RchiOBHm_Chr0c19g0500161

Prohibitin-1

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_chinensis
Unknown
OG0001997
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 909 bp
ATGAGTAATATATTTAGTTGTGGAAGGAGAACTATGAATTTCAAGAACGTTAAGGTTCCTAAGGTTCCAGGAGGTGGTGCAGCTTCTGCCTTGATTAAGGTGGGAATCATTGGTGGGCTTGGCTTGTATGGAGTTGCCAACAGTCTATACAACGTCGAGGGAGGCATCGAGCCATTGTTTTCAACCGTATCATTGGTGTCAAAGACAAGCAAGGTTTATCCGGAGGGGACACACCTTATCATCCCATGGTTTGAGAGGCCGGTTATTTATGATGTTCGTGCCCGACCTCATCTGGTGGAGAGCACTTCTGGCAGCCGTGATCTCCAAATGGTGAAAATCGGGCTTAGAGTTCTTACTCGTCCAATATCAGACCAGCTGCCTACAGTATATCGAACTCTTGGTGAGAATTATAATGAGAGAGTCCTTCCTTCCATCGTTCATGAAACTTTGAAGGCTGTTGTTGCACAGTATAATGCCAGCCAGCTCATTACTCAGAGAGAGGCTGTTAGTAGGGAAATAAGGAAGATCTTGACTGAAAGGGCTACCAATTTCAACATTGCTCTGGATGATGTGTCAATTACCAGCCTTACTTTTGGGAGGGAGTTCACAGCTGCAATTGAGGCCAAACAGGTGGCTGCACAAGAAGCTGAGAGAGCTAAGTTTGTTGTGGAAAAGGCTGAGCAGGACAAGAGAAGTGCTATCATCAGAGCACAGGGTGAGGCCACAAGTGCCAAGCTGATTGGTGAAGCTATTGCGAACAACCCGGCATTCATCACACTGAGGAAGATTGAAGCTGCTAGAGAAATAGCACATACCATGGCAAATTCATCAAACAAGGTTTACTTGAGTTCCGATGATCTGCTGCTGAACCTTCAGGACTTGAACTTGGACGTGAGCAAGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

302

Amino Acids

33.14

Weight (kDa)

