RchiOBHm_Chr1g0352421

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0002353
Physical Location & Seq
Forward (+)
45800505 .. 45801080
576 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 576 bp
ATGAGCTCGGCAGATGAGTTGTTCTTGAATGGAAAGATCCGGCCCATGAAGCTCTCCACCCACCTGGAAAAGCCCCAGGCGCCGTTGCAAGCTGTCAACGAGGAAGATGGAGATGATCCATTCGAGTTCGGGCCACTGAGAGGCAGAGATCTGAGGATGAGGGACAAGTCTCTGCGGCGGATAACGAGATCCATGTCTCCGATGAGAAACATGCCCTTTGGTTGCGAGATTTACGACGAAAATGAAATCAGTAATAATGACTATTGCTTTGCGAAAGATCTGAAGGAGGGTGATTTGGGGAAGAAGAAGAAGAAGCCGGAGAATGGTGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGTTGGGAGCTTGGAGACTACTCCTTCGGTTTCGGCTTCGTCTTCAAGATCATCCTCAGTTGGAAGAAACTCGAAAAGATGGGTCTTTCTGAAAGATTTTCTCCACAGGAGTAAAAGTGAAGGGAGGAGTAACAAAAAATTCTGGGCCACAATCTCATTCTCGAGTAGTGGTAAAGGAGATGAAAATAGAGGCAAGTGTTGGGGGAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

191

Amino Acids

21.82

Weight (kDa)

5.91

Isoelectric Point (pI)

