transposition
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Pol_BBD | PF22936 | 109 - 185 | 3.1e-11 | Pol polyprotein, beta-barrel domain |
| gag_pre-integrs | PF13976 | 216 - 277 | 1.1e-09 | GAG-pre-integrase domain |
| rve | PF00665 | 290 - 390 | 4e-14 | Integrase core domain |
| RVT_2 | PF07727 | 678 - 917 | 1e-60 | Reverse transcriptase (RNA-dependent DNA polymerase) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1538 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1660 |
| Acc16I | TGCGCA | 1 cut(s) | 1821 |
| Acc36I | ACCTGC | 4 cut(s) | 1538, 1558, 2224, 2632 |
| Acc65I | GGTACC | 2 cut(s) | 1894, 2822 |
| AccB1I | GGYRCC | 3 cut(s) | 1894, 2822, 2951 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2461 |
| AccI | GTMKAC | 1 cut(s) | 2310 |
| AccIII | TCCGGA | 1 cut(s) | 2851 |
| AclWI | GGATC | 1 cut(s) | 311 |
| AcoI | YGGCCR | 2 cut(s) | 1766, 2494 |
| AcsI | RAATTY | 8 cut(s) | 70, 109, 479, 882, 959, 1094, 1148, 2804 |
| AcuI | CTGAAG | 2 cut(s) | 1361, 1384 |
| AdeI | CACNNNGTG | 1 cut(s) | 406 |
| AfaI | GTAC | 7 cut(s) | 451, 971, 1126, 1896, 2230, 2824, 3214 |
| AfeI | AGCGCT | 1 cut(s) | 1838 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 296, 338, 392, 717, 1618, 1905, 2395, 2461 |
| AflIII | ACRYGT | 1 cut(s) | 405 |
| AgeI | ACCGGT | 3 cut(s) | 446, 1618, 2992 |
| AjiI | CACGTC | 1 cut(s) | 2144 |
| AjnI | CCWGG | 2 cut(s) | 268, 2326 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2490, 2522 |
| Alw21I | GWGCWC | 9 cut(s) | 304, 820, 1249, 1852, 1927, 1999, 2429, 2815, 3102 |
| Alw26I | GTCTC | 5 cut(s) | 623, 2049, 2268, 2659, 3168 |
| Alw44I | GTGCAC | 2 cut(s) | 816, 2811 |
| AlwI | GGATC | 1 cut(s) | 311 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 97, 1676 |
| Ama87I | CYCGRG | 3 cut(s) | 1704, 1920, 2403 |
| Aor13HI | TCCGGA | 1 cut(s) | 2851 |
| Aor51HI | AGCGCT | 1 cut(s) | 1838 |
| AoxI | GGCC | 8 cut(s) | 164, 271, 1598, 1766, 2348, 2386, 2494, 2615 |
| ApaLI | GTGCAC | 2 cut(s) | 816, 2811 |
| ApoI | RAATTY | 8 cut(s) | 70, 109, 479, 882, 959, 1094, 1148, 2804 |
| AseI | ATTAAT | 2 cut(s) | 1296, 2673 |
| AsiGI | ACCGGT | 3 cut(s) | 446, 1618, 2992 |
| Asp718I | GGTACC | 2 cut(s) | 1894, 2822 |
| AspLEI | GCGC | 2 cut(s) | 1822, 1839 |
| AspS9I | GGNCC | 7 cut(s) | 164, 272, 395, 632, 1598, 2615, 3079 |
| AsuC2I | CCSGG | 1 cut(s) | 1888 |
| AsuNHI | GCTAGC | 1 cut(s) | 148 |
