Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004878

Physical Location & Seq

Genomic Coordinates Reverse (-)

53116143 .. 53118145

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030000

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGCCAGAAGAAAGGACCCCCCGCTAAATGCACTCTCGAGTTTAAGAAACGCCGCCGCGTCGGTTTCTCCAGTGTCGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGATATGGCATTGAAGTTCTTGGGAGCCTACAAAAACTGCAAGCTGTGTTTGAGGCTGTGCGGCGACCACTGCTACCAAAACTGTTCGGATTCTGATATGTCGGCGAAGTTCCACTGCTCGTACCAGAGGACTGGGAGCTCGAATTCGACGCTGAGGCTATGGGGGAAGAAGATGGAGAGCAGGCCGAAAGCGCTTTCGAGTGGCGAAGGAGCATCCAGTGATGATTCACAGCAGGTTTCCATTGTGAGACTTTCCAGATCACTGGGGAACAACATGGGGGAGGGTTTCTGCACCTTATTCTGCACTAGTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

144

Amino Acids

15.66

Weight (kDa)

9.33

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0099351 RchiOBHm_Chr2g0103041 RchiOBHm_Chr2g0150881 RchiOBHm_Chr3g0495181 RchiOBHm_Chr4g0387961 RchiOBHm_Chr5g0055791 RchiOBHm_Chr7g0184561
rosa_laevigata	RLG00000001087 RLG00000012261 RLG00000014393 RLG00000030000
rosa_multiflora	Rmu_sc0006188.1_g000006 Rmu_sc0006493.1_g000021 Rmu_sc0032246.1_g000001 Rmu_sc0038175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034240 Rroxscaffold_4G00294030 Rroxscaffold_4G00295050 Rroxscaffold_6G00393460 Rroxscaffold_6G00417660 Rroxscaffold_6G00425110
rosa_rugosa	Rorug07G0313500
rosa_samantha	Rh1BG011700 Rh2AG245400 Rh3AG184600 Rh4CG286600 Rh5BG376400 Rh5CG399400 Rh7CG049100 Rh7CG068800 Rh7DG068200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccII	CGCG	1 cut(s)	60
AciI	CCGC	4 cut(s)	24, 55, 58, 177
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	239
AfeI	AGCGCT	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	130
AhlI	ACTAGT	1 cut(s)	422
AluBI	AGCT	2 cut(s)	160, 255
AluI	AGCT	2 cut(s)	160, 255
Alw21I	GWGCWC	1 cut(s)	257
Alw26I	GTCTC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	38
Aor51HI	AGCGCT	1 cut(s)	309
AoxI	GGCC	3 cut(s)	4, 93, 299
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	4, 17
AvaI	CYCGRG	1 cut(s)	38
AvaII	GGWCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	269
BccI	CCATC	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	358
BcuI	ACTAGT	1 cut(s)	422
BfaI	CTAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	340
BisI	GCNGC	3 cut(s)	55, 58, 178
BlsI	GCNGC	3 cut(s)	56, 59, 179
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	4, 17
BmiI	GGNNCC	2 cut(s)	19, 142
BmrI	ACTGGG	2 cut(s)	258, 389
BmsI	GCATC	3 cut(s)	70, 114, 338
BmuI	ACTGGG	2 cut(s)	258, 389
BpmI	CTGGAG	2 cut(s)	55, 105
Bpu10I	CCTNAGC	1 cut(s)	269
Bse1I	ACTGG	4 cut(s)	72, 253, 333, 384
BseGI	GGATG	1 cut(s)	329
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	4 cut(s)	72, 253, 333, 384
BsgI	GTGCAG	2 cut(s)	391, 403
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	6, 95, 301
BsiHKAI	GWGCWC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	38
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	3 cut(s)	6, 95, 301
BsoBI	CYCGRG	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	111, 374
BspACI	CCGC	4 cut(s)	24, 55, 58, 177
BspANI	GGCC	3 cut(s)	6, 95, 301
BspCNI	CTCAG	1 cut(s)	261
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	19, 142
BspMI	ACCTGC	1 cut(s)	340
BsrI	ACTGG	4 cut(s)	72, 253, 333, 384
BssMI	GATC	2 cut(s)	111, 374
Bst4CI	ACNGT	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	158, 299
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	60
