Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004878

Physical Location & Seq

Genomic Coordinates Reverse (-)

59157903 .. 59158458

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGATATGGCATTGAAGGCCTCGGTAGCCTACAAAAATTGCAAGCGGTGTTTGAGGCTGTGCGGCGAACACCGGAATCAAAGCTGTTCGGATTCTGATATGTCGTCTAAGTTCCACTGCTCGTACCAGAGGACTGGCTGCTCGTATAAGAGGACTGGGAGCTCAAATTCGATGCTGAGGCAATGGGGGAAGGGGATGGAGAGCAGGCTGAAAGTGCTTTCAAGTGGCGATGGAGCATCCAGTAATGATTCACAACAGGTCTCCATTGTAAGGTTAGACGGCTCTCTTCTCTTTCGGTGTTTTTTTTTCCCTCCTTTAATTATTGAATTTCTAGTGTCGCATCTTGGTCTGTATGTTAGTGTGGTTCATGGTAGTTTTGGAGGTTTGGATTGGTTAATTGTGCCAACTTGGTCTCAGTTTTGTTTATATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

157

Amino Acids

17.52

Weight (kDa)

9.02

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0099351 RchiOBHm_Chr2g0103041 RchiOBHm_Chr2g0150881 RchiOBHm_Chr3g0495181 RchiOBHm_Chr4g0387961 RchiOBHm_Chr5g0055791 RchiOBHm_Chr7g0184561
rosa_laevigata	RLG00000001087 RLG00000012261 RLG00000014393 RLG00000030000
rosa_multiflora	Rmu_sc0006188.1_g000006 Rmu_sc0006493.1_g000021 Rmu_sc0032246.1_g000001 Rmu_sc0038175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034240 Rroxscaffold_4G00294030 Rroxscaffold_4G00295050 Rroxscaffold_6G00393460 Rroxscaffold_6G00417660 Rroxscaffold_6G00425110
rosa_rugosa	Rorug07G0313500
rosa_samantha	Rh1BG011700 Rh2AG245400 Rh3AG184600 Rh4CG286600 Rh5BG376400 Rh5CG399400 Rh7CG049100 Rh7CG068800 Rh7DG068200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	85, 102
AcsI	RAATTY	2 cut(s)	205, 365
AfaI	GTAC	1 cut(s)	164
AfiI	CCNNNNNNNGG	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	55, 261, 365
AluBI	AGCT	2 cut(s)	123, 201
AluI	AGCT	2 cut(s)	123, 201
Alw21I	GWGCWC	1 cut(s)	203
Alw26I	GTCTC	2 cut(s)	304, 456
AoxI	GGCC	2 cut(s)	18, 57
ApeKI	GCWGC	1 cut(s)	177
ApoI	RAATTY	2 cut(s)	205, 365
BanII	GRGCYC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	203
BbvCI	CCTCAGC	1 cut(s)	215
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	2 cut(s)	229, 263
BceAI	ACGGC	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	304, 456
BfaI	CTAG	1 cut(s)	371
BisI	GCNGC	2 cut(s)	103, 178
BlsI	GCNGC	2 cut(s)	104, 179
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	4 cut(s)	39, 201, 284, 388
BmuI	ACTGGG	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	215
BsaI	GGTCTC	2 cut(s)	304, 456
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse1I	ACTGG	3 cut(s)	178, 199, 279
Bse3DI	GCAATG	1 cut(s)	227
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	240, 275
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseMI	GCAATG	1 cut(s)	227
BseMII	CTCAG	2 cut(s)	206, 467
BseNI	ACTGG	3 cut(s)	178, 199, 279
BseXI	GCAGC	1 cut(s)	164
BshFI	GGCC	2 cut(s)	20, 59
BsiHKAI	GWGCWC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	2 cut(s)	304, 456
BsnI	GGCC	2 cut(s)	20, 59
Bso31I	GGTCTC	2 cut(s)	304, 456
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	85, 102
BspANI	GGCC	2 cut(s)	20, 59
BspCNI	CTCAG	2 cut(s)	207, 466
BspTNI	GGTCTC	2 cut(s)	304, 456
BsrDI	GCAATG	1 cut(s)	227
BsrI	ACTGG	3 cut(s)	178, 199, 279
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	36
Bst6I	CTCTTC	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	6, 83, 245
BstDEI	CTNAG	3 cut(s)	147, 215, 453
BstF5I	GGATG	2 cut(s)	240, 275
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	2 cut(s)	304, 456
