Rroxscaffold_4G00294030

50S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004878
Physical Location & Seq
Forward (+)
14236005 .. 14238941
2937 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00294030.1

Sequence Viewer

Length: 249 bp
ATGTTCGAGAAGATCACATTTGATATAAAGCTTGAGAAGTTTGACGCAGCAGCAAAGATCAAAATCATAAAGGAGGGTAGGACTTTCACTTGTTTGGAAGTAGAGGACGTTAAAGACTTGGTGGAAAAAGCTCATGTTGTGCTGAAGAAGGGTGTGACCAAAGAGGTGGTGTTACATCTCCAAGTATGGCTATTTCCAGATAAAATTGAAAACAAGTACAAACACGAAAATTATAGTCTCAATCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L12

Protein Analysis

82

Amino Acids

9.69

Weight (kDa)

8.67

Isoelectric Point (pI)

21.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L12 PF00542 7 - 55 1.6e-09 Ribosomal protein L7/L12 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 164
AfaI GTAC 1 cut(s) 218
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 2 cut(s) 31, 131
AluI AGCT 2 cut(s) 31, 131
Alw26I GTCTC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 47, 50
BbvI GCAGC 2 cut(s) 59, 62
BcoDI GTCTC 1 cut(s) 242
BisI GCNGC 2 cut(s) 48, 51
BlsI GCNGC 2 cut(s) 49, 52
BpuEI CTTGAG 1 cut(s) 53
Bsa29I ATCGAT 1 cut(s) 244
BsaBI GATNNNNATC 1 cut(s) 62
Bse8I GATNNNNATC 1 cut(s) 62
BseCI ATCGAT 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 62
BseXI GCAGC 2 cut(s) 59, 62
BshVI ATCGAT 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 242
Bsp143I GATC 2 cut(s) 12, 57
BspDI ATCGAT 1 cut(s) 244
BssMI GATC 2 cut(s) 12, 57
BstKTI GATC 2 cut(s) 15, 60
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 2 cut(s) 12, 57
BstV1I GCAGC 2 cut(s) 59, 62
BstXI CCANNNNNNTGG 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 244
BsuTUI ATCGAT 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 244
CseI GACGC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 134
CviJI RGCY 3 cut(s) 31, 131, 190
CviKI_1 RGCY 3 cut(s) 31, 131, 190
CviQI GTAC 1 cut(s) 217
DpnI GATC 2 cut(s) 14, 59
DpnII GATC 2 cut(s) 12, 57
Eco57I CTGAAG 1 cut(s) 164
FaeI CATG 1 cut(s) 137
FaiI YATR 5 cut(s) 26, 68, 135, 187, 234
FatI CATG 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 48, 51
Fsp4HI GCNGC 2 cut(s) 48, 51
GluI GCNGC 2 cut(s) 48, 51
HgaI GACGC 1 cut(s) 53
Hin1II CATG 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 7, 197
HpyAV CCTTC 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 137
Kzo9I GATC 2 cut(s) 12, 57
LpnPI CCDG 1 cut(s) 210
Lsp1109I GCAGC 2 cut(s) 59, 62
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 154, 171
MalI GATC 2 cut(s) 14, 59
MboI GATC 2 cut(s) 12, 57
MboII GAAGA 2 cut(s) 22, 157
MluCI AATT 2 cut(s) 204, 229
MnlI CCTC 3 cut(s) 67, 97, 157
MseI TTAA 1 cut(s) 111
NdeII GATC 2 cut(s) 12, 57
NlaIII CATG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 154
PkrI GCNGC 2 cut(s) 49, 52
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 48, 51
Sau3AI GATC 2 cut(s) 12, 57
SetI ASST 4 cut(s) 33, 111, 133, 168
SgeI CNNG 9 cut(s) 19, 44, 102, 130, 146, 194, 209, 226, 236
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
Sse9I AATT 2 cut(s) 204, 229
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 6, 244
TasI AATT 2 cut(s) 204, 229
TatI WGTACW 1 cut(s) 216
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 47, 50
Tsp45I GTSAC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.