RchiOBHm_Chr1g0359611

Polyketide cyclase / dehydrase and lipid transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001280
Physical Location & Seq
Forward (+)
51522230 .. 51522884
655 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 603 bp
ATGAAGAGCGAAGACTCGTTTGTATATTTATTACTTTGCTTCACATTATTTCGCTTGTTTCTGTTAAATTCTCTCATGGAGGAAGAAAGCCAGCTACCCAAATGGGAAGGCAAAACGTCAGCTGAGCTGAAAGGCCCGGCAGCAGAAGAAGTTTGGCCTCTCTTGGCAGATTTCTGCAACATACATAAGTGGTTCCAAAGTCTTGAGACCAGTTATCATGTGGAGGGAGTCCCCGGCCAACCTGGCCTGGTTCGCTACTGCGGGCACCGTGACCATGATGATGACGAAGATGATCAGACGTCGGACACGATCAAGTTCTCAGCTAAAGAGAAGCTACTGATGATCGATCCAGTCAGGCGGTGTTTGAGCTACGAGATACTTGACAACAACTGGGGGCTCAAGTCATATGTTGCAACCATGCAAGTATTGGATCTGGATGGGAATAACGACCAAAGCCGCCGCGGGTGCAAGATTGAGTGGTCGTTTGTTTGTGATCCGATTGAGGGATGGAGGTTTGGAGATTACGTATCTCTTCTCGACTCTTGTCTGCTATCCATGGCAAAAAAGATGGAGCATGATGCCTTTCCATCTACTACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

200

Amino Acids

23.01

Weight (kDa)