| AvaI | CYCGRG | 3 cut(s) | 1704, 1920, 2403 |
| AvaII | GGWCC | 3 cut(s) | 395, 632, 3079 |
| AxyI | CCTNAGG | 2 cut(s) | 466, 1132 |
| BaeGI | GKGCMC | 2 cut(s) | 820, 2815 |
| BalI | TGGCCA | 1 cut(s) | 1768 |
| BanI | GGYRCC | 3 cut(s) | 1894, 2822, 2951 |
| BanII | GRGCYC | 4 cut(s) | 304, 1852, 1927, 2429 |
| BauI | CACGAG | 1 cut(s) | 2901 |
| BbsI | GAAGAC | 2 cut(s) | 3, 490 |
| Bbv12I | GWGCWC | 9 cut(s) | 304, 820, 1249, 1852, 1927, 1999, 2429, 2815, 3102 |
| BceAI | ACGGC | 4 cut(s) | 1615, 2509, 2906, 3033 |
| BciT130I | CCWGG | 2 cut(s) | 270, 2328 |
| BciVI | GTATCC | 3 cut(s) | 339, 1321, 1920 |
| BclI | TGATCA | 2 cut(s) | 2208, 2338 |
| BcnI | CCSGG | 1 cut(s) | 1888 |
| BcoDI | GTCTC | 5 cut(s) | 623, 2049, 2268, 2659, 3168 |
| BfaI | CTAG | 4 cut(s) | 149, 771, 2346, 3285 |
| BfmI | CTRYAG | 2 cut(s) | 1686, 1737 |
| BfoI | RGCGCY | 1 cut(s) | 1840 |
| BfuAI | ACCTGC | 4 cut(s) | 1538, 1558, 2224, 2632 |
| BfuI | GTATCC | 3 cut(s) | 339, 1321, 1920 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 163, 1217 |
| BlpI | GCTNAGC | 1 cut(s) | 153 |
| Bme1390I | CCNGG | 3 cut(s) | 270, 1888, 2328 |
| Bme18I | GGWCC | 3 cut(s) | 395, 632, 3079 |
| BmeT110I | CYCGRG | 3 cut(s) | 1704, 1920, 2403 |
| BmgBI | CACGTC | 1 cut(s) | 2144 |
| BmgT120I | GGNCC | 7 cut(s) | 164, 272, 395, 632, 1598, 2615, 3079 |
| BmrFI | CCNGG | 3 cut(s) | 270, 1888, 2328 |
| BmrI | ACTGGG | 2 cut(s) | 1333, 2878 |
| BmsI | GCATC | 4 cut(s) | 1807, 2569, 2940, 3007 |
| BmtI | GCTAGC | 1 cut(s) | 152 |
| BmuI | ACTGGG | 2 cut(s) | 1333, 2878 |
| BpiI | GAAGAC | 2 cut(s) | 3, 490 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1839, 1871, 2884, 2916 |
| BpmI | CTGGAG | 5 cut(s) | 318, 1632, 1683, 1817, 2046 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2154 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 153 |
| BpuEI | CTTGAG | 1 cut(s) | 1953 |
| BpuMI | CCSGG | 1 cut(s) | 1888 |
| Bsa29I | ATCGAT | 1 cut(s) | 2127 |
| BsaBI | GATNNNNATC | 1 cut(s) | 588 |
| BsaI | GGTCTC | 2 cut(s) | 2049, 2268 |
| BsaJI | CCNNGG | 6 cut(s) | 33, 1215, 1763, 2491, 2584, 2955 |
| BsaWI | WCCGGW | 5 cut(s) | 446, 1618, 1756, 2851, 2992 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 296, 338, 392, 717, 1618, 1905, 2395, 2461 |
| Bse118I | RCCGGY | 3 cut(s) | 446, 1618, 2992 |
| Bse1I | ACTGG | 6 cut(s) | 616, 669, 1328, 2732, 2884, 3060 |
