675, 759
AspLEI GCGC 3 cut(s) 102, 116, 259
AspS9I GGNCC 4 cut(s) 17, 161, 506, 765
AsuC2I CCSGG 1 cut(s) 6
AvaII GGWCC 3 cut(s) 17, 161, 765
BaeGI GKGCMC 1 cut(s) 649
BalI TGGCCA 1 cut(s) 1167
BanI GGYRCC 2 cut(s) 113, 644
Bbv12I GWGCWC 1 cut(s) 1046
BbvI GCAGC 3 cut(s) 244, 881, 1088
BccI CCATC 1 cut(s) 911
BciT130I CCWGG 4 cut(s) 633, 772, 843, 931
BciVI GTATCC 2 cut(s) 621, 1119
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 581
BfaI CTAG 1 cut(s) 945
BfoI RGCGCY 2 cut(s) 117, 260
BfuAI ACCTGC 1 cut(s) 287
BfuI GTATCC 2 cut(s) 621, 1119
BisI GCNGC 5 cut(s) 41, 117, 233, 870, 1077
BlpI GCTNAGC 1 cut(s) 103
BlsI GCNGC 5 cut(s) 42, 118, 234, 871, 1078
Bme1390I CCNGG 5 cut(s) 6, 633, 772, 843, 931
Bme18I GGWCC 3 cut(s) 17, 161, 765
BmgT120I GGNCC 4 cut(s) 17, 161, 506, 765
BmiI GGNNCC 5 cut(s) 39, 78, 115, 508, 646
BmrFI CCNGG 5 cut(s) 6, 633, 772, 843, 931
BmrI ACTGGG 1 cut(s) 757
BmsI GCATC 4 cut(s) 527, 881, 950, 972
BmuI ACTGGG 1 cut(s) 757
BplI GAGNNNNNCTC 2 cut(s) 310, 342
Bpu1102I GCTNAGC 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 1138
BpuMI CCSGG 1 cut(s) 6
BsaHI GRCGYC 3 cut(s) 9, 114, 183
BsaI GGTCTC 1 cut(s) 581
BsaJI CCNNGG 4 cut(s) 72, 157, 930, 1023
BsaWI WCCGGW 2 cut(s) 130, 209
Bsc4I CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
Bse1I ACTGG 5 cut(s) 19, 170, 752, 799, 964
Bse3DI GCAATG 3 cut(s) 284, 614, 681
BseBI CCWGG 4 cut(s) 633, 772, 843, 931
BseDI CCNNGG 4 cut(s) 72, 157, 930, 1023
BseGI GGATG 4 cut(s) 49, 358, 829, 963
BseLI CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
BseMI GCAATG 3 cut(s) 284, 614, 681
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 5 cut(s) 19, 170, 752, 799, 964
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 649
BseXI GCAGC 3 cut(s) 244, 881, 1088
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 2 cut(s) 34, 100
BshFI GGCC 6 cut(s) 507, 539, 778, 983, 1022, 1167
BshNI GGYRCC 2 cut(s) 113, 644
BsiHKAI GWGCWC 1 cut(s) 1046
BsiSI CCGG 3 cut(s) 6, 131, 210
BslI CCNNNNNNNGG 4 cut(s) 514, 597, 598, 774
BsmAI GTCTC 1 cut(s) 581
BsmI GAATGC 1 cut(s) 835
BsnI GGCC 6 cut(s) 507, 539, 778, 983, 1022, 1167
Bso31I GGTCTC 1 cut(s) 581
Bsp1286I GDGCHC 2 cut(s) 649, 1046
Bsp1407I TGTACA 1 cut(s) 1084
Bsp143I GATC 2 cut(s) 216, 601
Bsp1720I GCTNAGC 1 cut(s) 103
