Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000758

Physical Location & Seq

Genomic Coordinates Reverse (-)

63522579 .. 63528124

Gene Structure 5546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTGAGAGGGAAGATTGAGGTGAAAAGAATCGAAAATGCGACAAGCAGGCAGGTAGCCTTTTCGAAACGTCGAAACGGGCTGTTGAAGAAGGCTTTTGAGCTTTCGGTTCTTTGCGATGCCGAAGTTGCAGTCATCGTCTTTTCTCAGAAAAACAGGCTCTATGAGTTTTCTAGCTCCGACATGCAAAAGACTATAAAAAAATACCAAAAACATGCAAAAGGTGCGCTAACCAACACTACTGAAGTGGAACAGTATATGCAGCAATTGAAGCATGAATCAGCTGACATGGCCAAGAAGATTGAGACCCTAGAAGCTTCTCAACGGAGGCTTTTGGGACATGACTTGGATCCTTGCTCTGCTCAAGAAGTCAATCAGATGAGTAGCCAGCTCGAGCGAAGCTTGCGCAAAGTACGAGAGAGAAAGGATCAGCTATTAACGGAGCAGATAGAACGACTAAAAGCAAAGGAGAGGTTCCTCTTAGAAGAGAATGCAAAACTACACACACAGTGTGGTGCAAGGCCTTGTCAGAAACCTTTAGTTCAAGAAAAAGGAGTTGGGGCAGCAAGTTATAACTGGATGAATAGTAGTCAAAGTAGCAGCAGCCAAACAATTAATAATTCAGATCAGGTAGAGACTAGATTGTTCATCGGACCGCCAGTGATGCGCTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009791 GO:0009838 GO:0009889 GO:0009908 GO:0009909 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080187 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

225

Amino Acids

25.75

Weight (kDa)