| Bse21I | CCTNAGG | 2 cut(s) | 466, 1132 |
| Bse3DI | GCAATG | 3 cut(s) | 1029, 1206, 2557 |
| Bse8I | GATNNNNATC | 1 cut(s) | 588 |
| BseAI | TCCGGA | 1 cut(s) | 2851 |
| BseBI | CCWGG | 2 cut(s) | 270, 2328 |
| BseCI | ATCGAT | 1 cut(s) | 2127 |
| BseDI | CCNNGG | 6 cut(s) | 33, 1215, 1763, 2491, 2584, 2955 |
| BseJI | GATNNNNATC | 1 cut(s) | 588 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 296, 338, 392, 717, 1618, 1905, 2395, 2461 |
| BseMI | GCAATG | 3 cut(s) | 1029, 1206, 2557 |
| BseMII | CTCAG | 6 cut(s) | 167, 395, 980, 2737, 2814, 2996 |
| BseNI | ACTGG | 6 cut(s) | 616, 669, 1328, 2732, 2884, 3060 |
| BseRI | GAGGAG | 6 cut(s) | 16, 165, 463, 1820, 1847, 2391 |
| BseSI | GKGCMC | 2 cut(s) | 820, 2815 |
| BsgI | GTGCAG | 3 cut(s) | 230, 1599, 2606 |
| Bsh1285I | CGRYCG | 2 cut(s) | 1950, 2131 |
| BshFI | GGCC | 8 cut(s) | 166, 273, 1600, 1768, 2350, 2388, 2496, 2617 |
| BshNI | GGYRCC | 3 cut(s) | 1894, 2822, 2951 |
| BshTI | ACCGGT | 3 cut(s) | 446, 1618, 2992 |
| BshVI | ATCGAT | 1 cut(s) | 2127 |
| BsiEI | CGRYCG | 2 cut(s) | 1950, 2131 |
| BsiHKAI | GWGCWC | 9 cut(s) | 304, 820, 1249, 1852, 1927, 1999, 2429, 2815, 3102 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1704, 1920, 2403 |
| BsiSI | CCGG | 6 cut(s) | 447, 1619, 1757, 1887, 2852, 2993 |
| BslFI | GGGAC | 3 cut(s) | 201, 1102, 1488 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 296, 338, 392, 717, 1618, 1905, 2395, 2461 |
| BsmAI | GTCTC | 5 cut(s) | 623, 2049, 2268, 2659, 3168 |
| BsmBI | CGTCTC | 2 cut(s) | 623, 2659 |
| BsmFI | GGGAC | 3 cut(s) | 201, 1102, 1488 |
| BsmI | GAATGC | 3 cut(s) | 504, 1137, 2293 |
| BsnI | GGCC | 8 cut(s) | 166, 273, 1600, 1768, 2350, 2388, 2496, 2617 |
| Bso31I | GGTCTC | 2 cut(s) | 2049, 2268 |
| BsoBI | CYCGRG | 3 cut(s) | 1704, 1920, 2403 |
| Bsp1286I | GDGCHC | 9 cut(s) | 304, 820, 1249, 1852, 1927, 1999, 2429, 2815, 3102 |
| Bsp13I | TCCGGA | 1 cut(s) | 2851 |
| Bsp1407I | TGTACA | 2 cut(s) | 1124, 3212 |
| Bsp143I | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 153 |
| Bsp19I | CCATGG | 2 cut(s) | 33, 1215 |
| BspANI | GGCC | 8 cut(s) | 166, 273, 1600, 1768, 2350, 2388, 2496, 2617 |
| BspCNI | CTCAG | 6 cut(s) | 166, 394, 979, 2736, 2813, 2995 |
| BspDI | ATCGAT | 1 cut(s) | 2127 |
| BspEI | TCCGGA | 1 cut(s) | 2851 |
| BspHI | TCATGA | 1 cut(s) | 2025 |
| BspMAI | CTGCAG | 1 cut(s) | 1690 |
