Rroxscaffold_1G00034240

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004878
Physical Location & Seq
Forward (+)
49645892 .. 49646917
1026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00034240.1

Sequence Viewer

Length: 540 bp
ATGGATTTGGGAGCAGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGATATGGCATTGAAGGCCTCGGGAGCCTACAAAAACTGCAAGCCGTGTTCAAGGCAATGTCACATGAAACGCGGAACGTTGCGGTACGGGTACGCGATACGGGTACGCGGTACGTCGTTTTTAGGATACGCGAGGAGATCGGAGCCGAGACGGCGCGAGTGTCAAACCGGTCCTCCCCGCTCGGAGCCTCAAAGCCGTCGAGGACGCCAAGGCGTGATTCCCGAGACCCGTGTGAAAACCGGGTTCGCTATGTTTGGCGATCCGGATCGCGAACGCCCGCGATTGGGTTCGTACGATCCGGAACGCGGGTCGCCGGTAGGTGCAGCGTTTCCGGTGACTCGGTTCAAGGCTGTGCGGCGACCACCGGAACCGGAACTGTTCGGATTCGATATGTCGGCGAAGTTCCACTGCTCGTACCGGAGGACCGGGAGCTTTCGAGTGGCGAAGGAGCATCCGGTGATGATTCACGGCAGGTTTCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

179

Amino Acids

20.22

Weight (kDa)

