RchiOBHm_Chr1g0344921

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002592
Physical Location & Seq
Forward (+)
37304197 .. 37306255
2059 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGACAAAGAGAACCAAGAAGGCTGGTATTGTCGGGAAGTATGGAACCCGATATGGTGCTAGTTTGAGGAAGCAGATTAAGAAGATGGAGGTCAGTCAGCACAGCAAGTACTTCTGTGAATTTTGCGGCAAGTATGCAGTGAAGAGAAAGGCTGTTGGAATCTGGGGTTGCAAAGACTGCGGCAAAGTGAAAGCTGGAGGTGCCTACACACTCAATACTGCAAGTGCCGTGACAGTTAGGAGCACCATCCGAAGGCTCAGAGAGCAGACTGAGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L37ae

Protein Analysis

92

Amino Acids

10.26

Weight (kDa)

10.24

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L37ae PF01780 4 - 88 1.6e-39 Ribosomal L37ae protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 2 cut(s) 126, 180
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 1 cut(s) 252
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Alw21I GWGCWC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 119
BanI GGYRCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 245
BccI CCATC 2 cut(s) 79, 254
BceAI ACGGC 1 cut(s) 212
BfaI CTAG 1 cut(s) 60
BisI GCNGC 2 cut(s) 127, 181
BlsI GCNGC 2 cut(s) 128, 182
BmcAI AGTACT 1 cut(s) 110
BmiI GGNNCC 2 cut(s) 46, 202
BpmI CTGGAG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMII CTCAG 2 cut(s) 261, 271
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 245
BslI CCNNNNNNNGG 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 245
BspACI CCGC 2 cut(s) 126, 180
BspCNI CTCAG 2 cut(s) 262, 270
BspLI GGNNCC 2 cut(s) 46, 202
BspT107I GGYRCC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 257, 270
BstF5I GGATG 1 cut(s) 246
BstMWI GCNNNNNNNGC 3 cut(s) 177, 200, 262
BtsCI GGATG 1 cut(s) 246
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Csp6I GTAC 1 cut(s) 109
CviJI RGCY 4 cut(s) 23, 152, 194, 256
CviKI_1 RGCY 4 cut(s) 23, 152, 194, 256
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 257, 270
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
FaiI YATR 3 cut(s) 42, 54, 135
Fnu4HI GCNGC 2 cut(s) 127, 181
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 127, 181
FspBI CTAG 1 cut(s) 60
GluI GCNGC 2 cut(s) 127, 181
GsuI CTGGAG 1 cut(s) 216
HinfI GANTC 1 cut(s) 159
Hpy188I TCNGA 2 cut(s) 251, 260
Hpy188III TCNNGA 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 13, 246
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 3 cut(s) 137, 171, 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 200, 262
HpyF3I CTNAG 2 cut(s) 257, 270
LmnI GCTCC 1 cut(s) 240
LpnPI CCDG 3 cut(s) 9, 148, 180
MaeI CTAG 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 229
MboII GAAGA 2 cut(s) 94, 154
MhlI GDGCHC 1 cut(s) 245
MluCI AATT 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 136
MnlI CCTC 3 cut(s) 60, 82, 191
MseI TTAA 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 177, 200, 262
NlaIV GGNNCC 2 cut(s) 46, 202
NmuCI GTSAC 1 cut(s) 229
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 2 cut(s) 128, 182
PspN4I GGNNCC 2 cut(s) 46, 202
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
SaqAI TTAA 1 cut(s) 78
SatI GCNGC 2 cut(s) 127, 181
ScaI AGTACT 1 cut(s) 110
SduI GDGCHC 1 cut(s) 245
SetI ASST 3 cut(s) 93, 196, 202
Sse9I AATT 1 cut(s) 119
SsiI CCGC 2 cut(s) 126, 180
SspMI CTAG 1 cut(s) 60
TaaI ACNGT 1 cut(s) 235
TasI AATT 1 cut(s) 119
TatI WGTACW 1 cut(s) 108
TauI GCSGC 2 cut(s) 129, 183
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 78
Tru9I TTAA 1 cut(s) 78
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 229
TspRI CASTG 1 cut(s) 144
XapI RAATTY 1 cut(s) 119
XspI CTAG 1 cut(s) 60
ZrmI AGTACT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.