9.47

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 68 - 229 3.3e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AccB7I CCANNNNNTGG 1 cut(s) 74
AccIII TCCGGA 1 cut(s) 220
AclI AACGTT 1 cut(s) 48
AcsI RAATTY 2 cut(s) 37, 823
AcuI CTGAAG 1 cut(s) 857
AdeI CACNNNGTG 1 cut(s) 716
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 6 cut(s) 43, 183, 451, 553, 791, 883
AjiI CACGTC 1 cut(s) 892
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 9 cut(s) 83, 376, 484, 611, 647, 656, 736, 749, 794
AluI AGCT 9 cut(s) 83, 376, 484, 611, 647, 656, 736, 749, 794
Alw21I GWGCWC 2 cut(s) 305, 712
AlwNI CAGNNNCTG 1 cut(s) 86
Aor13HI TCCGGA 1 cut(s) 220
AoxI GGCC 3 cut(s) 257, 621, 720
ApeKI GCWGC 7 cut(s) 80, 312, 376, 611, 635, 794, 862
ApoI RAATTY 2 cut(s) 37, 823
AsuC2I CCSGG 1 cut(s) 764
AsuHPI GGTGA 4 cut(s) 343, 413, 728, 755
AxyI CCTNAGG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 283
Bbv12I GWGCWC 2 cut(s) 305, 712
BbvI GCAGC 7 cut(s) 92, 324, 363, 598, 622, 781, 849
BccI CCATC 1 cut(s) 440
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 1 cut(s) 69
BcnI CCSGG 1 cut(s) 764
BfaI CTAG 1 cut(s) 798
BfmI CTRYAG 1 cut(s) 381
BglII AGATCT 1 cut(s) 525
BisI GCNGC 7 cut(s) 81, 313, 377, 612, 636, 795, 863
BlpI GCTNAGC 1 cut(s) 678
BlsI GCNGC 7 cut(s) 82, 314, 378, 613, 637, 796, 864
Bme1390I CCNGG 2 cut(s) 69, 764
BmgBI CACGTC 1 cut(s) 892
BmiI GGNNCC 2 cut(s) 57, 66
BmrFI CCNGG 2 cut(s) 69, 764
BmsI GCATC 1 cut(s) 174
Bpu1102I GCTNAGC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 865
BpuMI CCSGG 1 cut(s) 764
BsaJI CCNNGG 2 cut(s) 245, 816
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 220
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 245, 816
BseGI GGATG 2 cut(s) 240, 571
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 4 cut(s) 506, 639, 669, 770
BseSI GKGCMC 1 cut(s) 283
BseXI GCAGC 7 cut(s) 92, 324, 363, 598, 622, 781, 849
BsgI GTGCAG 2 cut(s) 99, 621
BshFI GGCC 3 cut(s) 259, 623, 722
BsiHKAI GWGCWC 2 cut(s) 305, 712
BsiSI CCGG 3 cut(s) 221, 260, 764
BslFI GGGAC 1 cut(s) 241
BslI CCNNNNNNNGG 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 241
BsmI GAATGC 1 cut(s) 767
BsnI GGCC 3 cut(s) 259, 623, 722
Bsp1286I GDGCHC 3 cut(s) 283, 305, 712
Bsp13I TCCGGA 1 cut(s) 220
Bsp143I GATC 3 cut(s) 319, 525, 856
Bsp1720I GCTNAGC 1 cut(s) 678
Bsp19I CCATGG 2 cut(s) 245, 816
BspANI GGCC 3 cut(s) 259, 623, 722
BspCNI CTCAG 4 cut(s) 505, 640, 670, 771
BspEI TCCGGA 1 cut(s) 220
BspHI TCATGA 1 cut(s) 439
BspLI GGNNCC 2 cut(s) 57, 66
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 245, 816
BssMI GATC 3 cut(s) 319, 525, 856
BssT1I CCWWGG 2 cut(s) 245, 816
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 4 cut(s) 143, 187, 385, 468
BstAPI GCANNNNNTGC 1 cut(s) 86
BstC8I GCNNGC 2 cut(s) 478, 482
BstDEI CTNAG 7 cut(s) 60, 344, 492, 648, 657, 678, 779
BstDSI CCRYGG 2 cut(s) 245, 816
BstF5I GGATG 2 cut(s) 240, 571
BstKTI GATC 3 cut(s) 322, 528, 859
BstMBI GATC 3 cut(s) 319, 525, 856
BstMWI GCNNNNNNNGC 7 cut(s) 86, 309, 461, 620, 644, 653, 728
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 2 cut(s) 67, 762
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 283
BstV1I GCAGC 7 cut(s) 92, 324, 363, 598, 622, 781, 849
BstX2I RGATCY 1 cut(s) 525
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 1 cut(s) 525
Bsu36I CCTNAGG 1 cut(s) 60
BsuRI GGCC 3 cut(s) 259, 623, 722
BtgI CCRYGG 2 cut(s) 245, 816
BtrI CACGTC 1 cut(s) 892
BtsCI GGATG 2 cut(s) 240, 571
BtsIMutI CAGTG 1 cut(s) 776
Cac8I GCNNGC 2 cut(s) 478, 482
CaiI CAGNNNCTG 1 cut(s) 86
CciI TCATGA 1 cut(s) 439
Cfr10I RCCGGY 1 cut(s) 259
CviAII CATG 3 cut(s) 246, 440, 817
DdeI CTNAG 7 cut(s) 60, 344, 492, 648, 657, 678, 779