10.34

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 16 - 34 1.3e-06 Transcription factor BRX N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 516
AccBSI CCGCTC 1 cut(s) 234
AccII CGCG 8 cut(s) 126, 149, 162, 185, 210, 324, 334, 360
AccIII TCCGGA 2 cut(s) 316, 352
AciI CCGC 7 cut(s) 126, 136, 162, 232, 332, 360, 409
AclI AACGTT 1 cut(s) 131
AclWI GGATC 3 cut(s) 308, 327, 344
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 6 cut(s) 140, 146, 159, 166, 347, 470
AfiI CCNNNNNNNGG 3 cut(s) 337, 338, 359
AgeI ACCGGT 1 cut(s) 221
AgsI TTSAA 3 cut(s) 67, 105, 400
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 1 cut(s) 486
AluI AGCT 1 cut(s) 486
Alw26I GTCTC 2 cut(s) 196, 272
AlwI GGATC 3 cut(s) 308, 327, 344
AlwNI CAGNNNCTG 1 cut(s) 20
Ama87I CYCGRG 2 cut(s) 73, 275
Aor13HI TCCGGA 2 cut(s) 316, 352
AoxI GGCC 2 cut(s) 30, 69
ApeKI GCWGC 1 cut(s) 377
AsiGI ACCGGT 1 cut(s) 221
AspLEI GCGC 1 cut(s) 210
AspS9I GGNCC 2 cut(s) 224, 477
AsuC2I CCSGG 2 cut(s) 295, 481
AsuHPI GGTGA 2 cut(s) 400, 523
AvaI CYCGRG 2 cut(s) 73, 275
AvaII GGWCC 2 cut(s) 224, 477
BbvI GCAGC 1 cut(s) 389
BceAI ACGGC 4 cut(s) 82, 221, 234, 538
BciVI GTATCC 1 cut(s) 173
BcnI CCSGG 2 cut(s) 295, 481
BcoDI GTCTC 2 cut(s) 196, 272
BfuAI ACCTGC 1 cut(s) 516
BfuI GTATCC 1 cut(s) 173
BglI GCCNNNNNGGC 1 cut(s) 205
BisI GCNGC 2 cut(s) 378, 410
BlsI GCNGC 2 cut(s) 379, 411
Bme1390I CCNGG 2 cut(s) 295, 481
Bme18I GGWCC 2 cut(s) 224, 477
BmeT110I CYCGRG 2 cut(s) 73, 275
BmgT120I GGNCC 2 cut(s) 224, 477
BmiI GGNNCC 4 cut(s) 79, 198, 240, 423
BmrFI CCNGG 2 cut(s) 295, 481
BmsI GCATC 3 cut(s) 7, 51, 514
BpmI CTGGAG 1 cut(s) 42
BpuMI CCSGG 2 cut(s) 295, 481
BsaBI GATNNNNATC 1 cut(s) 318
BsaHI GRCGYC 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 72, 262
BsaWI WCCGGW 8 cut(s) 221, 316, 352, 385, 418, 424, 471, 508
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 338, 359
Bse118I RCCGGY 2 cut(s) 221, 367
Bse3DI GCAATG 1 cut(s) 116
Bse8I GATNNNNATC 1 cut(s) 318
BseAI TCCGGA 2 cut(s) 316, 352
BseDI CCNNGG 2 cut(s) 72, 262
BseGI GGATG 1 cut(s) 505
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 3 cut(s) 337, 338, 359
BseMI GCAATG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 389
BsgI GTGCAG 1 cut(s) 396
Bsh1236I CGCG 8 cut(s) 126, 149, 162, 185, 210, 324, 334, 360
BshFI GGCC 2 cut(s) 32, 71
BshTI ACCGGT 1 cut(s) 221
BsiHKCI CYCGRG 2 cut(s) 73, 275
BsiWI CGTACG 1 cut(s) 345
BslI CCNNNNNNNGG 3 cut(s) 337, 338, 359
BsmAI GTCTC 2 cut(s) 196, 272
BsmBI CGTCTC 1 cut(s) 196
BsnI GGCC 2 cut(s) 32, 71
Bso31I GGTCTC 1 cut(s) 272
BsoBI CYCGRG 2 cut(s) 73, 275
Bsp13I TCCGGA 2 cut(s) 316, 352
Bsp143I GATC 5 cut(s) 48, 191, 313, 319, 349
Bsp68I TCGCGA 1 cut(s) 324
BspACI CCGC 7 cut(s) 126, 136, 162, 232, 332, 360, 409
BspANI GGCC 2 cut(s) 32, 71
BspEI TCCGGA 2 cut(s) 316, 352
BspFNI CGCG 8 cut(s) 126, 149, 162, 185, 210, 324, 334, 360
BspLI GGNNCC 4 cut(s) 79, 198, 240, 423
BspMI ACCTGC 1 cut(s) 516
BspPI GGATC 3 cut(s) 308, 327, 344
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 116
BsrFI RCCGGY 2 cut(s) 221, 367
BssAI RCCGGY 2 cut(s) 221, 367
BssECI CCNNGG 2 cut(s) 72, 262
BssMI GATC 5 cut(s) 48, 191, 313, 319, 349
BssNI GRCGYC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 432
BstACI GRCGYC 1 cut(s) 259
BstC8I GCNNGC 2 cut(s) 95, 332
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 8 cut(s) 126, 149, 162, 185, 210, 324, 334, 360
BstHHI GCGC 1 cut(s) 210
BstKTI GATC 5 cut(s) 51, 194, 316, 322, 352
BstMAI GTCTC 2 cut(s) 196, 272
BstMBI GATC 5 cut(s) 48, 191, 313, 319, 349
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 205
BstSCI CCNGG 2 cut(s) 293, 479
BstUI CGCG 8 cut(s) 126, 149, 162, 185, 210, 324, 334, 360
BstV1I GCAGC 1 cut(s) 389
BsuI GTATCC 1 cut(s) 173
BsuRI GGCC 2 cut(s) 32, 71
BtsCI GGATG 1 cut(s) 505
BtsI GCAGTG 1 cut(s) 460
BtsIMutI CAGTG 1 cut(s) 460
BtuMI TCGCGA 1 cut(s) 324