9.43

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	3e-25	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 171	3.9e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000758)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165 AT5G62165
fragaria_vesca	FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740 FvH4_7g28740
malus_domestica	MD00G1004400.v1.1 MD00G1004600.v1.1 MD01G1193300.v1.1 MD01G1193500.v1.1 MD01G1193600.v1.1
prunus_persica	Prupe.2G287500_v2.0.a1
pyrus_communis	pycom01g20400 pycom01g20410 pycom07g23970
rosa_chinensis	RchiOBHm_Chr1g0376251 RchiOBHm_Chr1g0376271 RchiOBHm_Chr1g0376291
rosa_laevigata	RLG00000026614 RLG00000026615 RLG00000026616
rosa_multiflora	Rmu_co8488767.1_g000001 Rmu_ssc0000116.1_g000059 Rmu_ssc0000116.1_g000060
rosa_roxburghii	Rroxscaffold_4G00282230 Rroxscaffold_4G00282240 Rroxscaffold_4G00282270
rosa_rugosa	Rorug01G0394900 Rorug01G0395000
rosa_samantha	Rh1AG406300 Rh1AG406400 Rh1BG370100 Rh1BG370400 Rh1CG383000 Rh1CG383100 Rh1CG383200 Rh1DG399900 Rh1DG400200
rosa_wichuraiana	Rw1G036050 Rw1G036060 Rw1G036070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	573
Acc16I	TGCGCA	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	43
AciI	CCGC	1 cut(s)	656
AclWI	GGATC	3 cut(s)	344, 357, 435
AcoI	YGGCCR	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	264
AdeI	CACNNNGTG	2 cut(s)	510, 512
AfaI	GTAC	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	88, 271, 545
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
AluI	AGCT	7 cut(s)	103, 177, 284, 317, 391, 402, 433
Alw26I	GTCTC	2 cut(s)	299, 629
AlwI	GGATC	3 cut(s)	344, 357, 435
Ama87I	CYCGRG	1 cut(s)	392
AoxI	GGCC	2 cut(s)	291, 521
ApeKI	GCWGC	4 cut(s)	262, 563, 600, 603
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	3 cut(s)	229, 408, 669
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	2 cut(s)	16, 34
AsuII	TTCGAA	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	392
AvaII	GGWCC	1 cut(s)	653
BalI	TGGCCA	1 cut(s)	293
BamHI	GGATCC	1 cut(s)	349
BbvI	GCAGC	4 cut(s)	274, 575, 612, 615
BcoDI	GTCTC	2 cut(s)	299, 629
BfaI	CTAG	3 cut(s)	174, 311, 639
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	4 cut(s)	263, 564, 601, 604
BlsI	GCNGC	4 cut(s)	264, 565, 602, 605
Bme18I	GGWCC	1 cut(s)	653
BmeT110I	CYCGRG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	653
BmiI	GGNNCC	2 cut(s)	351, 476
BmsI	GCATC	2 cut(s)	109, 654
Bpu14I	TTCGAA	1 cut(s)	65
BpuEI	CTTGAG	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	299
Bse1I	ACTGG	2 cut(s)	581, 659
BseGI	GGATG	1 cut(s)	585
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	581, 659
BseXI	GCAGC	4 cut(s)	274, 575, 612, 615
BshFI	GGCC	2 cut(s)	293, 523
BsiHKCI	CYCGRG	1 cut(s)	392
BslFI	GGGAC	1 cut(s)	351
BsmAI	GTCTC	2 cut(s)	299, 629
BsmFI	GGGAC	1 cut(s)	351
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	2 cut(s)	293, 523
Bso31I	GGTCTC	1 cut(s)	299
BsoBI	CYCGRG	1 cut(s)	392
Bsp119I	TTCGAA	1 cut(s)	65
Bsp143I	GATC	3 cut(s)	349, 427, 625
BspACI	CCGC	1 cut(s)	656
BspANI	GGCC	2 cut(s)	293, 523
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	351, 476
BspMI	ACCTGC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	344, 357, 435
BspT104I	TTCGAA	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	581, 659
BssMI	GATC	3 cut(s)	349, 427, 625
Bst4CI	ACNGT	2 cut(s)	255, 510
Bst6I	CTCTTC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBI	TTCGAA	1 cut(s)	65
BstC8I	GCNNGC	3 cut(s)	50, 389, 404
BstDEI	CTNAG	2 cut(s)	147, 481
BstF5I	GGATG	1 cut(s)	585
BstHHI	GCGC	3 cut(s)	229, 408, 669
BstKTI	GATC	3 cut(s)	352, 430, 628
BstMAI	GTCTC	2 cut(s)	299, 629
BstMBI	GATC	3 cut(s)	349, 427, 625
BstMWI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 403, 664
BstNSI	RCATGY	2 cut(s)	187, 218
BstV1I	GCAGC	4 cut(s)	274, 575, 612, 615
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	293, 523
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	585
BtsIMutI	CAGTG	2 cut(s)	515, 666
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	50, 389, 404
CfoI	GCGC	3 cut(s)	229, 408, 669
Cfr13I	GGNCC	1 cut(s)	653
CpoI	CGGWCCG	1 cut(s)	653