4.69

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 47 - 173 3e-15 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 264
AccII CGCG 1 cut(s) 462
AciI CCGC 5 cut(s) 261, 358, 457, 460, 462
AclWI GGATC 3 cut(s) 341, 438, 488
AcoI YGGCCR 1 cut(s) 235
AcsI RAATTY 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 299
AfiI CCNNNNNNNGG 1 cut(s) 503
AjnI CCWGG 2 cut(s) 241, 246
AluBI AGCT 7 cut(s) 94, 122, 127, 323, 334, 369, 600
AluI AGCT 7 cut(s) 94, 122, 127, 323, 334, 369, 600
Alw26I GTCTC 1 cut(s) 200
AlwI GGATC 3 cut(s) 341, 438, 488
AoxI GGCC 4 cut(s) 133, 155, 235, 244
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 2 cut(s) 137, 234
BaeGI GKGCMC 1 cut(s) 267
BanI GGYRCC 1 cut(s) 264
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 152
BccI CCATC 4 cut(s) 431, 501, 562, 595
BciT130I CCWGG 2 cut(s) 243, 248
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 2 cut(s) 137, 234
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 2 cut(s) 597, 601
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 3 cut(s) 141, 457, 460
BlpI GCTNAGC 1 cut(s) 123
BlsI GCNGC 3 cut(s) 142, 458, 461
Bme1390I CCNGG 4 cut(s) 137, 234, 243, 248
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 2 cut(s) 194, 266
BmrFI CCNGG 4 cut(s) 137, 234, 243, 248
BmrI ACTGGG 1 cut(s) 400
BmsI GCATC 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 400
BoxI GACNNNNGTC 1 cut(s) 543
BpiI GAAGAC 1 cut(s) 18
Bpu1102I GCTNAGC 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 224, 383
BpuMI CCSGG 2 cut(s) 137, 234
Bsa29I ATCGAT 1 cut(s) 345
BsaAI YACGTR 1 cut(s) 526
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 3 cut(s) 232, 460, 555
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 503
Bse1I ACTGG 3 cut(s) 210, 350, 395
BseBI CCWGG 2 cut(s) 243, 248
BseCI ATCGAT 1 cut(s) 345
BseDI CCNNGG 3 cut(s) 232, 460, 555
BseGI GGATG 2 cut(s) 442, 512
BseLI CCNNNNNNNGG 1 cut(s) 503
BseMII CTCAG 2 cut(s) 114, 333
BseNI ACTGG 3 cut(s) 210, 350, 395
BseSI GKGCMC 1 cut(s) 267
BseXI GCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 462
BshFI GGCC 4 cut(s) 135, 157, 237, 246
BshNI GGYRCC 1 cut(s) 264
BshVI ATCGAT 1 cut(s) 345
BsiSI CCGG 2 cut(s) 137, 234
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 200
BsmFI GGGAC 1 cut(s) 215
BsnI GGCC 4 cut(s) 135, 157, 237, 246
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 267, 399
Bsp143I GATC 6 cut(s) 292, 309, 342, 346, 430, 493
Bsp1720I GCTNAGC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 555
BspACI CCGC 5 cut(s) 261, 358, 457, 460, 462
BspANI GGCC 4 cut(s) 135, 157, 237, 246
BspCNI CTCAG 2 cut(s) 115, 332
BspDI ATCGAT 1 cut(s) 345
BspFNI CGCG 1 cut(s) 462
BspLI GGNNCC 2 cut(s) 194, 266
BspPI GGATC 3 cut(s) 341, 438, 488
BspT107I GGYRCC 1 cut(s) 264
BspTNI GGTCTC 1 cut(s) 200
BsrI ACTGG 3 cut(s) 210, 350, 395
BssECI CCNNGG 3 cut(s) 232, 460, 555
BssMI GATC 6 cut(s) 292, 309, 342, 346, 430, 493
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 243, 248
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 537
BstACI GRCGYC 1 cut(s) 299
BstBAI YACGTR 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 92, 263
BstDEI CTNAG 2 cut(s) 123, 319
BstDSI CCRYGG 2 cut(s) 460, 555
BstF5I GGATG 2 cut(s) 442, 512
BstFNI CGCG 1 cut(s) 462
BstKTI GATC 6 cut(s) 295, 312, 345, 349, 433, 496
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 6 cut(s) 292, 309, 342, 346, 430, 493
BstMWI GCNNNNNNNGC 3 cut(s) 243, 252, 465
BstNI CCWGG 2 cut(s) 243, 248
BstPAI GACNNNNGTC 1 cut(s) 543
BstSCI CCNGG 4 cut(s) 135, 232, 241, 246
BstSLI GKGCMC 1 cut(s) 267
BstSNI TACGTA 1 cut(s) 526
BstUI CGCG 1 cut(s) 462
BstV1I GCAGC 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
Bsu15I ATCGAT 1 cut(s) 345
BsuRI GGCC 4 cut(s) 135, 157, 237, 246
BsuTUI ATCGAT 1 cut(s) 345
BtgI CCRYGG 2 cut(s) 460, 555
BtsCI GGATG 2 cut(s) 442, 512
Cac8I GCNNGC 2 cut(s) 92, 263
Cfr13I GGNCC 1 cut(s) 134
Cfr42I CCGCGG 1 cut(s) 463
ClaI ATCGAT 1 cut(s) 345
