Rroxscaffold_4G00295050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004878
Physical Location & Seq
Reverse (-)
14962022 .. 14962234
213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00295050.1

Sequence Viewer

Length: 213 bp
ATGTCGTTTTGCACCGATTTTTCTCCTGCTGGAGCCGAGTCGCCGGTGACCACCGGACCTCCATCTCCGACCGGAAAGCGACCTAGAGACGAACCGGAAGGTGACGACAATCATGAAGACGACGGGAGCTGCGACCGAGATTCGGTACTCGAGACCGGATCTGTACCTACAGCTTATTCTTCCTCATCGCGGATTTCGTTCTCCTTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

70

Amino Acids

7.36

Weight (kDa)

4.16

Isoelectric Point (pI)

82.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 190
AciI CCGC 1 cut(s) 190
AclWI GGATC 1 cut(s) 166
AfaI GTAC 2 cut(s) 147, 165
AfiI CCNNNNNNNGG 2 cut(s) 142, 189
AluBI AGCT 2 cut(s) 129, 173
AluI AGCT 2 cut(s) 129, 173
Alw26I GTCTC 2 cut(s) 81, 146
AlwI GGATC 1 cut(s) 166
Ama87I CYCGRG 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 58, 113
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 70
BcoDI GTCTC 2 cut(s) 81, 146
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 130
BlsI GCNGC 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 146
BsaWI WCCGGW 4 cut(s) 53, 71, 94, 155
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 189
Bse118I RCCGGY 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 142, 189
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 190
Bsh1285I CGRYCG 2 cut(s) 72, 136
BsiEI CGRYCG 2 cut(s) 72, 136
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 5 cut(s) 44, 54, 72, 95, 156
BslI CCNNNNNNNGG 2 cut(s) 142, 189
BsmAI GTCTC 2 cut(s) 81, 146
BsmBI CGTCTC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 149
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 1 cut(s) 190
BspFNI CGCG 1 cut(s) 190
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 1 cut(s) 166
BspTNI GGTCTC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssMI GATC 1 cut(s) 158
BstEII GGTNACC 1 cut(s) 46
BstFNI CGCG 1 cut(s) 190
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 2 cut(s) 81, 146
BstMBI GATC 1 cut(s) 158
BstMCI CGRYCG 2 cut(s) 72, 136
BstPI GGTNACC 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtgZI GCGATG 1 cut(s) 171
CciI TCATGA 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 146, 164
CviAII CATG 1 cut(s) 113
CviJI RGCY 3 cut(s) 35, 129, 173
CviKI_1 RGCY 3 cut(s) 35, 129, 173
CviQI GTAC 2 cut(s) 146, 164
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 149
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 116
FaiI YATR 2 cut(s) 114, 211
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 130
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 51
HapII CCGG 5 cut(s) 44, 54, 72, 95, 156
Hin1II CATG 1 cut(s) 116
HinfI GANTC 2 cut(s) 38, 140
HpaII CCGG 5 cut(s) 44, 54, 72, 95, 156
HphI GGTGA 2 cut(s) 58, 113
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 113, 151
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 12
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 32, 126
LpnPI CCDG 7 cut(s) 15, 39, 57, 67, 85, 108, 169
Lsp1109I GCAGC 1 cut(s) 116
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 46, 101
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 2 cut(s) 128, 171
MflI RGATCY 1 cut(s) 158
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 2 cut(s) 69, 193
MspI CCGG 5 cut(s) 44, 54, 72, 95, 156
MvnI CGCG 1 cut(s) 190
NdeII GATC 1 cut(s) 158
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 46, 101
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 112
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 194
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 131
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspEI GGTNACC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 2 cut(s) 147, 165
RsaNI GTAC 2 cut(s) 146, 164
SatI GCNGC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 47
SetI ASST 6 cut(s) 61, 85, 103, 131, 169, 175
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 149
SgrAI CRCCGGYG 1 cut(s) 43
SinI GGWCC 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SsiI CCGC 1 cut(s) 190
SspMI CTAG 1 cut(s) 84
TaqI TCGA 1 cut(s) 150
TaqII GACCGA 1 cut(s) 150
TfiI GAWTC 1 cut(s) 140
TseFI GTSAC 2 cut(s) 46, 101
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 2 cut(s) 46, 101
TspDTI ATGAA 2 cut(s) 129, 198
VpaK11BI GGWCC 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.