BspACI CCGC 4 cut(s) 34, 41, 98, 117
BspANI GGCC 6 cut(s) 507, 539, 778, 983, 1022, 1167
BspCNI CTCAG 1 cut(s) 116
BspFNI CGCG 2 cut(s) 34, 100
BspLI GGNNCC 5 cut(s) 39, 78, 115, 508, 646
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 2 cut(s) 113, 644
BspTNI GGTCTC 1 cut(s) 581
BsrDI GCAATG 3 cut(s) 284, 614, 681
BsrGI TGTACA 1 cut(s) 1084
BsrI ACTGG 5 cut(s) 19, 170, 752, 799, 964
BssECI CCNNGG 4 cut(s) 72, 157, 930, 1023
BssMI GATC 2 cut(s) 216, 601
BssNI GRCGYC 3 cut(s) 9, 114, 183
BssT1I CCWWGG 2 cut(s) 72, 1023
Bst2UI CCWGG 4 cut(s) 633, 772, 843, 931
Bst4CI ACNGT 2 cut(s) 161, 334
BstACI GRCGYC 3 cut(s) 9, 114, 183
BstAUI TGTACA 1 cut(s) 1084
BstDEI CTNAG 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 4 cut(s) 49, 358, 829, 963
BstFNI CGCG 2 cut(s) 34, 100
BstH2I RGCGCY 2 cut(s) 117, 260
BstHHI GCGC 3 cut(s) 102, 116, 259
BstKTI GATC 2 cut(s) 219, 604
BstMAI GTCTC 1 cut(s) 581
BstMBI GATC 2 cut(s) 216, 601
BstMWI GCNNNNNNNGC 3 cut(s) 40, 113, 395
BstNI CCWGG 4 cut(s) 633, 772, 843, 931
BstNSI RCATGY 2 cut(s) 464, 990
BstSCI CCNGG 5 cut(s) 4, 631, 770, 841, 929
BstSLI GKGCMC 1 cut(s) 649
BstUI CGCG 2 cut(s) 34, 100
BstV1I GCAGC 3 cut(s) 244, 881, 1088
BsuI GTATCC 2 cut(s) 621, 1119
BsuRI GGCC 6 cut(s) 507, 539, 778, 983, 1022, 1167
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 49, 358, 829, 963
BtsI GCAGTG 4 cut(s) 276, 296, 997, 1071
BtsIMutI CAGTG 7 cut(s) 12, 276, 296, 806, 865, 997, 1071
BveI ACCTGC 1 cut(s) 287
CfoI GCGC 3 cut(s) 102, 116, 259
Cfr13I GGNCC 4 cut(s) 17, 161, 506, 765
CsiI ACCWGGT 1 cut(s) 631
Csp6I GTAC 4 cut(s) 629, 1010, 1085, 1151
CspCI CAANNNNNGTGG 2 cut(s) 1047, 1082
CviAII CATG 5 cut(s) 461, 605, 987, 1005, 1140
CviQI GTAC 4 cut(s) 629, 1010, 1085, 1151
DdeI CTNAG 1 cut(s) 103
DinI GGCGCC 1 cut(s) 115
DpnI GATC 2 cut(s) 218, 603
DpnII GATC 2 cut(s) 216, 601
EaeI YGGCCR 1 cut(s) 1165
Eco130I CCWWGG 2 cut(s) 72, 1023
Eco147I AGGCCT 1 cut(s) 1022
Eco31I GGTCTC 1 cut(s) 581
Eco32I GATATC 1 cut(s) 250
Eco47I GGWCC 3 cut(s) 17, 161, 765
Eco57I CTGAAG 2 cut(s) 6, 723
EcoO109I RGGNCCY 1 cut(s) 506
EcoRII CCWGG 4 cut(s) 631, 770, 841, 929
EcoRV GATATC 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 72, 1023
EgeI GGCGCC 1 cut(s) 115
EheI GGCGCC 1 cut(s) 115
ErhI CCWWGG 2 cut(s) 72, 1023