| BspMI | ACCTGC | 4 cut(s) | 1538, 1558, 2224, 2632 |
| BspOI | GCTAGC | 1 cut(s) | 152 |
| BspPI | GGATC | 1 cut(s) | 311 |
| BspT107I | GGYRCC | 3 cut(s) | 1894, 2822, 2951 |
| BspTNI | GGTCTC | 2 cut(s) | 2049, 2268 |
| BsrDI | GCAATG | 3 cut(s) | 1029, 1206, 2557 |
| BsrFI | RCCGGY | 3 cut(s) | 446, 1618, 2992 |
| BsrGI | TGTACA | 2 cut(s) | 1124, 3212 |
| BsrI | ACTGG | 6 cut(s) | 616, 669, 1328, 2732, 2884, 3060 |
| BssAI | RCCGGY | 3 cut(s) | 446, 1618, 2992 |
| BssECI | CCNNGG | 6 cut(s) | 33, 1215, 1763, 2491, 2584, 2955 |
| BssMI | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| BssNAI | GTATAC | 1 cut(s) | 2311 |
| BssSI | CACGAG | 1 cut(s) | 2901 |
| BssT1I | CCWWGG | 4 cut(s) | 33, 1215, 2584, 2955 |
| Bst1107I | GTATAC | 1 cut(s) | 2311 |
| Bst2BI | CACGAG | 1 cut(s) | 2901 |
| Bst2UI | CCWGG | 2 cut(s) | 270, 2328 |
| Bst4CI | ACNGT | 7 cut(s) | 118, 543, 728, 1657, 2077, 2233, 2832 |
| Bst6I | CTCTTC | 7 cut(s) | 34, 55, 459, 748, 1380, 1809, 2271 |
| BstAUI | TGTACA | 2 cut(s) | 1124, 3212 |
| BstC8I | GCNNGC | 7 cut(s) | 150, 1222, 1516, 1841, 1995, 3031, 3325 |
| BstDSI | CCRYGG | 4 cut(s) | 33, 1215, 1763, 2491 |
| BstEII | GGTNACC | 1 cut(s) | 734 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2393 |
| BstH2I | RGCGCY | 1 cut(s) | 1840 |
| BstHHI | GCGC | 2 cut(s) | 1822, 1839 |
| BstKTI | GATC | 8 cut(s) | 319, 2068, 2131, 2211, 2341, 2560, 2698, 3091 |
| BstMAI | GTCTC | 5 cut(s) | 623, 2049, 2268, 2659, 3168 |
| BstMBI | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| BstMCI | CGRYCG | 2 cut(s) | 1950, 2131 |
| BstNI | CCWGG | 2 cut(s) | 270, 2328 |
| BstPI | GGTNACC | 1 cut(s) | 734 |
| BstSCI | CCNGG | 3 cut(s) | 268, 1886, 2326 |
| BstSFI | CTRYAG | 2 cut(s) | 1686, 1737 |
| BstSLI | GKGCMC | 2 cut(s) | 820, 2815 |
| BstV2I | GAAGAC | 2 cut(s) | 3, 490 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1416 |
| BstZ17I | GTATAC | 1 cut(s) | 2311 |
| Bsu15I | ATCGAT | 1 cut(s) | 2127 |
| Bsu36I | CCTNAGG | 2 cut(s) | 466, 1132 |
| BsuI | GTATCC | 3 cut(s) | 339, 1321, 1920 |
| BsuRI | GGCC | 8 cut(s) | 166, 273, 1600, 1768, 2350, 2388, 2496, 2617 |
| BsuTUI | ATCGAT | 1 cut(s) | 2127 |
| BtgI | CCRYGG | 4 cut(s) | 33, 1215, 1763, 2491 |
| BtgZI | GCGATG | 1 cut(s) | 1611 |
| BtrI | CACGTC | 1 cut(s) | 2144 |
| BtsI | GCAGTG | 2 cut(s) | 2618, 3197 |
| BtsIMutI | CAGTG | 4 cut(s) | 609, 676, 2618, 3197 |