BveI ACCTGC 1 cut(s) 516
Cac8I GCNNGC 2 cut(s) 95, 332
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 210
Cfr10I RCCGGY 2 cut(s) 221, 367
Cfr13I GGNCC 2 cut(s) 224, 477
CseI GACGC 1 cut(s) 267
Csp6I GTAC 6 cut(s) 139, 145, 158, 165, 346, 469
CspAI ACCGGT 1 cut(s) 221
CviAII CATG 1 cut(s) 118
CviJI RGCY 9 cut(s) 32, 71, 80, 97, 199, 241, 249, 404, 486
CviKI_1 RGCY 9 cut(s) 32, 71, 80, 97, 199, 241, 249, 404, 486
CviQI GTAC 6 cut(s) 139, 145, 158, 165, 346, 469
DpnI GATC 5 cut(s) 50, 193, 315, 321, 351
DpnII GATC 5 cut(s) 48, 191, 313, 319, 349
Eco130I CCWWGG 1 cut(s) 262
Eco147I AGGCCT 1 cut(s) 71
Eco31I GGTCTC 1 cut(s) 272
Eco47I GGWCC 2 cut(s) 224, 477
Eco88I CYCGRG 2 cut(s) 73, 275
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 1 cut(s) 121
FaiI YATR 4 cut(s) 59, 119, 305, 446
FatI CATG 1 cut(s) 117
FauI CCCGC 3 cut(s) 239, 339, 353
Fnu4HI GCNGC 2 cut(s) 378, 410
FokI GGATG 1 cut(s) 492
Fsp4HI GCNGC 2 cut(s) 378, 410
GlaI GCGC 1 cut(s) 209
GluI GCNGC 2 cut(s) 378, 410
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 32, 71
HgaI GACGC 1 cut(s) 267
HhaI GCGC 1 cut(s) 210
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 208
HinP1I GCGC 1 cut(s) 208
HinfI GANTC 4 cut(s) 271, 391, 438, 517
HphI GGTGA 2 cut(s) 400, 523
Hpy188I TCNGA 3 cut(s) 196, 238, 437
Hpy188III TCNNGA 6 cut(s) 46, 75, 275, 317, 323, 353
Hpy99I CGWCG 2 cut(s) 172, 255
HpyAV CCTTC 2 cut(s) 61, 493
HpyCH4III ACNGT 1 cut(s) 432
HpyCH4IV ACGT 2 cut(s) 131, 167
HpyCH4V TGCA 3 cut(s) 42, 93, 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 205
HpySE526I ACGT 2 cut(s) 131, 167
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 208
Kpn2I TCCGGA 2 cut(s) 316, 352
Kzo9I GATC 5 cut(s) 48, 191, 313, 319, 349
LmnI GCTCC 6 cut(s) 11, 77, 196, 238, 483, 502
Lsp1109I GCAGC 1 cut(s) 389
LweI GCATC 3 cut(s) 7, 51, 514
MaeII ACGT 2 cut(s) 131, 167
MaeIII GTNAC 2 cut(s) 113, 388
MalI GATC 5 cut(s) 50, 193, 315, 321, 351
MbiI CCGCTC 1 cut(s) 234
MboI GATC 5 cut(s) 48, 191, 313, 319, 349
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 7 cut(s) 22, 82, 180, 237, 248, 252, 468
MroI TCCGGA 2 cut(s) 316, 352
MspR9I CCNGG 2 cut(s) 295, 481
MvnI CGCG 8 cut(s) 126, 149, 162, 185, 210, 324, 334, 360
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 205
NciI CCSGG 2 cut(s) 295, 481
NdeII GATC 5 cut(s) 48, 191, 313, 319, 349
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 4 cut(s) 79, 198, 240, 423
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 2 cut(s) 113, 388
NruI TCGCGA 1 cut(s) 324
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 3 cut(s) 271, 438, 517
Pfl23II CGTACG 1 cut(s) 345
PinAI ACCGGT 1 cut(s) 221
PkrI GCNGC 2 cut(s) 379, 411
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp1406I AACGTT 1 cut(s) 131
PspLI CGTACG 1 cut(s) 345
PspN4I GGNNCC 4 cut(s) 79, 198, 240, 423
PspPI GGNCC 2 cut(s) 224, 477
PstNI CAGNNNCTG 1 cut(s) 20
RruI TCGCGA 1 cut(s) 324
RsaI GTAC 6 cut(s) 140, 146, 159, 166, 347, 470
RsaNI GTAC 6 cut(s) 139, 145, 158, 165, 346, 469
SatI GCNGC 2 cut(s) 378, 410
Sau3AI GATC 5 cut(s) 48, 191, 313, 319, 349
Sau96I GGNCC 2 cut(s) 224, 477
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 295, 481
SetI ASST 5 cut(s) 134, 170, 376, 488, 530
SfaNI GCATC 3 cut(s) 7, 51, 514
SinI GGWCC 2 cut(s) 224, 477
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 7 cut(s) 126, 136, 162, 232, 332, 360, 409
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 293, 479
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 432
TaiI ACGT 2 cut(s) 134, 170
TaqI TCGA 3 cut(s) 253, 441, 490
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 3 cut(s) 271, 438, 517
TscAI CASTG 1 cut(s) 467
TseFI GTSAC 2 cut(s) 113, 388
TseI GCWGC 1 cut(s) 377
Tsp45I GTSAC 2 cut(s) 113, 388
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 224, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.