FaeI CATG 5 cut(s) 464, 608, 990, 1008, 1143
FatI CATG 5 cut(s) 460, 604, 986, 1004, 1139
FauI CCCGC 1 cut(s) 27
Fnu4HI GCNGC 5 cut(s) 41, 117, 233, 870, 1077
FokI GGATG 4 cut(s) 36, 365, 836, 950
Fsp4HI GCNGC 5 cut(s) 41, 117, 233, 870, 1077
FspBI CTAG 1 cut(s) 945
GlaI GCGC 3 cut(s) 101, 115, 258
GluI GCNGC 5 cut(s) 41, 117, 233, 870, 1077
HaeII RGCGCY 2 cut(s) 117, 260
HaeIII GGCC 6 cut(s) 507, 539, 778, 983, 1022, 1167
HapII CCGG 3 cut(s) 6, 131, 210
HhaI GCGC 3 cut(s) 102, 116, 259
Hin1I GRCGYC 3 cut(s) 9, 114, 183
Hin1II CATG 5 cut(s) 464, 608, 990, 1008, 1143
Hin6I GCGC 3 cut(s) 100, 114, 257
HinP1I GCGC 3 cut(s) 100, 114, 257
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 3 cut(s) 532, 668, 1070
HpaII CCGG 3 cut(s) 6, 131, 210
Hpy166II GTNNAC 4 cut(s) 187, 432, 745, 768
Hpy188I TCNGA 5 cut(s) 25, 54, 228, 330, 954
Hpy188III TCNNGA 2 cut(s) 876, 945
Hpy8I GTNNAC 4 cut(s) 187, 432, 745, 768
HpyAV CCTTC 2 cut(s) 30, 747
HpyCH4III ACNGT 2 cut(s) 161, 334
HpyCH4IV ACGT 3 cut(s) 123, 183, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 113, 395
HpyF3I CTNAG 1 cut(s) 103
HpySE526I ACGT 3 cut(s) 123, 183, 558
Hsp92I GRCGYC 3 cut(s) 9, 114, 183
Hsp92II CATG 5 cut(s) 464, 608, 990, 1008, 1143
HspAI GCGC 3 cut(s) 100, 114, 257
KasI GGCGCC 1 cut(s) 113
Kzo9I GATC 2 cut(s) 216, 601
LmnI GCTCC 2 cut(s) 37, 76
Lsp1109I GCAGC 3 cut(s) 244, 881, 1088
LweI GCATC 4 cut(s) 527, 881, 950, 972
MabI ACCWGGT 1 cut(s) 631
MaeI CTAG 1 cut(s) 945
MaeII ACGT 3 cut(s) 123, 183, 558
MaeIII GTNAC 3 cut(s) 10, 124, 274
MalI GATC 2 cut(s) 218, 603
MboI GATC 2 cut(s) 216, 601
MboII GAAGA 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 649, 1046
MlsI TGGCCA 1 cut(s) 1167
MluCI AATT 6 cut(s) 392, 522, 760, 807, 1050, 1174
MluNI TGGCCA 1 cut(s) 1167
Mly113I GGCGCC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 1060
Mox20I TGGCCA 1 cut(s) 1167
MscI TGGCCA 1 cut(s) 1167
MseI TTAA 4 cut(s) 336, 657, 675, 759
MslI CAYNNNNRTG 2 cut(s) 131, 289
Msp20I TGGCCA 1 cut(s) 1167
MspA1I CMGCKG 1 cut(s) 235
MspI CCGG 3 cut(s) 6, 131, 210
MspR9I CCNGG 5 cut(s) 6, 633, 772, 843, 931
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 4 cut(s) 633, 772, 843, 931
MvnI CGCG 2 cut(s) 34, 100
MwoI GCNNNNNNNGC 3 cut(s) 40, 113, 395
NarI GGCGCC 1 cut(s) 114
NciI CCSGG 1 cut(s) 6
NdeII GATC 2 cut(s) 216, 601