DpnI GATC 3 cut(s) 321, 527, 858
DpnII GATC 3 cut(s) 319, 525, 856
DraIII CACNNNGTG 1 cut(s) 716
Eco130I CCWWGG 2 cut(s) 245, 816
Eco57I CTGAAG 1 cut(s) 857
Eco81I CCTNAGG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 245, 816
ErhI CCWWGG 2 cut(s) 245, 816
FaeI CATG 3 cut(s) 249, 443, 820
FalI AAGNNNNNCTT 2 cut(s) 827, 859
FaqI GGGAC 1 cut(s) 241
FatI CATG 3 cut(s) 245, 439, 816
Fnu4HI GCNGC 7 cut(s) 81, 313, 377, 612, 636, 795, 863
FokI GGATG 2 cut(s) 227, 578
Fsp4HI GCNGC 7 cut(s) 81, 313, 377, 612, 636, 795, 863
FspBI CTAG 1 cut(s) 798
GluI GCNGC 7 cut(s) 81, 313, 377, 612, 636, 795, 863
HaeIII GGCC 3 cut(s) 259, 623, 722
HapII CCGG 3 cut(s) 221, 260, 764
Hin1II CATG 3 cut(s) 249, 443, 820
HinfI GANTC 2 cut(s) 105, 420
HpaII CCGG 3 cut(s) 221, 260, 764
HphI GGTGA 4 cut(s) 343, 413, 728, 755
Hpy166II GTNNAC 2 cut(s) 606, 841
Hpy188I TCNGA 4 cut(s) 370, 495, 707, 853
Hpy188III TCNNGA 6 cut(s) 43, 221, 440, 529, 563, 875
Hpy8I GTNNAC 2 cut(s) 606, 841
Hpy99I CGWCG 1 cut(s) 158
HpyAV CCTTC 5 cut(s) 18, 434, 438, 445, 881
HpyCH4III ACNGT 4 cut(s) 143, 187, 385, 468
HpyCH4IV ACGT 3 cut(s) 48, 153, 891
HpyCH4V TGCA 4 cut(s) 80, 464, 614, 638
HpyF10VI GCNNNNNNNGC 7 cut(s) 86, 309, 461, 620, 644, 653, 728
HpyF3I CTNAG 7 cut(s) 60, 344, 492, 648, 657, 678, 779
HpySE526I ACGT 3 cut(s) 48, 153, 891
Hsp92II CATG 3 cut(s) 249, 443, 820
Kpn2I TCCGGA 1 cut(s) 220
Kzo9I GATC 3 cut(s) 319, 525, 856
Lsp1109I GCAGC 7 cut(s) 92, 324, 363, 598, 622, 781, 849
LweI GCATC 1 cut(s) 174
MaeI CTAG 1 cut(s) 798
MaeII ACGT 3 cut(s) 48, 153, 891
MalI GATC 3 cut(s) 321, 527, 858
MboI GATC 3 cut(s) 319, 525, 856
MboII GAAGA 2 cut(s) 535, 796
MfeI CAATTG 1 cut(s) 615
MflI RGATCY 1 cut(s) 525
MhlI GDGCHC 3 cut(s) 283, 305, 712
MluCI AATT 6 cut(s) 37, 406, 547, 576, 615, 823
MlyI GAGTC 1 cut(s) 429
MroI TCCGGA 1 cut(s) 220
MseI TTAA 2 cut(s) 51, 96
MspA1I CMGCKG 2 cut(s) 376, 611
MspI CCGG 3 cut(s) 221, 260, 764
MspR9I CCNGG 2 cut(s) 69, 764
MunI CAATTG 1 cut(s) 615
Mva1269I GAATGC 1 cut(s) 767
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 7 cut(s) 86, 309, 461, 620, 644, 653, 728
NciI CCSGG 1 cut(s) 764
NcoI CCATGG 2 cut(s) 245, 816
NdeII GATC 3 cut(s) 319, 525, 856
NlaIII CATG 3 cut(s) 249, 443, 820
NlaIV GGNNCC 2 cut(s) 57, 66
PagI TCATGA 1 cut(s) 439
PctI GAATGC 1 cut(s) 767
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 7 cut(s) 82, 314, 378, 613, 637, 796, 864
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
PsiI TTATAA 1 cut(s) 411
Psp1406I AACGTT 1 cut(s) 48
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 57, 66
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 525
PvuII CAGCTG 2 cut(s) 376, 611
SaqAI TTAA 2 cut(s) 51, 96
SatI GCNGC 7 cut(s) 81, 313, 377, 612, 636, 795, 863
Sau3AI GATC 3 cut(s) 319, 525, 856
SchI GAGTC 1 cut(s) 429
ScrFI CCNGG 2 cut(s) 69, 764
SduI GDGCHC 3 cut(s) 283, 305, 712
SfaNI GCATC 1 cut(s) 174
SfcI CTRYAG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 844
SmoI CTYRAG 1 cut(s) 844
Sse9I AATT 6 cut(s) 37, 406, 547, 576, 615, 823
SspMI CTAG 1 cut(s) 798
StyD4I CCNGG 2 cut(s) 67, 762
StyI CCWWGG 2 cut(s) 245, 816
TaaI ACNGT 4 cut(s) 143, 187, 385, 468
TaiI ACGT 3 cut(s) 51, 156, 894
TaqI TCGA 3 cut(s) 156, 168, 391
TasI AATT 6 cut(s) 37, 406, 547, 576, 615, 823
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 2 cut(s) 51, 96
Tru9I TTAA 2 cut(s) 51, 96
TscAI CASTG 1 cut(s) 783
TseI GCWGC 7 cut(s) 80, 312, 376, 611, 635, 794, 862
TspDTI ATGAA 5 cut(s) 50, 428, 456, 760, 816
TspRI CASTG 1 cut(s) 783
Van91I CCANNNNNTGG 1 cut(s) 74
XapI RAATTY 2 cut(s) 37, 823
XspI CTAG 1 cut(s) 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.