| BveI | ACCTGC | 4 cut(s) | 1538, 1558, 2224, 2632 |
| Cac8I | GCNNGC | 7 cut(s) | 150, 1222, 1516, 1841, 1995, 3031, 3325 |
| CaiI | CAGNNNCTG | 2 cut(s) | 97, 1676 |
| CciI | TCATGA | 1 cut(s) | 2025 |
| CfoI | GCGC | 2 cut(s) | 1822, 1839 |
| Cfr10I | RCCGGY | 3 cut(s) | 446, 1618, 2992 |
| Cfr13I | GGNCC | 7 cut(s) | 164, 272, 395, 632, 1598, 2615, 3079 |
| ClaI | ATCGAT | 1 cut(s) | 2127 |
| CseI | GACGC | 1 cut(s) | 980 |
| Csp6I | GTAC | 7 cut(s) | 450, 970, 1125, 1895, 2229, 2823, 3213 |
| CspAI | ACCGGT | 3 cut(s) | 446, 1618, 2992 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 274, 309 |
| CviQI | GTAC | 7 cut(s) | 450, 970, 1125, 1895, 2229, 2823, 3213 |
| DpnI | GATC | 8 cut(s) | 318, 2067, 2130, 2210, 2340, 2559, 2697, 3090 |
| DpnII | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| DraI | TTTAAA | 1 cut(s) | 2137 |
| DraIII | CACNNNGTG | 1 cut(s) | 406 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1660 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1660 |
| EaeI | YGGCCR | 2 cut(s) | 1766, 2494 |
| Eam1104I | CTCTTC | 7 cut(s) | 34, 55, 459, 748, 1380, 1809, 2271 |
| EarI | CTCTTC | 7 cut(s) | 34, 55, 459, 748, 1380, 1809, 2271 |
| EciI | GGCGGA | 1 cut(s) | 700 |
| Ecl136II | GAGCTC | 4 cut(s) | 302, 1850, 1925, 2427 |
| Eco130I | CCWWGG | 4 cut(s) | 33, 1215, 2584, 2955 |
| Eco24I | GRGCYC | 4 cut(s) | 304, 1852, 1927, 2429 |
| Eco31I | GGTCTC | 2 cut(s) | 2049, 2268 |
| Eco32I | GATATC | 1 cut(s) | 3234 |
| Eco47I | GGWCC | 3 cut(s) | 395, 632, 3079 |
| Eco47III | AGCGCT | 1 cut(s) | 1838 |
| Eco53kI | GAGCTC | 4 cut(s) | 302, 1850, 1925, 2427 |
| Eco57I | CTGAAG | 2 cut(s) | 1361, 1384 |
| Eco81I | CCTNAGG | 2 cut(s) | 466, 1132 |
| Eco88I | CYCGRG | 3 cut(s) | 1704, 1920, 2403 |
| Eco91I | GGTNACC | 1 cut(s) | 734 |
| EcoICRI | GAGCTC | 4 cut(s) | 302, 1850, 1925, 2427 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2393 |
| EcoO109I | RGGNCCY | 2 cut(s) | 632, 1598 |
| EcoO65I | GGTNACC | 1 cut(s) | 734 |
| EcoRI | GAATTC | 1 cut(s) | 109 |
| EcoRII | CCWGG | 2 cut(s) | 268, 2326 |
| EcoRV | GATATC | 1 cut(s) | 3234 |
| EcoT14I | CCWWGG | 4 cut(s) | 33, 1215, 2584, 2955 |
| EcoT38I | GRGCYC | 4 cut(s) | 304, 1852, 1927, 2429 |
| ErhI | CCWWGG | 4 cut(s) | 33, 1215, 2584, 2955 |
| Esp3I | CGTCTC | 2 cut(s) | 623, 2659 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2130, 2162 |
