Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004878

Physical Location & Seq

Genomic Coordinates Forward (+)

39326327 .. 39327829

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00417660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTGGTCGAAGTTCCACCGCTCGTACCCGCAGGACCGGGAGCTCGAATCGACACCGAGGCAATGGGGGAAGGGGATGGAGAGCAGGCTGAAAGCGCTTTTGAGTGGTGATGGAGCATCCGGTAATGATTCACAGCAGGTCTCCATTGTAAGGCACGCATATCAGCTTAGTCCTAATGCCCCTAAAGAAAGAGTTGATAAGAGAAAGCACTATGATCAAAAATCGGGCCGGAGTGCAGCTTCTTTTCTTAAAGCTTCCAAGTCAACCAACTGCCTTACCAATTGTGAAGCAGAGAAGATGATTGCCTATGAAACATGTAATAGCATTTGGAAGATGATAACTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

9.51

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0099351 RchiOBHm_Chr2g0103041 RchiOBHm_Chr2g0150881 RchiOBHm_Chr3g0495181 RchiOBHm_Chr4g0387961 RchiOBHm_Chr5g0055791 RchiOBHm_Chr7g0184561
rosa_laevigata	RLG00000001087 RLG00000012261 RLG00000014393 RLG00000030000
rosa_multiflora	Rmu_sc0006188.1_g000006 Rmu_sc0006493.1_g000021 Rmu_sc0032246.1_g000001 Rmu_sc0038175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034240 Rroxscaffold_4G00294030 Rroxscaffold_4G00295050 Rroxscaffold_6G00393460 Rroxscaffold_6G00417660 Rroxscaffold_6G00425110
rosa_rugosa	Rorug07G0313500
rosa_samantha	Rh1BG011700 Rh2AG245400 Rh3AG184600 Rh4CG286600 Rh5BG376400 Rh5CG399400 Rh7CG049100 Rh7CG068800 Rh7DG068200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	21
AciI	CCGC	2 cut(s)	19, 29
AfaI	GTAC	1 cut(s)	26
AfeI	AGCGCT	1 cut(s)	96
AfiI	CCNNNNNNNGG	1 cut(s)	150
AflIII	ACRYGT	1 cut(s)	314
AluBI	AGCT	4 cut(s)	43, 166, 239, 254
AluI	AGCT	4 cut(s)	43, 166, 239, 254
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	145
Aor51HI	AGCGCT	1 cut(s)	96
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	34, 226
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	119
AvaII	GGWCC	1 cut(s)	34
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	2 cut(s)	70, 104
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	34, 226
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	56
BsaWI	WCCGGW	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	2 cut(s)	81, 116
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMI	GCAATG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	3 cut(s)	37, 120, 229
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	1 cut(s)	145
BsnI	GGCC	1 cut(s)	228
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	214
BspACI	CCGC	2 cut(s)	19, 29
BspANI	GGCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	214
BstC8I	GCNNGC	2 cut(s)	86, 156
BstDEI	CTNAG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	81, 116
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	1 cut(s)	217
BstMAI	GTCTC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	214
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	1 cut(s)	36
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	81, 116
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	86, 156
CfoI	GCGC	1 cut(s)	97
Cfr13I	GGNCC	2 cut(s)	34, 226
Csp6I	GTAC	1 cut(s)	25
CviAII	CATG	2 cut(s)	315, 345
CviJI	RGCY	6 cut(s)	43, 88, 166, 228, 239, 254
CviKI_1	RGCY	6 cut(s)	43, 88, 166, 228, 239, 254
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	1 cut(s)	167
DpnI	GATC	1 cut(s)	216
DpnII	GATC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	145
Eco47I	GGWCC	1 cut(s)	34
Eco47III	AGCGCT	1 cut(s)	96
Eco53kI	GAGCTC	1 cut(s)	43
EcoICRI	GAGCTC	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	45
FaeI	CATG	2 cut(s)	318, 348
FaiI	YATR	5 cut(s)	160, 213, 309, 316, 346
FatI	CATG	2 cut(s)	314, 344
FauI	CCCGC	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	2 cut(s)	88, 103
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	237
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	3 cut(s)	37, 120, 229
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	318, 348
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	2 cut(s)	47, 128
HpaII	CCGG	3 cut(s)	37, 120, 229
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	264
Hpy8I	GTNNAC	1 cut(s)	264
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	167
Hsp92II	CATG	2 cut(s)	318, 348
HspAI	GCGC	1 cut(s)	95
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	40, 113
LpnPI	CCDG	6 cut(s)	17, 50, 70, 122, 133, 242
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	125
MalI	GATC	1 cut(s)	216
MbiI	CCGCTC	1 cut(s)	21
MboI	GATC	1 cut(s)	214
MboII	GAAGA	2 cut(s)	307, 343
MfeI	CAATTG	1 cut(s)	280
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	280
MnlI	CCTC	1 cut(s)	51
MseI	TTAA	1 cut(s)	249
MspI	CCGG	3 cut(s)	37, 120, 229
MspR9I	CCNGG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	1 cut(s)	214
NlaIII	CATG	2 cut(s)	318, 348
NspI	RCATGY	1 cut(s)	318
PciI	ACATGT	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	47, 128
PkrI	GCNGC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	314
Psp124BI	GAGCTC	1 cut(s)	45
PspPI	GGNCC	2 cut(s)	34, 226
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	214
Sau96I	GGNCC	2 cut(s)	34, 226
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	5 cut(s)	45, 141, 168, 241, 256
SfaNI	GCATC	1 cut(s)	125
SinI	GGWCC	1 cut(s)	34
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	2 cut(s)	19, 29
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	36
TaqI	TCGA	3 cut(s)	8, 45, 50
TasI	AATT	1 cut(s)	280
TfiI	GAWTC	2 cut(s)	47, 128
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	34
XceI	RCATGY	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.