BstH2I	RGCGCY	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	310
BstKTI	GATC	2 cut(s)	114, 377
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	2 cut(s)	111, 374
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 307
BstUI	CGCG	1 cut(s)	60
BstXI	CCANNNNNNTGG	2 cut(s)	248, 379
BsuRI	GGCC	3 cut(s)	6, 95, 301
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	2 cut(s)	184, 229
BtsIMutI	CAGTG	5 cut(s)	79, 184, 229, 340, 377
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	158, 299
CfoI	GCGC	1 cut(s)	310
Cfr13I	GGNCC	2 cut(s)	4, 17
CseI	GACGC	2 cut(s)	49, 274
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	391
CviJI	RGCY	8 cut(s)	6, 95, 143, 160, 172, 255, 274, 301
CviKI_1	RGCY	8 cut(s)	6, 95, 143, 160, 172, 255, 274, 301
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	113, 376
DpnII	GATC	2 cut(s)	111, 374
Ecl136II	GAGCTC	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	17
Eco47III	AGCGCT	1 cut(s)	309
Eco53kI	GAGCTC	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	257
FaeI	CATG	1 cut(s)	394
FaiI	YATR	4 cut(s)	122, 215, 277, 392
FatI	CATG	1 cut(s)	390
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	55, 58, 178
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	55, 58, 178
FspBI	CTAG	1 cut(s)	423
GlaI	GCGC	1 cut(s)	309
GluI	GCNGC	3 cut(s)	55, 58, 178
GsuI	CTGGAG	2 cut(s)	55, 105
HaeII	RGCGCY	1 cut(s)	311
HaeIII	GGCC	3 cut(s)	6, 95, 301
HgaI	GACGC	2 cut(s)	49, 274
HhaI	GCGC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	394
Hin6I	GCGC	1 cut(s)	308
HinP1I	GCGC	1 cut(s)	308
HinfI	GANTC	2 cut(s)	206, 341
Hpy188I	TCNGA	2 cut(s)	205, 211
Hpy188III	TCNNGA	3 cut(s)	38, 109, 372
Hpy99I	CGWCG	2 cut(s)	65, 268
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	5 cut(s)	33, 105, 156, 408, 420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 307
HpyF3I	CTNAG	1 cut(s)	269
Hsp92II	CATG	1 cut(s)	394
HspAI	GCGC	1 cut(s)	308
Kzo9I	GATC	2 cut(s)	111, 374
LmnI	GCTCC	3 cut(s)	140, 252, 326
LweI	GCATC	3 cut(s)	70, 114, 338
MaeI	CTAG	1 cut(s)	423
MalI	GATC	2 cut(s)	113, 376
MboI	GATC	2 cut(s)	111, 374
MboII	GAAGA	3 cut(s)	22, 295, 298
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	5 cut(s)	85, 162, 237, 264, 391
MseI	TTAA	1 cut(s)	45
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	186, 307
NdeII	GATC	2 cut(s)	111, 374
NlaIII	CATG	1 cut(s)	394
NlaIV	GGNNCC	2 cut(s)	19, 142
PaeR7I	CTCGAG	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	206, 341
PkrI	GCNGC	3 cut(s)	56, 59, 179
PpuMI	RGGWCCY	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	19, 142
PspPI	GGNCC	2 cut(s)	4, 17
PspPPI	RGGWCCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	3 cut(s)	55, 58, 178
Sau3AI	GATC	2 cut(s)	111, 374
Sau96I	GGNCC	2 cut(s)	4, 17
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	4 cut(s)	162, 257, 354, 413
SfaNI	GCATC	3 cut(s)	70, 114, 338
Sfr274I	CTCGAG	1 cut(s)	38
SinI	GGWCC	1 cut(s)	17
SlaI	CTCGAG	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SpeI	ACTAGT	1 cut(s)	422
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	4 cut(s)	24, 55, 58, 177
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	5 cut(s)	39, 78, 257, 263, 314
TasI	AATT	1 cut(s)	259
TauI	GCSGC	3 cut(s)	57, 60, 180
TfiI	GAWTC	2 cut(s)	206, 341
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	5 cut(s)	79, 191, 236, 340, 384
TspRI	CASTG	5 cut(s)	79, 191, 236, 340, 384
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	38
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.