Csp6I	GTAC	1 cut(s)	413
CspI	CGGWCCG	1 cut(s)	653
CviAII	CATG	5 cut(s)	184, 215, 275, 289, 341
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	147, 481
DpnI	GATC	3 cut(s)	351, 429, 627
DpnII	GATC	3 cut(s)	349, 427, 625
DraIII	CACNNNGTG	2 cut(s)	510, 512
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Eco147I	AGGCCT	1 cut(s)	523
Eco31I	GGTCTC	1 cut(s)	299
Eco47I	GGWCC	1 cut(s)	653
Eco57I	CTGAAG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	392
FaeI	CATG	5 cut(s)	187, 218, 278, 292, 344
FaqI	GGGAC	1 cut(s)	351
FatI	CATG	5 cut(s)	183, 214, 274, 288, 340
Fnu4HI	GCNGC	4 cut(s)	263, 564, 601, 604
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	4 cut(s)	263, 564, 601, 604
FspBI	CTAG	3 cut(s)	174, 311, 639
FspI	TGCGCA	1 cut(s)	407
GlaI	GCGC	3 cut(s)	228, 407, 668
GluI	GCNGC	4 cut(s)	263, 564, 601, 604
HaeIII	GGCC	2 cut(s)	293, 523
HhaI	GCGC	3 cut(s)	229, 408, 669
Hin1II	CATG	5 cut(s)	187, 218, 278, 292, 344
Hin6I	GCGC	3 cut(s)	227, 406, 667
HinP1I	GCGC	3 cut(s)	227, 406, 667
HindIII	AAGCTT	2 cut(s)	315, 400
HinfI	GANTC	2 cut(s)	30, 278
HphI	GGTGA	2 cut(s)	16, 34
Hpy188I	TCNGA	6 cut(s)	150, 181, 378, 531, 625, 653
Hpy188III	TCNNGA	2 cut(s)	365, 545
Hpy99I	CGWCG	1 cut(s)	75
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	255, 510
HpyCH4IV	ACGT	1 cut(s)	70
HpyCH4V	TGCA	6 cut(s)	131, 187, 218, 262, 494, 518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 403, 664
HpyF3I	CTNAG	2 cut(s)	147, 481
HpySE526I	ACGT	1 cut(s)	70
Hsp92II	CATG	5 cut(s)	187, 218, 278, 292, 344
HspAI	GCGC	3 cut(s)	227, 406, 667
Kzo9I	GATC	3 cut(s)	349, 427, 625
LmnI	GCTCC	2 cut(s)	182, 442
LpnPI	CCDG	7 cut(s)	34, 38, 142, 401, 562, 614, 672
Lsp1109I	GCAGC	4 cut(s)	274, 575, 612, 615
LweI	GCATC	2 cut(s)	109, 654
MaeI	CTAG	3 cut(s)	174, 311, 639
MaeII	ACGT	1 cut(s)	70
MalI	GATC	3 cut(s)	351, 429, 627
MboI	GATC	3 cut(s)	349, 427, 625
MboII	GAAGA	4 cut(s)	25, 100, 310, 497
MfeI	CAATTG	1 cut(s)	266
MflI	RGATCY	1 cut(s)	349
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	3 cut(s)	266, 612, 619
MluNI	TGGCCA	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	4 cut(s)	13, 321, 465, 488
Mox20I	TGGCCA	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	2 cut(s)	437, 615
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	284
MunI	CAATTG	1 cut(s)	266
Mva1269I	GAATGC	1 cut(s)	496
MwoI	GCNNNNNNNGC	6 cut(s)	128, 224, 271, 290, 403, 664
NdeII	GATC	3 cut(s)	349, 427, 625
NlaIII	CATG	5 cut(s)	187, 218, 278, 292, 344
NlaIV	GGNNCC	2 cut(s)	351, 476
NsbI	TGCGCA	1 cut(s)	407
NspI	RCATGY	2 cut(s)	187, 218
NspV	TTCGAA	1 cut(s)	65
PaeR7I	CTCGAG	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	523
PctI	GAATGC	1 cut(s)	496
PfeI	GAWTC	2 cut(s)	30, 278
PkrI	GCNGC	4 cut(s)	264, 565, 602, 605
PshBI	ATTAAT	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	573
PspN4I	GGNNCC	2 cut(s)	351, 476
PspPI	GGNCC	1 cut(s)	653
PspXI	VCTCGAGB	1 cut(s)	392
PsuI	RGATCY	1 cut(s)	349
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
Rsr2I	CGGWCCG	1 cut(s)	653
RsrII	CGGWCCG	1 cut(s)	653
SaqAI	TTAA	2 cut(s)	437, 615
SatI	GCNGC	4 cut(s)	263, 564, 601, 604
Sau3AI	GATC	3 cut(s)	349, 427, 625
Sau96I	GGNCC	1 cut(s)	653
SfaNI	GCATC	2 cut(s)	109, 654
Sfr274I	CTCGAG	1 cut(s)	392
SfuI	TTCGAA	1 cut(s)	65
SinI	GGWCC	1 cut(s)	653
SlaI	CTCGAG	1 cut(s)	392
SmlI	CTYRAG	2 cut(s)	363, 392
SmoI	CTYRAG	2 cut(s)	363, 392
Sse9I	AATT	3 cut(s)	266, 612, 619
SseBI	AGGCCT	1 cut(s)	523
SsiI	CCGC	1 cut(s)	656
SspMI	CTAG	3 cut(s)	174, 311, 639
StuI	AGGCCT	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	255, 510
TaiI	ACGT	1 cut(s)	73
TaqI	TCGA	4 cut(s)	33, 65, 73, 393
TasI	AATT	3 cut(s)	266, 612, 619
TfiI	GAWTC	2 cut(s)	30, 278
Tru1I	TTAA	2 cut(s)	437, 615
Tru9I	TTAA	2 cut(s)	437, 615
TscAI	CASTG	2 cut(s)	515, 666
TseI	GCWGC	4 cut(s)	262, 563, 600, 603
TspDTI	ATGAA	3 cut(s)	291, 596, 637
TspGWI	ACGGA	2 cut(s)	340, 455
TspRI	CASTG	2 cut(s)	515, 666
VpaK11BI	GGWCC	1 cut(s)	653
VspI	ATTAAT	1 cut(s)	615
XceI	RCATGY	2 cut(s)	187, 218
XhoI	CTCGAG	1 cut(s)	392
XspI	CTAG	3 cut(s)	174, 311, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.