| FaqI | GGGAC | 3 cut(s) | 201, 1102, 1488 |
| FauI | CCCGC | 3 cut(s) | 1498, 3022, 3053 |
| FbaI | TGATCA | 2 cut(s) | 2208, 2338 |
| FblI | GTMKAC | 1 cut(s) | 2310 |
| FriOI | GRGCYC | 4 cut(s) | 304, 1852, 1927, 2429 |
| FspAI | RTGCGCAY | 1 cut(s) | 1821 |
| FspBI | CTAG | 4 cut(s) | 149, 771, 2346, 3285 |
| FspI | TGCGCA | 1 cut(s) | 1821 |
| GlaI | GCGC | 2 cut(s) | 1821, 1838 |
| GsuI | CTGGAG | 5 cut(s) | 318, 1632, 1683, 1817, 2046 |
| HaeII | RGCGCY | 1 cut(s) | 1840 |
| HaeIII | GGCC | 8 cut(s) | 166, 273, 1600, 1768, 2350, 2388, 2496, 2617 |
| HapII | CCGG | 6 cut(s) | 447, 1619, 1757, 1887, 2852, 2993 |
| HgaI | GACGC | 1 cut(s) | 980 |
| HhaI | GCGC | 2 cut(s) | 1822, 1839 |
| Hin6I | GCGC | 2 cut(s) | 1820, 1837 |
| HinP1I | GCGC | 2 cut(s) | 1820, 1837 |
| HincII | GTYRAC | 3 cut(s) | 1278, 2527, 2872 |
| HindII | GTYRAC | 3 cut(s) | 1278, 2527, 2872 |
| HindIII | AAGCTT | 3 cut(s) | 1427, 1971, 2569 |
| HpaI | GTTAAC | 2 cut(s) | 1278, 2527 |
| HpaII | CCGG | 6 cut(s) | 447, 1619, 1757, 1887, 2852, 2993 |
| Hpy99I | CGWCG | 2 cut(s) | 996, 1589 |
| HpyAV | CCTTC | 8 cut(s) | 519, 1036, 1238, 1371, 1454, 1458, 1611, 3338 |
| HpyCH4III | ACNGT | 7 cut(s) | 118, 543, 728, 1657, 2077, 2233, 2832 |
| HpyCH4IV | ACGT | 2 cut(s) | 405, 2143 |
| HpySE526I | ACGT | 2 cut(s) | 405, 2143 |
| HspAI | GCGC | 2 cut(s) | 1820, 1837 |
| Kpn2I | TCCGGA | 1 cut(s) | 2851 |
| KpnI | GGTACC | 2 cut(s) | 1898, 2826 |
| Ksp22I | TGATCA | 2 cut(s) | 2208, 2338 |
| KspAI | GTTAAC | 2 cut(s) | 1278, 2527 |
| Kzo9I | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| LmnI | GCTCC | 9 cut(s) | 130, 299, 476, 1252, 1848, 2002, 2373, 2404, 3105 |
| LweI | GCATC | 4 cut(s) | 1807, 2569, 2940, 3007 |
| MaeI | CTAG | 4 cut(s) | 149, 771, 2346, 3285 |
| MaeII | ACGT | 2 cut(s) | 405, 2143 |
| MaeIII | GTNAC | 5 cut(s) | 734, 1079, 1558, 1713, 2539 |
| MalI | GATC | 8 cut(s) | 318, 2067, 2130, 2210, 2340, 2559, 2697, 3090 |
| MboI | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| MfeI | CAATTG | 5 cut(s) | 220, 322, 836, 1410, 3118 |
| MhlI | GDGCHC | 9 cut(s) | 304, 820, 1249, 1852, 1927, 1999, 2429, 2815, 3102 |
| MlsI | TGGCCA | 1 cut(s) | 1768 |
| MluNI | TGGCCA | 1 cut(s) | 1768 |
| MlyI | GAGTC | 8 cut(s) | 1363, 1688, 1877, 1937, 2311, 2902, 3035, 3147 |
| MmeI | TCCRAC | 1 cut(s) | 230 |
| Mox20I | TGGCCA | 1 cut(s) | 1768 |
