RchiOBHm_Chr2g0099351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004878
Physical Location & Seq
Reverse (-)
11569926 .. 11570327
402 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47407

Sequence Viewer

Length: 402 bp
ATGGCAATCGCCTACAACTCTTGGAAAATAAAAAGACTTAATCAAAATCGCCAGTTTCTGGGTCTTGATCCTTGTAGTCTTCCACCCTTAGATCTAGATCGCCATCTTGATCTTCTTGTGCCATGTAATTCGCTTCCCTTGCTTCACGATACGTCTTGTATGCGTTTGCAACATTCTGGGGTGCGGTACATGTTTTGGCCCAATGTTCAGTTGATCCACATCGAAAACAAACATCATTATGGTCAGGCTCCCTTGATCGAGGCGCCATTGGGGCGCAATTTGGACGACCTATCCTCTTGGTGGCGTTACCACCATGGTCGGAGGCTCCGCCTCTCTCTCTCTTCACACGTTGACCTCTACGGTTCCGTGCACGCCTCTCTTGGCGATTTCCTTCCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

15.44

Weight (kDa)

8.55

Isoelectric Point (pI)

52.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 262
AccB7I CCANNNNNTGG 1 cut(s) 58
AciI CCGC 2 cut(s) 184, 328
AclWI GGATC 2 cut(s) 62, 208
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 2 cut(s) 58, 300
AflIII ACRYGT 2 cut(s) 189, 346
Alw21I GWGCWC 1 cut(s) 372
Alw44I GTGCAC 1 cut(s) 368
AlwI GGATC 2 cut(s) 62, 208
AlwNI CAGNNNCTG 1 cut(s) 58
AoxI GGCC 1 cut(s) 197
ApaLI GTGCAC 1 cut(s) 368
AspLEI GCGC 2 cut(s) 265, 276
AspS9I GGNCC 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 262
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 372
BccI CCATC 1 cut(s) 111
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 266
BglI GCCNNNNNGGC 1 cut(s) 271
BglII AGATCT 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 4 cut(s) 249, 264, 326, 364
BpiI GAAGAC 1 cut(s) 71
BsaBI GATNNNNATC 3 cut(s) 96, 102, 218
BsaHI GRCGYC 1 cut(s) 263
BsaJI CCNNGG 1 cut(s) 313
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 300
Bse1I ACTGG 1 cut(s) 52
Bse8I GATNNNNATC 3 cut(s) 96, 102, 218
BseDI CCNNGG 1 cut(s) 313
BseJI GATNNNNATC 3 cut(s) 96, 102, 218
BseLI CCNNNNNNNGG 2 cut(s) 58, 300
BseNI ACTGG 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 372
BshFI GGCC 1 cut(s) 199
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 58, 300
BsnI GGCC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 6 cut(s) 67, 91, 97, 109, 213, 255
Bsp19I CCATGG 1 cut(s) 313
BspACI CCGC 2 cut(s) 184, 328
BspANI GGCC 1 cut(s) 199
BspLI GGNNCC 4 cut(s) 249, 264, 326, 364
BspPI GGATC 2 cut(s) 62, 208
BspT107I GGYRCC 1 cut(s) 262
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 313
BssMI GATC 6 cut(s) 67, 91, 97, 109, 213, 255
BssNI GRCGYC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 1 cut(s) 346
BstACI GRCGYC 1 cut(s) 263
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 88
BstDSI CCRYGG 1 cut(s) 313
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 2 cut(s) 265, 276
BstKTI GATC 6 cut(s) 70, 94, 100, 112, 216, 258
BstMBI GATC 6 cut(s) 67, 91, 97, 109, 213, 255
BstMWI GCNNNNNNNGC 2 cut(s) 139, 271
BstNSI RCATGY 1 cut(s) 193
BstSLI GKGCMC 1 cut(s) 372
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 91
BstYI RGATCY 1 cut(s) 91
BsuRI GGCC 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 372
CaiI CAGNNNCTG 1 cut(s) 58
CfoI GCGC 2 cut(s) 265, 276
Cfr13I GGNCC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 187
