RIBOSOMAL protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0099351 RchiOBHm_Chr2g0103041 RchiOBHm_Chr2g0150881 RchiOBHm_Chr3g0495181 RchiOBHm_Chr4g0387961 RchiOBHm_Chr5g0055791 RchiOBHm_Chr7g0184561 |
| rosa_laevigata | RLG00000001087 RLG00000012261 RLG00000014393 RLG00000030000 |
| rosa_multiflora | Rmu_sc0006188.1_g000006 Rmu_sc0006493.1_g000021 Rmu_sc0032246.1_g000001 Rmu_sc0038175.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00034240 Rroxscaffold_4G00294030 Rroxscaffold_4G00295050 Rroxscaffold_6G00393460 Rroxscaffold_6G00417660 Rroxscaffold_6G00425110 |
| rosa_rugosa | Rorug07G0313500 |
| rosa_samantha | Rh1BG011700 Rh2AG245400 Rh3AG184600 Rh4CG286600 Rh5BG376400 Rh5CG399400 Rh7CG049100 Rh7CG068800 Rh7DG068200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 12 |
| AccII | CGCG | 1 cut(s) | 299 |
| AciI | CCGC | 1 cut(s) | 299 |
| AcsI | RAATTY | 1 cut(s) | 171 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 93, 94 |
| AflIII | ACRYGT | 1 cut(s) | 251 |
| AluBI | AGCT | 1 cut(s) | 283 |
| AluI | AGCT | 1 cut(s) | 283 |
| ApeKI | GCWGC | 1 cut(s) | 302 |
| ApoI | RAATTY | 1 cut(s) | 171 |
| AspS9I | GGNCC | 3 cut(s) | 29, 38, 77 |
| AsuHPI | GGTGA | 1 cut(s) | 232 |
| AvaII | GGWCC | 3 cut(s) | 29, 38, 77 |
| BbsI | GAAGAC | 2 cut(s) | 235, 254 |
| BbvI | GCAGC | 1 cut(s) | 314 |
| BccI | CCATC | 2 cut(s) | 88, 96 |
| BclI | TGATCA | 1 cut(s) | 184 |
| BisI | GCNGC | 2 cut(s) | 300, 303 |
| BlsI | GCNGC | 2 cut(s) | 301, 304 |
| Bme18I | GGWCC | 3 cut(s) | 29, 38, 77 |
| BmgT120I | GGNCC | 3 cut(s) | 29, 38, 77 |
| BpiI | GAAGAC | 2 cut(s) | 235, 254 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 217, 249 |
| BpmI | CTGGAG | 1 cut(s) | 219 |
| BpuEI | CTTGAG | 2 cut(s) | 170, 305 |
| BsaBI | GATNNNNATC | 1 cut(s) | 314 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 93, 94 |
| Bse1I | ACTGG | 1 cut(s) | 236 |
| Bse8I | GATNNNNATC | 1 cut(s) | 314 |
| BseJI | GATNNNNATC | 1 cut(s) | 314 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 93, 94 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseNI | ACTGG | 1 cut(s) | 236 |
| BseXI | GCAGC | 1 cut(s) | 314 |
| Bsh1236I | CGCG | 1 cut(s) | 299 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 93, 94 |
| Bsp143I | GATC | 3 cut(s) | 184, 264, 309 |
| BspACI | CCGC | 1 cut(s) | 299 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspFNI | CGCG | 1 cut(s) | 299 |
| BsrI | ACTGG | 1 cut(s) | 236 |
| BssMI | GATC | 3 cut(s) | 184, 264, 309 |
| Bst4CI | ACNGT | 2 cut(s) | 220, 343 |
| Bst6I | CTCTTC | 1 cut(s) | 218 |
| BstDEI | CTNAG | 1 cut(s) | 258 |
| BstFNI | CGCG | 1 cut(s) | 299 |
| BstKTI | GATC | 3 cut(s) | 187, 267, 312 |
| BstMBI | GATC | 3 cut(s) | 184, 264, 309 |
| BstNSI | RCATGY | 1 cut(s) | 255 |
| BstUI | CGCG | 1 cut(s) | 299 |
| BstV1I | GCAGC | 1 cut(s) | 314 |
| BstV2I | GAAGAC | 2 cut(s) | 235, 254 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| Cfr13I | GGNCC | 3 cut(s) | 29, 38, 77 |