72.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 4 - 179 9e-29 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AciI CCGC 2 cut(s) 175, 178
AclWI GGATC 3 cut(s) 31, 110, 183
AcsI RAATTY 1 cut(s) 500
AcuI CTGAAG 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 140, 323
AgsI TTSAA 2 cut(s) 28, 408
AjnI CCWGG 2 cut(s) 63, 75
AluBI AGCT 4 cut(s) 6, 52, 92, 372
AluI AGCT 4 cut(s) 6, 52, 92, 372
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 3 cut(s) 174, 201, 371
AlwI GGATC 3 cut(s) 31, 110, 183
Ama87I CYCGRG 1 cut(s) 523
AoxI GGCC 3 cut(s) 41, 131, 507
ApoI RAATTY 1 cut(s) 500
ArsI GACNNNNNNTTYG 4 cut(s) 251, 283, 370, 402
AspLEI GCGC 1 cut(s) 82
AspS9I GGNCC 3 cut(s) 42, 131, 507
AsuHPI GGTGA 2 cut(s) 302, 338
AvaI CYCGRG 1 cut(s) 523
BanI GGYRCC 1 cut(s) 79
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 1 cut(s) 8
BccI CCATC 2 cut(s) 101, 435
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 65, 77
BcoDI GTCTC 3 cut(s) 174, 201, 371
BfoI RGCGCY 1 cut(s) 83
BglII AGATCT 2 cut(s) 148, 277
BisI GCNGC 1 cut(s) 176
BlsI GCNGC 1 cut(s) 177
Bme1390I CCNGG 2 cut(s) 65, 77
BmeT110I CYCGRG 1 cut(s) 523
BmgT120I GGNCC 3 cut(s) 42, 131, 507
BmiI GGNNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 65, 77
BpiI GAAGAC 1 cut(s) 396
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 323
BseBI CCWGG 2 cut(s) 65, 77
BseDI CCNNGG 1 cut(s) 75
BseGI GGATG 2 cut(s) 162, 413
BseLI CCNNNNNNNGG 2 cut(s) 140, 323
BseMII CTCAG 3 cut(s) 128, 143, 432
BshFI GGCC 3 cut(s) 43, 133, 509
BshNI GGYRCC 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 2 cut(s) 40, 317
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 2 cut(s) 140, 323
BsmAI GTCTC 3 cut(s) 174, 201, 371
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 3 cut(s) 43, 133, 509
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 6 cut(s) 36, 115, 148, 188, 277, 410
BspACI CCGC 2 cut(s) 175, 178
BspANI GGCC 3 cut(s) 43, 133, 509
BspCNI CTCAG 3 cut(s) 129, 144, 431
BspLI GGNNCC 1 cut(s) 81
BspPI GGATC 3 cut(s) 31, 110, 183
BspT107I GGYRCC 1 cut(s) 79
BssECI CCNNGG 1 cut(s) 75
BssMI GATC 6 cut(s) 36, 115, 148, 188, 277, 410
BssNI GRCGYC 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 65, 77
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 90
BstDEI CTNAG 3 cut(s) 137, 152, 418
BstF5I GGATG 2 cut(s) 162, 413
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 6 cut(s) 39, 118, 151, 191, 280, 413
BstMAI GTCTC 3 cut(s) 174, 201, 371
BstMBI GATC 6 cut(s) 36, 115, 148, 188, 277, 410
BstMWI GCNNNNNNNGC 2 cut(s) 49, 79
BstNI CCWGG 2 cut(s) 65, 77
BstNSI RCATGY 1 cut(s) 214
BstSCI CCNGG 2 cut(s) 63, 75
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 4 cut(s) 36, 148, 188, 277
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 4 cut(s) 36, 148, 188, 277
BsuRI GGCC 3 cut(s) 43, 133, 509
BtsCI GGATG 2 cut(s) 162, 413
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 90
CfoI GCGC 1 cut(s) 82
Cfr13I GGNCC 3 cut(s) 42, 131, 507
CviAII CATG 3 cut(s) 46, 193, 211
DdeI CTNAG 3 cut(s) 137, 152, 418
DinI GGCGCC 1 cut(s) 81
DpnI GATC 6 cut(s) 38, 117, 150, 190, 279, 412
DpnII GATC 6 cut(s) 36, 115, 148, 188, 277, 410
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 302
Eco88I CYCGRG 1 cut(s) 523
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 2 cut(s) 63, 75
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
FaeI CATG 3 cut(s) 49, 196, 214
FaiI YATR 3 cut(s) 47, 194, 212
FaqI GGGAC 1 cut(s) 176
FatI CATG 3 cut(s) 45, 192, 210
Fnu4HI GCNGC 1 cut(s) 176
FokI GGATG 2 cut(s) 169, 400
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 176
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 176
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 3 cut(s) 43, 133, 509
HapII CCGG 2 cut(s) 40, 317
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 3 cut(s) 49, 196, 214
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HpaII CCGG 2 cut(s) 40, 317
HphI GGTGA 2 cut(s) 302, 338
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 4 cut(s) 153, 201, 282, 453
Hpy188III TCNNGA 3 cut(s) 25, 408, 523
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 277, 396, 476
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 79
HpyF3I CTNAG 3 cut(s) 137, 152, 418
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 3 cut(s) 49, 196, 214
HspAI GCGC 1 cut(s) 80
KasI GGCGCC 1 cut(s) 79
Kzo9I GATC 6 cut(s) 36, 115, 148, 188, 277, 410
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 8 cut(s) 50, 53, 62, 77, 89, 330, 454, 490
MaeIII GTNAC 1 cut(s) 491
MalI GATC 6 cut(s) 38, 117, 150, 190, 279, 412
MboI GATC 6 cut(s) 36, 115, 148, 188, 277, 410
MboII GAAGA 8 cut(s) 116, 313, 316, 319, 322, 371, 396, 438
MflI RGATCY 4 cut(s) 36, 148, 188, 277
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 500
Mly113I GGCGCC 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 403
MspI CCGG 2 cut(s) 40, 317
MspR9I CCNGG 2 cut(s) 65, 77
MvaI CCWGG 2 cut(s) 65, 77
MwoI GCNNNNNNNGC 2 cut(s) 49, 79
NarI GGCGCC 1 cut(s) 80
NdeII GATC 6 cut(s) 36, 115, 148, 188, 277, 410
NlaIII CATG 3 cut(s) 49, 196, 214
NlaIV GGNNCC 1 cut(s) 81
NspI RCATGY 1 cut(s) 214
PaeR7I CTCGAG 1 cut(s) 523
PkrI GCNGC 1 cut(s) 177
PluTI GGCGCC 1 cut(s) 83
Psp124BI GAGCTC 1 cut(s) 8
Psp6I CCWGG 2 cut(s) 63, 75
PspGI CCWGG 2 cut(s) 63, 75
PspN4I GGNNCC 1 cut(s) 81
PspPI GGNCC 3 cut(s) 42, 131, 507
PsuI RGATCY 4 cut(s) 36, 148, 188, 277
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 1 cut(s) 176
Sau3AI GATC 6 cut(s) 36, 115, 148, 188, 277, 410
Sau96I GGNCC 3 cut(s) 42, 131, 507
ScrFI CCNGG 2 cut(s) 65, 77
SduI GDGCHC 1 cut(s) 8
SetI ASST 5 cut(s) 8, 54, 66, 94, 374
SfoI GGCGCC 1 cut(s) 81
Sfr274I CTCGAG 1 cut(s) 523
SlaI CTCGAG 1 cut(s) 523
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
Sse9I AATT 1 cut(s) 500
SsiI CCGC 2 cut(s) 175, 178
SspDI GGCGCC 1 cut(s) 79
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 2 cut(s) 63, 75
TaqI TCGA 3 cut(s) 123, 434, 524
TasI AATT 1 cut(s) 500
TauI GCSGC 1 cut(s) 178
TscAI CASTG 1 cut(s) 141
TspDTI ATGAA 3 cut(s) 62, 258, 558
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 500
XceI RCATGY 1 cut(s) 214
XhoI CTCGAG 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.