RchiOBHm_Chr4g0387961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004878
Physical Location & Seq
Forward (+)
3107160 .. 3107457
298 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36123

Sequence Viewer

Length: 243 bp
ATGCGTTTGCAACATTCTGGGGTGCGGTACATGTTTTGGCCCAATGTTCAGTTGATCCACATCGAAAACAAACATCATTATGGTCAGGCTCCCTTGATCGAGGCGCCATTGGGGCGCGGTTTGGACGACCTATCCTCTTGGTGGCGTTACCACCATGGTCGGAGGCTCCGCCTCTCTCTCTCTTCACACGTTGACCTCTACGGTTCCGTGCACGCCTCTCTTGGCGATTTCCTTCCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.34

Weight (kDa)

9.39

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AccII CGCG 1 cut(s) 117
AciI CCGC 3 cut(s) 25, 117, 169
AclWI GGATC 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 104
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 141
AflIII ACRYGT 2 cut(s) 30, 187
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 49
AoxI GGCC 1 cut(s) 38
ApaLI GTGCAC 1 cut(s) 209
AspLEI GCGC 2 cut(s) 106, 117
AspS9I GGNCC 1 cut(s) 39
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 107
BglI GCCNNNNNGGC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 4 cut(s) 90, 105, 167, 205
BsaBI GATNNNNATC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 154
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 154
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 141
BseSI GKGCMC 1 cut(s) 213
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 40
BshNI GGYRCC 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 141
BsnI GGCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 2 cut(s) 54, 96
Bsp19I CCATGG 1 cut(s) 154
BspACI CCGC 3 cut(s) 25, 117, 169
BspANI GGCC 1 cut(s) 40
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 4 cut(s) 90, 105, 167, 205
BspPI GGATC 1 cut(s) 49
BspT107I GGYRCC 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 154
BssMI GATC 2 cut(s) 54, 96
BssNI GRCGYC 1 cut(s) 104
BssT1I CCWWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 203
Bst6I CTCTTC 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 213
BstDSI CCRYGG 1 cut(s) 154
BstFNI CGCG 1 cut(s) 117
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 2 cut(s) 106, 117
BstKTI GATC 2 cut(s) 57, 99
BstMBI GATC 2 cut(s) 54, 96
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 1 cut(s) 117
BsuRI GGCC 1 cut(s) 40
BtgI CCRYGG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 213
CfoI GCGC 2 cut(s) 106, 117
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 1 cut(s) 28
CviAII CATG 2 cut(s) 31, 155
CviJI RGCY 3 cut(s) 40, 89, 166
CviKI_1 RGCY 3 cut(s) 40, 89, 166
CviQI GTAC 1 cut(s) 28
DinI GGCGCC 1 cut(s) 105
DpnI GATC 2 cut(s) 56, 98
DpnII GATC 2 cut(s) 54, 96
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
EciI GGCGGA 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 154
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 154
FaeI CATG 2 cut(s) 34, 158
FaiI YATR 3 cut(s) 32, 81, 156
FatI CATG 2 cut(s) 30, 154
GlaI GCGC 2 cut(s) 105, 116
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 40
HhaI GCGC 2 cut(s) 106, 117
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 2 cut(s) 34, 158
Hin6I GCGC 2 cut(s) 104, 115
HinP1I GCGC 2 cut(s) 104, 115
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 193, 211
Hpy188I TCNGA 1 cut(s) 162
Hpy8I GTNNAC 2 cut(s) 193, 211
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 1 cut(s) 203
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 10, 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 1 cut(s) 189
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 34, 158
HspAI GCGC 2 cut(s) 104, 115
KasI GGCGCC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 54, 96
LmnI GCTCC 2 cut(s) 94, 171
LpnPI CCDG 2 cut(s) 3, 71
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 146
MalI GATC 2 cut(s) 56, 98
MboI GATC 2 cut(s) 54, 96
MboII GAAGA 1 cut(s) 174
MhlI GDGCHC 1 cut(s) 213
Mly113I GGCGCC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 6 cut(s) 94, 145, 156, 182, 206, 226
MslI CAYNNNNRTG 1 cut(s) 78
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 112
NarI GGCGCC 1 cut(s) 104
NcoI CCATGG 1 cut(s) 154
NdeII GATC 2 cut(s) 54, 96
NlaIII CATG 2 cut(s) 34, 158
NlaIV GGNNCC 4 cut(s) 90, 105, 167, 205
NspI RCATGY 1 cut(s) 34
PciI ACATGT 1 cut(s) 30
PluTI GGCGCC 1 cut(s) 107
PscI ACATGT 1 cut(s) 30
PspN4I GGNNCC 4 cut(s) 90, 105, 167, 205
PspPI GGNCC 1 cut(s) 39
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 78
Sau3AI GATC 2 cut(s) 54, 96
Sau96I GGNCC 1 cut(s) 39
SduI GDGCHC 1 cut(s) 213
SetI ASST 3 cut(s) 132, 192, 198
SfoI GGCGCC 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 78
SsiI CCGC 3 cut(s) 25, 117, 169
SspDI GGCGCC 1 cut(s) 103
StyI CCWWGG 1 cut(s) 154
TaaI ACNGT 1 cut(s) 203
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 63, 99
TspGWI ACGGA 1 cut(s) 196
VneI GTGCAC 1 cut(s) 209
XceI RCATGY 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.