Rh7CG049100

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004878
Physical Location & Seq
Forward (+)
3450293 .. 3451811
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG049100.1

Sequence Viewer

Length: 327 bp
ATGGATTTGGGAGCGGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGATATGGCATTGAAGGCCTCAGGAGTCTATAAAAACTGCAAGCCGTGTTCGAGACTGTGCGGCGAACACCGGAATAGGAATTGTTCGGATTCTGATATGTCGGCGAAGTTCCACTGCTCGTACCAGAGAACTGGGAGCTCAAATTCGACGCTGAGGCTATGGGGGAAGGAGATGGAGAGCAGGCTGAAAGCGCTTTCGAGTGGCGATGGAGCATCCAGTGATGATTCACAGCAGGTCTCCATTGTGAGATTAGAGGCACACATATCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

108

Amino Acids

11.7

Weight (kDa)

8.24

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 2 cut(s) 14, 114
AcsI RAATTY 1 cut(s) 196
AfaI GTAC 1 cut(s) 176
AfeI AGCGCT 1 cut(s) 246
AgsI TTSAA 1 cut(s) 67
AluBI AGCT 2 cut(s) 192, 323
AluI AGCT 2 cut(s) 192, 323
Alw21I GWGCWC 1 cut(s) 194
Alw26I GTCTC 2 cut(s) 100, 295
Aor51HI AGCGCT 1 cut(s) 246
AoxI GGCC 2 cut(s) 30, 69
ApoI RAATTY 1 cut(s) 196
AspLEI GCGC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 73
BanII GRGCYC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 194
BbvCI CCTCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 220, 254
BceAI ACGGC 1 cut(s) 82
BcoDI GTCTC 2 cut(s) 100, 295
BfoI RGCGCY 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 3 cut(s) 7, 51, 275
BmuI ACTGGG 1 cut(s) 195
BpmI CTGGAG 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 295
BsaWI WCCGGW 1 cut(s) 123
Bse1I ACTGG 2 cut(s) 190, 270
Bse21I CCTNAGG 1 cut(s) 73
BseGI GGATG 2 cut(s) 22, 266
BseMII CTCAG 2 cut(s) 87, 197
BseNI ACTGG 2 cut(s) 190, 270
BshFI GGCC 2 cut(s) 32, 71
BsiHKAI GWGCWC 1 cut(s) 194
BsiSI CCGG 1 cut(s) 124
BsmAI GTCTC 2 cut(s) 100, 295
BsnI GGCC 2 cut(s) 32, 71
Bso31I GGTCTC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 2 cut(s) 14, 114
BspANI GGCC 2 cut(s) 32, 71
BspCNI CTCAG 2 cut(s) 86, 198
BspMI ACCTGC 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 295
BsrBI CCGCTC 1 cut(s) 14
BsrI ACTGG 2 cut(s) 190, 270
BssMI GATC 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 111
BstC8I GCNNGC 2 cut(s) 95, 236
BstDEI CTNAG 2 cut(s) 73, 206
BstF5I GGATG 2 cut(s) 22, 266
BstH2I RGCGCY 1 cut(s) 248
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 2 cut(s) 100, 295
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 2 cut(s) 68, 244
BstXI CCANNNNNNTGG 1 cut(s) 185
Bsu36I CCTNAGG 1 cut(s) 73
BsuRI GGCC 2 cut(s) 32, 71
BtgZI GCGATG 1 cut(s) 273
BtsCI GGATG 2 cut(s) 22, 266
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 2 cut(s) 166, 277
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 95, 236
CfoI GCGC 1 cut(s) 247
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 7 cut(s) 32, 71, 97, 192, 211, 238, 323
CviKI_1 RGCY 7 cut(s) 32, 71, 97, 192, 211, 238, 323
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 2 cut(s) 73, 206
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 194
Eco31I GGTCTC 1 cut(s) 295
Eco47III AGCGCT 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 73
EcoICRI GAGCTC 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 194
FaiI YATR 5 cut(s) 59, 84, 152, 214, 317
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 2 cut(s) 29, 253
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 115
GlaI GCGC 1 cut(s) 246
GluI GCNGC 1 cut(s) 115
GsuI CTGGAG 1 cut(s) 42
HaeII RGCGCY 1 cut(s) 248
HaeIII GGCC 2 cut(s) 32, 71
HapII CCGG 1 cut(s) 124
HgaI GACGC 1 cut(s) 211
HhaI GCGC 1 cut(s) 247
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 3 cut(s) 78, 143, 278
HpaII CCGG 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 142, 148
Hpy188III TCNNGA 3 cut(s) 46, 75, 105
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 2 cut(s) 61, 214
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 42, 93
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 244
HpyF3I CTNAG 2 cut(s) 73, 206
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 3 cut(s) 11, 189, 263
LpnPI CCDG 8 cut(s) 6, 60, 137, 171, 191, 220, 272, 283
LweI GCATC 3 cut(s) 7, 51, 275
MalI GATC 1 cut(s) 50
MbiI CCGCTC 1 cut(s) 14
MboI GATC 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 2 cut(s) 133, 196
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 4 cut(s) 22, 82, 201, 301
MseI TTAA 1 cut(s) 325
MspI CCGG 1 cut(s) 124
MwoI GCNNNNNNNGC 2 cut(s) 68, 244
NdeII GATC 1 cut(s) 48
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 2 cut(s) 143, 278
PkrI GCNGC 1 cut(s) 116
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 194
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 48
SchI GAGTC 1 cut(s) 87
SduI GDGCHC 1 cut(s) 194
SetI ASST 3 cut(s) 194, 291, 325
SfaNI GCATC 3 cut(s) 7, 51, 275
Sse9I AATT 2 cut(s) 133, 196
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 14, 114
SstI GAGCTC 1 cut(s) 194
StuI AGGCCT 1 cut(s) 71
TaaI ACNGT 1 cut(s) 111
TaqI TCGA 3 cut(s) 104, 200, 251
TasI AATT 2 cut(s) 133, 196
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 143, 278
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 2 cut(s) 173, 277
TspRI CASTG 2 cut(s) 173, 277
XapI RAATTY 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.