Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD07G1185800.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0327941 |
| rosa_laevigata | RLG00000018282 |
| rosa_multiflora | Rmu_co8368975.1_g000001 Rmu_sc0002900.1_g000003 Rmu_sc0003410.1_g000003 Rmu_sc0009365.1_g000011 Rmu_sc0011124.1_g000001 Rmu_sc0011806.1_g000003 Rmu_sc0014304.1_g000001 Rmu_sc0026800.1_g000001 Rmu_ssc0000026.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00047290 Rroxscaffold_5G00349170 Rroxscaffold_7G00169450 |
| rosa_rugosa | Rorug02G0307300 |
| rosa_samantha | Rh1CG170200 Rh2BG294200 Rh2BG331900 Rh2CG478300 Rh2CG514100 Rh3DG332200 Rh4BG389200 Rh4CG173800 Rh5CG378500 Rh7AG370300 Rh7AG371300 Rh7BG367300 Rh7CG389100 Rh7CG389900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 226 |
| AfaI | GTAC | 1 cut(s) | 77 |
| AgsI | TTSAA | 4 cut(s) | 88, 130, 197, 226 |
| AluBI | AGCT | 4 cut(s) | 12, 84, 91, 119 |
| AluI | AGCT | 4 cut(s) | 12, 84, 91, 119 |
| Ama87I | CYCGRG | 1 cut(s) | 79 |
| ApoI | RAATTY | 1 cut(s) | 226 |
| AsuHPI | GGTGA | 1 cut(s) | 116 |
| AvaI | CYCGRG | 1 cut(s) | 79 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 68, 100 |
| BccI | CCATC | 1 cut(s) | 101 |
| BfmI | CTRYAG | 1 cut(s) | 139 |
| BmeT110I | CYCGRG | 1 cut(s) | 79 |
| BmsI | GCATC | 1 cut(s) | 147 |
| BsaBI | GATNNNNATC | 1 cut(s) | 36 |
| BsaJI | CCNNGG | 1 cut(s) | 69 |
| Bse8I | GATNNNNATC | 1 cut(s) | 36 |
| BseDI | CCNNGG | 1 cut(s) | 69 |
| BseJI | GATNNNNATC | 1 cut(s) | 36 |
| BseMII | CTCAG | 1 cut(s) | 22 |
| BsiHKCI | CYCGRG | 1 cut(s) | 79 |
| BsoBI | CYCGRG | 1 cut(s) | 79 |
| Bsp143I | GATC | 1 cut(s) | 37 |
| BspCNI | CTCAG | 1 cut(s) | 21 |
| BssECI | CCNNGG | 1 cut(s) | 69 |
| BssMI | GATC | 1 cut(s) | 37 |
| Bst4CI | ACNGT | 3 cut(s) | 70, 187, 201 |
| BstDEI | CTNAG | 1 cut(s) | 8 |
| BstDSI | CCRYGG | 1 cut(s) | 69 |
| BstKTI | GATC | 1 cut(s) | 40 |
| BstMBI | GATC | 1 cut(s) | 37 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 61 |
| BstSFI | CTRYAG | 1 cut(s) | 139 |
| BtgI | CCRYGG | 1 cut(s) | 69 |
| BtgZI | GCGATG | 1 cut(s) | 167 |
| Csp6I | GTAC | 1 cut(s) | 76 |
| CviAII | CATG | 2 cut(s) | 161, 258 |
| CviJI | RGCY | 5 cut(s) | 12, 50, 84, 91, 119 |
| CviKI_1 | RGCY | 5 cut(s) | 12, 50, 84, 91, 119 |
| CviQI | GTAC | 1 cut(s) | 76 |
| DdeI | CTNAG | 1 cut(s) | 8 |
| DpnI | GATC | 1 cut(s) | 39 |
| DpnII | GATC | 1 cut(s) | 37 |
| Eco88I | CYCGRG | 1 cut(s) | 79 |
| EcoT22I | ATGCAT | 1 cut(s) | 162 |
| FaeI | CATG | 2 cut(s) | 164, 261 |
| FaiI | YATR | 5 cut(s) | 141, 162, 175, 215, 259 |
| FatI | CATG | 2 cut(s) | 160, 257 |
| Hin1II | CATG | 2 cut(s) | 164, 261 |
| HindIII | AAGCTT | 1 cut(s) | 89 |
| HinfI | GANTC | 1 cut(s) | 58 |
| HphI | GGTGA | 1 cut(s) | 116 |
| HpyAV | CCTTC | 1 cut(s) | 34 |
| HpyCH4III | ACNGT | 3 cut(s) | 70, 187, 201 |
| HpyCH4V | TGCA | 1 cut(s) | 160 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 61 |
| HpyF3I | CTNAG | 1 cut(s) | 8 |
| Hsp92II | CATG | 2 cut(s) | 164, 261 |
| Kzo9I | GATC | 1 cut(s) | 37 |
| LweI | GCATC | 1 cut(s) | 147 |
| MaeIII | GTNAC | 1 cut(s) | 187 |
| MalI | GATC | 1 cut(s) | 39 |
| MboI | GATC | 1 cut(s) | 37 |
| MboII | GAAGA | 1 cut(s) | 32 |
| MluCI | AATT | 1 cut(s) | 226 |
| MmeI | TCCRAC | 1 cut(s) | 206 |
| Mph1103I | ATGCAT | 1 cut(s) | 162 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 61 |
| NdeII | GATC | 1 cut(s) | 37 |
| NlaIII | CATG | 2 cut(s) | 164, 261 |
| NsiI | ATGCAT | 1 cut(s) | 162 |
| PfeI | GAWTC | 1 cut(s) | 58 |
| RsaI | GTAC | 1 cut(s) | 77 |
| RsaNI | GTAC | 1 cut(s) | 76 |
| Sau3AI | GATC | 1 cut(s) | 37 |
| SetI | ASST | 4 cut(s) | 14, 86, 93, 121 |
| SfaNI | GCATC | 1 cut(s) | 147 |
| SfcI | CTRYAG | 1 cut(s) | 139 |
| SgeI | CNNG | 6 cut(s) | 82, 91, 93, 100, 104, 173 |
| Sse9I | AATT | 1 cut(s) | 226 |
| TaaI | ACNGT | 3 cut(s) | 70, 187, 201 |
| TasI | AATT | 1 cut(s) | 226 |
| TfiI | GAWTC | 1 cut(s) | 58 |
| TspDTI | ATGAA | 1 cut(s) | 177 |
| XapI | RAATTY | 1 cut(s) | 226 |
| Zsp2I | ATGCAT | 1 cut(s) | 162 |