Protein Brevis radix-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0099351 RchiOBHm_Chr2g0103041 RchiOBHm_Chr2g0150881 RchiOBHm_Chr3g0495181 RchiOBHm_Chr4g0387961 RchiOBHm_Chr5g0055791 RchiOBHm_Chr7g0184561 |
| rosa_laevigata | RLG00000001087 RLG00000012261 RLG00000014393 RLG00000030000 |
| rosa_multiflora | Rmu_sc0006188.1_g000006 Rmu_sc0006493.1_g000021 Rmu_sc0032246.1_g000001 Rmu_sc0038175.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00034240 Rroxscaffold_4G00294030 Rroxscaffold_4G00295050 Rroxscaffold_6G00393460 Rroxscaffold_6G00417660 Rroxscaffold_6G00425110 |
| rosa_rugosa | Rorug07G0313500 |
| rosa_samantha | Rh1BG011700 Rh2AG245400 Rh3AG184600 Rh4CG286600 Rh5BG376400 Rh5CG399400 Rh7CG049100 Rh7CG068800 Rh7DG068200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 75, 127 |
| AcsI | RAATTY | 2 cut(s) | 46, 176 |
| AfaI | GTAC | 2 cut(s) | 26, 189 |
| AfeI | AGCGCT | 1 cut(s) | 96 |
| AgsI | TTSAA | 2 cut(s) | 91, 194 |
| AluBI | AGCT | 1 cut(s) | 42 |
| AluI | AGCT | 1 cut(s) | 42 |
| Alw21I | GWGCWC | 1 cut(s) | 44 |
| Alw26I | GTCTC | 1 cut(s) | 145 |
| Aor51HI | AGCGCT | 1 cut(s) | 96 |
| AoxI | GGCC | 1 cut(s) | 59 |
| ApoI | RAATTY | 2 cut(s) | 46, 176 |
| AspLEI | GCGC | 1 cut(s) | 97 |
| BanII | GRGCYC | 1 cut(s) | 44 |
| Bbv12I | GWGCWC | 1 cut(s) | 44 |
| BbvCI | CCTCAGC | 1 cut(s) | 56 |
| BccI | CCATC | 2 cut(s) | 70, 104 |
| BcoDI | GTCTC | 1 cut(s) | 145 |
| BfoI | RGCGCY | 1 cut(s) | 98 |
| BfuAI | ACCTGC | 2 cut(s) | 75, 127 |
| BmcAI | AGTACT | 1 cut(s) | 189 |
| BmrI | ACTGGG | 1 cut(s) | 45 |
| BmsI | GCATC | 1 cut(s) | 125 |
| BmuI | ACTGGG | 1 cut(s) | 45 |
| Bpu10I | CCTNAGC | 1 cut(s) | 56 |
| BsaI | GGTCTC | 1 cut(s) | 145 |
| BsaJI | CCNNGG | 1 cut(s) | 62 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 71, 101 |
| Bse1I | ACTGG | 2 cut(s) | 40, 120 |
| BseDI | CCNNGG | 1 cut(s) | 62 |
| BseGI | GGATG | 2 cut(s) | 81, 116 |
| BseMII | CTCAG | 2 cut(s) | 47, 198 |
| BseNI | ACTGG | 2 cut(s) | 40, 120 |
| BshFI | GGCC | 1 cut(s) | 61 |
| BsiHKAI | GWGCWC | 1 cut(s) | 44 |
| BsmAI | GTCTC | 1 cut(s) | 145 |
| BsnI | GGCC | 1 cut(s) | 61 |
| Bso31I | GGTCTC | 1 cut(s) | 145 |
| Bsp1286I | GDGCHC | 1 cut(s) | 44 |
| Bsp19I | CCATGG | 1 cut(s) | 62 |
| BspANI | GGCC | 1 cut(s) | 61 |
| BspCNI | CTCAG | 2 cut(s) | 48, 197 |
| BspMI | ACCTGC | 2 cut(s) | 75, 127 |
| BspTNI | GGTCTC | 1 cut(s) | 145 |
| BsrI | ACTGG | 2 cut(s) | 40, 120 |
| BssECI | CCNNGG | 1 cut(s) | 62 |
| BssT1I | CCWWGG | 1 cut(s) | 62 |
| BstDEI | CTNAG | 2 cut(s) | 56, 184 |
| BstDSI | CCRYGG | 1 cut(s) | 62 |
| BstF5I | GGATG | 2 cut(s) | 81, 116 |
| BstH2I | RGCGCY | 1 cut(s) | 98 |
| BstHHI | GCGC | 1 cut(s) | 97 |
| BstMAI | GTCTC | 1 cut(s) | 145 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 35 |