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 65, 253
BstNSI	RCATGY	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	173
BsuRI	GGCC	2 cut(s)	20, 59
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	2 cut(s)	240, 275
BtsI	GCAGTG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	3 cut(s)	6, 83, 245
Csp6I	GTAC	1 cut(s)	163
CviAII	CATG	2 cut(s)	5, 407
CviJI	RGCY	9 cut(s)	20, 59, 68, 97, 123, 177, 201, 247, 321
CviKI_1	RGCY	9 cut(s)	20, 59, 68, 97, 123, 177, 201, 247, 321
CviQI	GTAC	1 cut(s)	163
DdeI	CTNAG	3 cut(s)	147, 215, 453
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
Ecl136II	GAGCTC	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	59
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	2 cut(s)	304, 456
Eco53kI	GAGCTC	1 cut(s)	201
EcoICRI	GAGCTC	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	2 cut(s)	8, 410
FaiI	YATR	8 cut(s)	6, 47, 140, 186, 393, 408, 466, 472
FatI	CATG	2 cut(s)	4, 406
Fnu4HI	GCNGC	2 cut(s)	103, 178
FokI	GGATG	2 cut(s)	247, 262
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	2 cut(s)	103, 178
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	2 cut(s)	103, 178
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	20, 59
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	8, 410
HinfI	GANTC	3 cut(s)	115, 131, 287
HpaII	CCGG	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	130, 136
Hpy188III	TCNNGA	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	49, 223
HpyCH4V	TGCA	3 cut(s)	4, 30, 81
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 65, 253
HpyF3I	CTNAG	3 cut(s)	147, 215, 453
Hsp92II	CATG	2 cut(s)	8, 410
Kzo9I	GATC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	198, 272
LpnPI	CCDG	7 cut(s)	125, 159, 179, 180, 229, 281, 292
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	4 cut(s)	39, 201, 284, 388
MaeI	CTAG	1 cut(s)	371
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	1 cut(s)	317
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	76, 205, 357, 365, 435
MnlI	CCTC	8 cut(s)	10, 70, 87, 162, 183, 210, 360, 413
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	356, 434
MspI	CCGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	56, 65, 253
NdeII	GATC	1 cut(s)	36
NlaIII	CATG	2 cut(s)	8, 410
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	115, 131, 287
PkrI	GCNGC	2 cut(s)	104, 179
Psp124BI	GAGCTC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	164
RsaNI	GTAC	1 cut(s)	163
SacI	GAGCTC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	356, 434
SatI	GCNGC	2 cut(s)	103, 178
Sau3AI	GATC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	125, 203, 300, 314, 424
SfaNI	GCATC	4 cut(s)	39, 201, 284, 388
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	5 cut(s)	76, 205, 357, 365, 435
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	2 cut(s)	85, 102
SspMI	CTAG	1 cut(s)	371
SstI	GAGCTC	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	209
TasI	AATT	5 cut(s)	76, 205, 357, 365, 435
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	3 cut(s)	115, 131, 287
Tru1I	TTAA	2 cut(s)	356, 434
Tru9I	TTAA	2 cut(s)	356, 434
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	1 cut(s)	177
TspDTI	ATGAA	2 cut(s)	395, 459
TspRI	CASTG	1 cut(s)	161
XapI	RAATTY	2 cut(s)	205, 365
XceI	RCATGY	1 cut(s)	8
XspI	CTAG	1 cut(s)	371
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.