NlaIII CATG 5 cut(s) 464, 608, 990, 1008, 1143
NlaIV GGNNCC 5 cut(s) 39, 78, 115, 508, 646
NmeAIII GCCGAG 2 cut(s) 90, 115
NmuCI GTSAC 3 cut(s) 10, 124, 274
NspI RCATGY 2 cut(s) 464, 990
OliI CACNNNNGTG 1 cut(s) 131
PceI AGGCCT 1 cut(s) 1022
PciI ACATGT 1 cut(s) 460
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 3 cut(s) 532, 668, 1070
PkrI GCNGC 5 cut(s) 42, 118, 234, 871, 1078
PluTI GGCGCC 1 cut(s) 117
PscI ACATGT 1 cut(s) 460
PshBI ATTAAT 2 cut(s) 675, 759
Psp6I CCWGG 4 cut(s) 631, 770, 841, 929
PspGI CCWGG 4 cut(s) 631, 770, 841, 929
PspN4I GGNNCC 5 cut(s) 39, 78, 115, 508, 646
PspPI GGNCC 4 cut(s) 17, 161, 506, 765
PvuII CAGCTG 1 cut(s) 235
RsaI GTAC 4 cut(s) 630, 1011, 1086, 1152
RsaNI GTAC 4 cut(s) 629, 1010, 1085, 1151
RseI CAYNNNNRTG 2 cut(s) 131, 289
SaqAI TTAA 4 cut(s) 336, 657, 675, 759
SatI GCNGC 5 cut(s) 41, 117, 233, 870, 1077
Sau3AI GATC 2 cut(s) 216, 601
Sau96I GGNCC 4 cut(s) 17, 161, 506, 765
ScrFI CCNGG 5 cut(s) 6, 633, 772, 843, 931
SduI GDGCHC 2 cut(s) 649, 1046
SexAI ACCWGGT 1 cut(s) 631
SfaNI GCATC 4 cut(s) 527, 881, 950, 972
SfoI GGCGCC 1 cut(s) 115
SinI GGWCC 3 cut(s) 17, 161, 765
SmiMI CAYNNNNRTG 2 cut(s) 131, 289
SmlI CTYRAG 1 cut(s) 1117
SmoI CTYRAG 1 cut(s) 1117
Sse9I AATT 6 cut(s) 392, 522, 760, 807, 1050, 1174
SseBI AGGCCT 1 cut(s) 1022
SsiI CCGC 4 cut(s) 34, 41, 98, 117
SspDI GGCGCC 1 cut(s) 113
SspMI CTAG 1 cut(s) 945
StuI AGGCCT 1 cut(s) 1022
StyD4I CCNGG 5 cut(s) 4, 631, 770, 841, 929
StyI CCWWGG 2 cut(s) 72, 1023
TaaI ACNGT 2 cut(s) 161, 334
TaiI ACGT 3 cut(s) 126, 186, 561
TaqI TCGA 5 cut(s) 46, 177, 219, 465, 1159
TasI AATT 6 cut(s) 392, 522, 760, 807, 1050, 1174
TatI WGTACW 2 cut(s) 1084, 1150
TauI GCSGC 2 cut(s) 43, 119
TfiI GAWTC 3 cut(s) 532, 668, 1070
Tru1I TTAA 4 cut(s) 336, 657, 675, 759
Tru9I TTAA 4 cut(s) 336, 657, 675, 759
TscAI CASTG 7 cut(s) 19, 283, 296, 806, 865, 997, 1071
TseFI GTSAC 3 cut(s) 10, 124, 274
TseI GCWGC 3 cut(s) 232, 869, 1076
Tsp45I GTSAC 3 cut(s) 10, 124, 274
TspDTI ATGAA 2 cut(s) 593, 1128
TspRI CASTG 7 cut(s) 19, 283, 296, 806, 865, 997, 1071
VpaK11BI GGWCC 3 cut(s) 17, 161, 765
VspI ATTAAT 2 cut(s) 675, 759
XapI RAATTY 1 cut(s) 1174
XbaI TCTAGA 1 cut(s) 944
XceI RCATGY 2 cut(s) 464, 990
XspI CTAG 1 cut(s) 945
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.