| BsuRI | GGCC | 1 cut(s) | 61 |
| BtgI | CCRYGG | 1 cut(s) | 62 |
| BtgZI | GCGATG | 1 cut(s) | 123 |
| BtsCI | GGATG | 2 cut(s) | 81, 116 |
| BtsI | GCAGTG | 1 cut(s) | 16 |
| BtsIMutI | CAGTG | 1 cut(s) | 16 |
| BveI | ACCTGC | 2 cut(s) | 75, 127 |
| CfoI | GCGC | 1 cut(s) | 97 |
| CseI | GACGC | 1 cut(s) | 61 |
| Csp6I | GTAC | 2 cut(s) | 25, 188 |
| CviAII | CATG | 1 cut(s) | 63 |
| CviJI | RGCY | 2 cut(s) | 42, 61 |
| CviKI_1 | RGCY | 2 cut(s) | 42, 61 |
| CviQI | GTAC | 2 cut(s) | 25, 188 |
| DdeI | CTNAG | 2 cut(s) | 56, 184 |
| Ecl136II | GAGCTC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 1 cut(s) | 62 |
| Eco24I | GRGCYC | 1 cut(s) | 44 |
| Eco31I | GGTCTC | 1 cut(s) | 145 |
| Eco47III | AGCGCT | 1 cut(s) | 96 |
| Eco53kI | GAGCTC | 1 cut(s) | 42 |
| EcoICRI | GAGCTC | 1 cut(s) | 42 |
| EcoRI | GAATTC | 1 cut(s) | 46 |
| EcoT14I | CCWWGG | 1 cut(s) | 62 |
| EcoT38I | GRGCYC | 1 cut(s) | 44 |
| ErhI | CCWWGG | 1 cut(s) | 62 |
| FaeI | CATG | 1 cut(s) | 66 |
| FaiI | YATR | 4 cut(s) | 64, 209, 227, 232 |
| FatI | CATG | 1 cut(s) | 62 |
| FokI | GGATG | 2 cut(s) | 88, 103 |
| FriOI | GRGCYC | 1 cut(s) | 44 |
| GlaI | GCGC | 1 cut(s) | 96 |
| HaeII | RGCGCY | 1 cut(s) | 98 |
| HaeIII | GGCC | 1 cut(s) | 61 |
| HgaI | GACGC | 1 cut(s) | 61 |
| HhaI | GCGC | 1 cut(s) | 97 |
| Hin1II | CATG | 1 cut(s) | 66 |
| Hin6I | GCGC | 1 cut(s) | 95 |
| HinP1I | GCGC | 1 cut(s) | 95 |
| HinfI | GANTC | 1 cut(s) | 128 |
| Hpy99I | CGWCG | 2 cut(s) | 10, 55 |
| HpyAV | CCTTC | 1 cut(s) | 64 |
| HpyF3I | CTNAG | 2 cut(s) | 56, 184 |
| Hsp92II | CATG | 1 cut(s) | 66 |
| HspAI | GCGC | 1 cut(s) | 95 |
| LmnI | GCTCC | 2 cut(s) | 39, 113 |
| LpnPI | CCDG | 6 cut(s) | 21, 41, 70, 122, 133, 167 |
| LweI | GCATC | 1 cut(s) | 125 |
| MboII | GAAGA | 2 cut(s) | 142, 213 |
| MhlI | GDGCHC | 1 cut(s) | 44 |
| MluCI | AATT | 2 cut(s) | 46, 176 |
| MmeI | TCCRAC | 1 cut(s) | 227 |
| MnlI | CCTC | 2 cut(s) | 24, 51 |
| NcoI | CCATGG | 1 cut(s) | 62 |
| NlaIII | CATG | 1 cut(s) | 66 |
| PfeI | GAWTC | 1 cut(s) | 128 |
| Psp124BI | GAGCTC | 1 cut(s) | 44 |
| RsaI | GTAC | 2 cut(s) | 26, 189 |
| RsaNI | GTAC | 2 cut(s) | 25, 188 |
| SacI | GAGCTC | 1 cut(s) | 44 |
| ScaI | AGTACT | 1 cut(s) | 189 |
| SduI | GDGCHC | 1 cut(s) | 44 |
| SetI | ASST | 3 cut(s) | 44, 89, 141 |
| SfaNI | GCATC | 1 cut(s) | 125 |
| Sse9I | AATT | 2 cut(s) | 46, 176 |
| SstI | GAGCTC | 1 cut(s) | 44 |
| StyI | CCWWGG | 1 cut(s) | 62 |
| TaqI | TCGA | 3 cut(s) | 8, 44, 50 |
| TasI | AATT | 2 cut(s) | 46, 176 |
| TatI | WGTACW | 1 cut(s) | 187 |
| TfiI | GAWTC | 1 cut(s) | 128 |
| TscAI | CASTG | 1 cut(s) | 23 |
| TspRI | CASTG | 1 cut(s) | 23 |
| XapI | RAATTY | 2 cut(s) | 46, 176 |
| ZrmI | AGTACT | 1 cut(s) | 189 |