| CseI | GACGC | 1 cut(s) | 305 |
| CviAII | CATG | 1 cut(s) | 252 |
| CviJI | RGCY | 1 cut(s) | 283 |
| CviKI_1 | RGCY | 1 cut(s) | 283 |
| DdeI | CTNAG | 1 cut(s) | 258 |
| DpnI | GATC | 3 cut(s) | 186, 266, 311 |
| DpnII | GATC | 3 cut(s) | 184, 264, 309 |
| Eam1104I | CTCTTC | 1 cut(s) | 218 |
| EarI | CTCTTC | 1 cut(s) | 218 |
| Eco47I | GGWCC | 3 cut(s) | 29, 38, 77 |
| EcoO109I | RGGNCCY | 1 cut(s) | 29 |
| FaeI | CATG | 1 cut(s) | 255 |
| FatI | CATG | 1 cut(s) | 251 |
| FbaI | TGATCA | 1 cut(s) | 184 |
| FblI | GTMKAC | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 2 cut(s) | 300, 303 |
| Fsp4HI | GCNGC | 2 cut(s) | 300, 303 |
| GluI | GCNGC | 2 cut(s) | 300, 303 |
| GsuI | CTGGAG | 1 cut(s) | 219 |
| HgaI | GACGC | 1 cut(s) | 305 |
| Hin1II | CATG | 1 cut(s) | 255 |
| HindIII | AAGCTT | 1 cut(s) | 281 |
| HinfI | GANTC | 3 cut(s) | 70, 102, 145 |
| HphI | GGTGA | 1 cut(s) | 232 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 2 cut(s) | 129, 259 |
| Hpy188III | TCNNGA | 3 cut(s) | 46, 67, 149 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| HpyCH4III | ACNGT | 2 cut(s) | 220, 343 |
| HpyCH4V | TGCA | 2 cut(s) | 7, 161 |
| HpyF3I | CTNAG | 1 cut(s) | 258 |
| Hsp92II | CATG | 1 cut(s) | 255 |
| Ksp22I | TGATCA | 1 cut(s) | 184 |
| Kzo9I | GATC | 3 cut(s) | 184, 264, 309 |
| LpnPI | CCDG | 2 cut(s) | 35, 249 |
| Lsp1109I | GCAGC | 1 cut(s) | 314 |
| MalI | GATC | 3 cut(s) | 186, 266, 311 |
| MboI | GATC | 3 cut(s) | 184, 264, 309 |
| MboII | GAAGA | 4 cut(s) | 235, 240, 259, 274 |
| MluCI | AATT | 2 cut(s) | 49, 171 |
| MnlI | CCTC | 5 cut(s) | 20, 92, 145, 243, 319 |
| MvnI | CGCG | 1 cut(s) | 299 |
| NdeII | GATC | 3 cut(s) | 184, 264, 309 |
| NlaIII | CATG | 1 cut(s) | 255 |
| NspI | RCATGY | 1 cut(s) | 255 |
| PciI | ACATGT | 1 cut(s) | 251 |
| PfeI | GAWTC | 3 cut(s) | 70, 102, 145 |
| PkrI | GCNGC | 2 cut(s) | 301, 304 |
| PpuMI | RGGWCCY | 1 cut(s) | 29 |
| PscI | ACATGT | 1 cut(s) | 251 |
| Psp5II | RGGWCCY | 1 cut(s) | 29 |
| PspPI | GGNCC | 3 cut(s) | 29, 38, 77 |
| PspPPI | RGGWCCY | 1 cut(s) | 29 |
| SatI | GCNGC | 2 cut(s) | 300, 303 |
| Sau3AI | GATC | 3 cut(s) | 184, 264, 309 |
| Sau96I | GGNCC | 3 cut(s) | 29, 38, 77 |
| SetI | ASST | 4 cut(s) | 31, 79, 235, 285 |
| SinI | GGWCC | 3 cut(s) | 29, 38, 77 |
| SmlI | CTYRAG | 2 cut(s) | 149, 284 |
| SmoI | CTYRAG | 2 cut(s) | 149, 284 |
| Sse9I | AATT | 2 cut(s) | 49, 171 |
| SsiI | CCGC | 1 cut(s) | 299 |
| SspI | AATATT | 1 cut(s) | 133 |
| TaaI | ACNGT | 2 cut(s) | 220, 343 |
| TaqI | TCGA | 1 cut(s) | 193 |
| TasI | AATT | 2 cut(s) | 49, 171 |
| TauI | GCSGC | 1 cut(s) | 302 |
| TfiI | GAWTC | 3 cut(s) | 70, 102, 145 |
| TscAI | CASTG | 1 cut(s) | 346 |
| TseI | GCWGC | 1 cut(s) | 302 |
| TspGWI | ACGGA | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 346 |
| VpaK11BI | GGWCC | 3 cut(s) | 29, 38, 77 |
| XapI | RAATTY | 1 cut(s) | 171 |
| XceI | RCATGY | 1 cut(s) | 255 |
| XmiI | GTMKAC | 1 cut(s) | 12 |