| MroI | TCCGGA | 1 cut(s) | 2851 |
| MscI | TGGCCA | 1 cut(s) | 1768 |
| MseI | TTAA | 9 cut(s) | 1277, 1296, 1320, 2136, 2181, 2391, 2526, 2604, 2673 |
| MslI | CAYNNNNRTG | 2 cut(s) | 894, 1034 |
| Msp20I | TGGCCA | 1 cut(s) | 1768 |
| MspA1I | CMGCKG | 2 cut(s) | 1676, 1691 |
| MspI | CCGG | 6 cut(s) | 447, 1619, 1757, 1887, 2852, 2993 |
| MspR9I | CCNGG | 3 cut(s) | 270, 1888, 2328 |
| MunI | CAATTG | 5 cut(s) | 220, 322, 836, 1410, 3118 |
| Mva1269I | GAATGC | 3 cut(s) | 504, 1137, 2293 |
| MvaI | CCWGG | 2 cut(s) | 270, 2328 |
| NciI | CCSGG | 1 cut(s) | 1888 |
| NcoI | CCATGG | 2 cut(s) | 33, 1215 |
| NdeII | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| NheI | GCTAGC | 1 cut(s) | 148 |
| NmeAIII | GCCGAG | 2 cut(s) | 1213, 3161 |
| NmuCI | GTSAC | 3 cut(s) | 734, 1079, 1558 |
| NsbI | TGCGCA | 1 cut(s) | 1821 |
| PaeR7I | CTCGAG | 2 cut(s) | 1920, 2403 |
| PagI | TCATGA | 1 cut(s) | 2025 |
| PaqCI | CACCTGC | 1 cut(s) | 1538 |
| PctI | GAATGC | 3 cut(s) | 504, 1137, 2293 |
| PfeI | GAWTC | 5 cut(s) | 425, 930, 1455, 2468, 2986 |
| PflFI | GACNNNGTC | 1 cut(s) | 1946 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2461 |
| PfoI | TCCNGGA | 1 cut(s) | 1886 |
| PinAI | ACCGGT | 3 cut(s) | 446, 1618, 2992 |
| Ple19I | CGATCG | 1 cut(s) | 2131 |
| PleI | GAGTC | 8 cut(s) | 1362, 1688, 1877, 1937, 2311, 2901, 3035, 3146 |
| PpsI | GAGTC | 8 cut(s) | 1362, 1688, 1877, 1937, 2311, 2901, 3035, 3146 |
| PpuMI | RGGWCCY | 1 cut(s) | 632 |
| PshBI | ATTAAT | 2 cut(s) | 1296, 2673 |
| Psp124BI | GAGCTC | 4 cut(s) | 304, 1852, 1927, 2429 |
| Psp5II | RGGWCCY | 1 cut(s) | 632 |
| Psp6I | CCWGG | 2 cut(s) | 268, 2326 |
| PspEI | GGTNACC | 1 cut(s) | 734 |
| PspGI | CCWGG | 2 cut(s) | 268, 2326 |
| PspPI | GGNCC | 7 cut(s) | 164, 272, 395, 632, 1598, 2615, 3079 |
| PspPPI | RGGWCCY | 1 cut(s) | 632 |
| PspXI | VCTCGAGB | 2 cut(s) | 1920, 2403 |
| PstI | CTGCAG | 1 cut(s) | 1690 |
| PstNI | CAGNNNCTG | 2 cut(s) | 97, 1676 |
| PsyI | GACNNNGTC | 1 cut(s) | 1946 |
| PvuI | CGATCG | 1 cut(s) | 2131 |
| PvuII | CAGCTG | 2 cut(s) | 1676, 1691 |
| RsaI | GTAC | 7 cut(s) | 451, 971, 1126, 1896, 2230, 2824, 3214 |
| RsaNI | GTAC | 7 cut(s) | 450, 970, 1125, 1895, 2229, 2823, 3213 |
| RseI | CAYNNNNRTG | 2 cut(s) | 894, 1034 |
| SacI | GAGCTC | 4 cut(s) | 304, 1852, 1927, 2429 |
| SaqAI | TTAA | 9 cut(s) | 1277, 1296, 1320, 2136, 2181, 2391, 2526, 2604, 2673 |