CviAII CATG 3 cut(s) 123, 190, 314
CviJI RGCY 3 cut(s) 199, 248, 325
CviKI_1 RGCY 3 cut(s) 199, 248, 325
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 1 cut(s) 88
DinI GGCGCC 1 cut(s) 264
DpnI GATC 6 cut(s) 69, 93, 99, 111, 215, 257
DpnII GATC 6 cut(s) 67, 91, 97, 109, 213, 255
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 313
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 313
FaeI CATG 3 cut(s) 126, 193, 317
FaiI YATR 5 cut(s) 124, 161, 191, 240, 315
FatI CATG 3 cut(s) 122, 189, 313
FspBI CTAG 1 cut(s) 95
GlaI GCGC 2 cut(s) 264, 275
HaeII RGCGCY 1 cut(s) 266
HaeIII GGCC 1 cut(s) 199
HhaI GCGC 2 cut(s) 265, 276
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 3 cut(s) 126, 193, 317
Hin6I GCGC 2 cut(s) 263, 274
HinP1I GCGC 2 cut(s) 263, 274
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
Hpy166II GTNNAC 2 cut(s) 352, 370
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 4 cut(s) 65, 95, 107, 146
Hpy8I GTNNAC 2 cut(s) 352, 370
HpyAV CCTTC 1 cut(s) 401
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 2 cut(s) 152, 348
HpyCH4V TGCA 2 cut(s) 169, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 271
HpyF3I CTNAG 1 cut(s) 88
HpySE526I ACGT 2 cut(s) 152, 348
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 3 cut(s) 126, 193, 317
HspAI GCGC 2 cut(s) 263, 274
KasI GGCGCC 1 cut(s) 262
Kzo9I GATC 6 cut(s) 67, 91, 97, 109, 213, 255
LmnI GCTCC 2 cut(s) 253, 330
LpnPI CCDG 4 cut(s) 44, 65, 162, 230
MaeI CTAG 1 cut(s) 95
MaeII ACGT 2 cut(s) 152, 348
MaeIII GTNAC 1 cut(s) 305
MalI GATC 6 cut(s) 69, 93, 99, 111, 215, 257
MboI GATC 6 cut(s) 67, 91, 97, 109, 213, 255
MboII GAAGA 3 cut(s) 71, 104, 333
MflI RGATCY 1 cut(s) 91
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 2 cut(s) 127, 277
Mly113I GGCGCC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 6 cut(s) 253, 304, 315, 341, 365, 385
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 139, 271
NarI GGCGCC 1 cut(s) 263
NcoI CCATGG 1 cut(s) 313
NdeII GATC 6 cut(s) 67, 91, 97, 109, 213, 255
NlaIII CATG 3 cut(s) 126, 193, 317
NlaIV GGNNCC 4 cut(s) 249, 264, 326, 364
NspI RCATGY 1 cut(s) 193
PciI ACATGT 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 58
PluTI GGCGCC 1 cut(s) 266
PscI ACATGT 1 cut(s) 189
PspN4I GGNNCC 4 cut(s) 249, 264, 326, 364
PspPI GGNCC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 91
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 6 cut(s) 67, 91, 97, 109, 213, 255
Sau96I GGNCC 1 cut(s) 198
SduI GDGCHC 1 cut(s) 372
SetI ASST 4 cut(s) 155, 291, 351, 357
SfoI GGCGCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 237
Sse9I AATT 2 cut(s) 127, 277
SsiI CCGC 2 cut(s) 184, 328
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 313
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 2 cut(s) 155, 351
TaqI TCGA 2 cut(s) 222, 258
TasI AATT 2 cut(s) 127, 277
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TspGWI ACGGA 1 cut(s) 355
Van91I CCANNNNNTGG 1 cut(s) 58
VneI GTGCAC 1 cut(s) 368
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 193
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.