CviAII CATG 6 cut(s) 76, 218, 275, 418, 556, 575
DdeI CTNAG 2 cut(s) 123, 319
DpnI GATC 6 cut(s) 294, 311, 344, 348, 432, 495
DpnII GATC 6 cut(s) 292, 309, 342, 346, 430, 493
EaeI YGGCCR 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 537
EarI CTCTTC 1 cut(s) 537
Eco105I TACGTA 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 399
Eco31I GGTCTC 1 cut(s) 200
EcoRII CCWGG 2 cut(s) 241, 246
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 6 cut(s) 79, 221, 278, 421, 559, 578
FaqI GGGAC 1 cut(s) 215
FatI CATG 6 cut(s) 75, 217, 274, 417, 555, 574
FauI CCCGC 2 cut(s) 254, 455
FauNDI CATATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 3 cut(s) 141, 457, 460
FokI GGATG 2 cut(s) 449, 519
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 3 cut(s) 141, 457, 460
FspBI CTAG 2 cut(s) 597, 601
GluI GCNGC 3 cut(s) 141, 457, 460
HaeIII GGCC 4 cut(s) 135, 157, 237, 246
HapII CCGG 2 cut(s) 137, 234
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 6 cut(s) 79, 221, 278, 421, 559, 578
HinfI GANTC 3 cut(s) 14, 228, 539
HpaII CCGG 2 cut(s) 137, 234
Hpy188I TCNGA 3 cut(s) 297, 304, 498
Hpy188III TCNNGA 3 cut(s) 203, 434, 536
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 3 cut(s) 116, 299, 525
HpyCH4V TGCA 4 cut(s) 177, 413, 421, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 243, 252, 465
HpyF3I CTNAG 2 cut(s) 123, 319
HpySE526I ACGT 3 cut(s) 116, 299, 525
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 6 cut(s) 79, 221, 278, 421, 559, 578
Ksp22I TGATCA 1 cut(s) 292
KspI CCGCGG 1 cut(s) 463
Kzo9I GATC 6 cut(s) 292, 309, 342, 346, 430, 493
LmnI GCTCC 1 cut(s) 571
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 568
MaeI CTAG 2 cut(s) 597, 601
MaeII ACGT 3 cut(s) 116, 299, 525
MaeIII GTNAC 1 cut(s) 269
MalI GATC 6 cut(s) 294, 311, 344, 348, 432, 495
MboI GATC 6 cut(s) 292, 309, 342, 346, 430, 493
MboII GAAGA 6 cut(s) 16, 23, 95, 158, 299, 524
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 267, 399
MluCI AATT 1 cut(s) 67
MlyI GAGTC 3 cut(s) 8, 237, 533
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 5 cut(s) 73, 168, 217, 496, 504
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 279
MspA1I CMGCKG 2 cut(s) 122, 462
MspI CCGG 2 cut(s) 137, 234
MspR9I CCNGG 4 cut(s) 137, 234, 243, 248
MvaI CCWGG 2 cut(s) 243, 248
MvnI CGCG 1 cut(s) 462
MwoI GCNNNNNNNGC 3 cut(s) 243, 252, 465
NciI CCSGG 2 cut(s) 137, 234
NcoI CCATGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 406
NdeII GATC 6 cut(s) 292, 309, 342, 346, 430, 493
NlaIII CATG 6 cut(s) 79, 221, 278, 421, 559, 578
NlaIV GGNNCC 2 cut(s) 194, 266
NmuCI GTSAC 1 cut(s) 269
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PkrI GCNGC 3 cut(s) 142, 458, 461
PleI GAGTC 3 cut(s) 8, 236, 533
PpsI GAGTC 3 cut(s) 8, 236, 533
Ppu21I YACGTR 1 cut(s) 526
PshAI GACNNNNGTC 1 cut(s) 543
Psp6I CCWGG 2 cut(s) 241, 246
PspGI CCWGG 2 cut(s) 241, 246
PspN4I GGNNCC 2 cut(s) 194, 266
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 279
SacII CCGCGG 1 cut(s) 463
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 3 cut(s) 141, 457, 460
Sau3AI GATC 6 cut(s) 292, 309, 342, 346, 430, 493
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 3 cut(s) 8, 237, 533
ScrFI CCNGG 4 cut(s) 137, 234, 243, 248
SduI GDGCHC 2 cut(s) 267, 399
SfaNI GCATC 1 cut(s) 568
SfiI GGCCNNNNNGGCC 1 cut(s) 243
Sfr303I CCGCGG 1 cut(s) 463
SgrBI CCGCGG 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 2 cut(s) 203, 398
SmoI CTYRAG 2 cut(s) 203, 398
SnaBI TACGTA 1 cut(s) 526
Sse9I AATT 1 cut(s) 67
SsiI CCGC 5 cut(s) 261, 358, 457, 460, 462
SspMI CTAG 2 cut(s) 597, 601
StyD4I CCNGG 4 cut(s) 135, 232, 241, 246
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 3 cut(s) 119, 302, 528
TaqI TCGA 2 cut(s) 345, 537
TasI AATT 1 cut(s) 67
TauI GCSGC 2 cut(s) 459, 462
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 424
XspI CTAG 2 cut(s) 597, 601
ZraI GACGTC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.