| Sau3AI | GATC | 8 cut(s) | 316, 2065, 2128, 2208, 2338, 2557, 2695, 3088 |
| Sau96I | GGNCC | 7 cut(s) | 164, 272, 395, 632, 1598, 2615, 3079 |
| SchI | GAGTC | 8 cut(s) | 1363, 1688, 1877, 1937, 2311, 2902, 3035, 3147 |
| ScrFI | CCNGG | 3 cut(s) | 270, 1888, 2328 |
| SduI | GDGCHC | 9 cut(s) | 304, 820, 1249, 1852, 1927, 1999, 2429, 2815, 3102 |
| SfaNI | GCATC | 4 cut(s) | 1807, 2569, 2940, 3007 |
| SfcI | CTRYAG | 2 cut(s) | 1686, 1737 |
| Sfr274I | CTCGAG | 2 cut(s) | 1920, 2403 |
| SinI | GGWCC | 3 cut(s) | 395, 632, 3079 |
| SlaI | CTCGAG | 2 cut(s) | 1920, 2403 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 894, 1034 |
| SmlI | CTYRAG | 3 cut(s) | 1920, 1968, 2403 |
| SmoI | CTYRAG | 3 cut(s) | 1920, 1968, 2403 |
| SspI | AATATT | 2 cut(s) | 938, 1048 |
| SspMI | CTAG | 4 cut(s) | 149, 771, 2346, 3285 |
| SstI | GAGCTC | 4 cut(s) | 304, 1852, 1927, 2429 |
| StyD4I | CCNGG | 3 cut(s) | 268, 1886, 2326 |
| StyI | CCWWGG | 4 cut(s) | 33, 1215, 2584, 2955 |
| TaaI | ACNGT | 7 cut(s) | 118, 543, 728, 1657, 2077, 2233, 2832 |
| TaiI | ACGT | 2 cut(s) | 408, 2146 |
| TaqI | TCGA | 9 cut(s) | 107, 1464, 1921, 1950, 2127, 2404, 2446, 3129, 3236 |
| TaqII | GACCGA | 2 cut(s) | 1936, 2021 |
| TatI | WGTACW | 3 cut(s) | 969, 1124, 3212 |
| TauI | GCSGC | 2 cut(s) | 125, 1799 |
| TfiI | GAWTC | 5 cut(s) | 425, 930, 1455, 2468, 2986 |
| Tru1I | TTAA | 9 cut(s) | 1277, 1296, 1320, 2136, 2181, 2391, 2526, 2604, 2673 |
| Tru9I | TTAA | 9 cut(s) | 1277, 1296, 1320, 2136, 2181, 2391, 2526, 2604, 2673 |
| TscAI | CASTG | 4 cut(s) | 616, 676, 2625, 3204 |
| TseFI | GTSAC | 3 cut(s) | 734, 1079, 1558 |
| Tsp45I | GTSAC | 3 cut(s) | 734, 1079, 1558 |
| TspGWI | ACGGA | 4 cut(s) | 910, 1701, 1752, 2216 |
| TspRI | CASTG | 4 cut(s) | 616, 676, 2625, 3204 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1946 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2461 |
| VneI | GTGCAC | 2 cut(s) | 816, 2811 |
| VpaK11BI | GGWCC | 3 cut(s) | 395, 632, 3079 |
| VspI | ATTAAT | 2 cut(s) | 1296, 2673 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2393 |
| XapI | RAATTY | 8 cut(s) | 70, 109, 479, 882, 959, 1094, 1148, 2804 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1257 |
| XhoI | CTCGAG | 2 cut(s) | 1920, 2403 |
| XmiI | GTMKAC | 1 cut(s) | 2310 |
| XspI | CTAG | 4 cut(s) | 149, 771, 2346, 3285 |