Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004878

Physical Location & Seq

Genomic Coordinates Forward (+)

1406276 .. 1406943

Gene Structure 668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG011700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGCCAAAAGAAAGGACCCCCCGCTGAGGACACTCTTGAGCCTAAGAAACGCCGCCGCGTCGGCTTCTCCATTGTCGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGATATGGCATTGAAGGCCTCGGGATCCTACAAAAACTGCAAGCCGTGTTCTAGGCTGTGCGGCGACCACCGCAACCGGAACTGTTCGGATTCTGATATGTCGGTGAAGTTCCACTGCTCGTACCAGAGGACTGGGAGCTCGAATTCGAATCTGAGGCTATGGGGGAAGGAGATGGAGAGTAGGCTGAAAGTGCTTTCGAGTGGCAATGGAGCATCCAGTGATGATTCACAGCAGGTTTCCATTGTGAGTGTGGTGATTCATGGTAGTTTTGGAGGTTTGGATTGGTTAATTGTGCCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

139

Amino Acids

15.17

Weight (kDa)

9.24

Isoelectric Point (pI)

36.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0099351 RchiOBHm_Chr2g0103041 RchiOBHm_Chr2g0150881 RchiOBHm_Chr3g0495181 RchiOBHm_Chr4g0387961 RchiOBHm_Chr5g0055791 RchiOBHm_Chr7g0184561
rosa_laevigata	RLG00000001087 RLG00000012261 RLG00000014393 RLG00000030000
rosa_multiflora	Rmu_sc0006188.1_g000006 Rmu_sc0006493.1_g000021 Rmu_sc0032246.1_g000001 Rmu_sc0038175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034240 Rroxscaffold_4G00294030 Rroxscaffold_4G00295050 Rroxscaffold_6G00393460 Rroxscaffold_6G00417660 Rroxscaffold_6G00425110
rosa_rugosa	Rorug07G0313500
rosa_samantha	Rh1BG011700 Rh2AG245400 Rh3AG184600 Rh4CG286600 Rh5BG376400 Rh5CG399400 Rh7CG049100 Rh7CG068800 Rh7DG068200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	340
AccII	CGCG	1 cut(s)	60
AciI	CCGC	5 cut(s)	24, 55, 58, 177, 187
AclWI	GGATC	2 cut(s)	135, 148
AcsI	RAATTY	1 cut(s)	259
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	130
AluBI	AGCT	1 cut(s)	255
AluI	AGCT	1 cut(s)	255
Alw21I	GWGCWC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	135, 148
Ama87I	CYCGRG	1 cut(s)	136
AoxI	GGCC	3 cut(s)	4, 93, 132
ApoI	RAATTY	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	4, 17
AsuHPI	GGTGA	2 cut(s)	232, 382
AsuII	TTCGAA	1 cut(s)	263
AvaI	CYCGRG	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	17
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	257
Bbv12I	GWGCWC	1 cut(s)	257
BbvCI	CCTCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	340
BglI	GCCNNNNNGGC	1 cut(s)	63
BisI	GCNGC	3 cut(s)	55, 58, 178
BlsI	GCNGC	3 cut(s)	56, 59, 179
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	4, 17
BmiI	GGNNCC	2 cut(s)	19, 142
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	3 cut(s)	70, 114, 338
BmuI	ACTGGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	253, 333
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	329
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	18, 260
BseNI	ACTGG	2 cut(s)	253, 333
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	6, 95, 134
BsiHKAI	GWGCWC	1 cut(s)	257
BsiHKCI	CYCGRG	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	193
BslI	CCNNNNNNNGG	1 cut(s)	28
BsnI	GGCC	3 cut(s)	6, 95, 134
BsoBI	CYCGRG	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	2 cut(s)	111, 140
BspACI	CCGC	5 cut(s)	24, 55, 58, 177, 187
BspANI	GGCC	3 cut(s)	6, 95, 134
BspCNI	CTCAG	2 cut(s)	19, 261
BspFNI	CGCG	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	19, 142
BspMI	ACCTGC	1 cut(s)	340
BspPI	GGATC	2 cut(s)	135, 148
BspT104I	TTCGAA	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	328
BsrI	ACTGG	2 cut(s)	253, 333
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	111, 140
Bst4CI	ACNGT	1 cut(s)	200
BstBI	TTCGAA	1 cut(s)	263
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	27, 45, 269, 417
BstF5I	GGATG	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	2 cut(s)	114, 143
BstMBI	GATC	2 cut(s)	111, 140
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 131, 186, 307
BstUI	CGCG	1 cut(s)	60
BstX2I	RGATCY	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	248
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	3 cut(s)	6, 95, 134
BtsCI	GGATG	1 cut(s)	329
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	2 cut(s)	229, 340
BveI	ACCTGC	1 cut(s)	340
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	4, 17
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	1 cut(s)	377
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	4 cut(s)	27, 45, 269, 417
DpnI	GATC	2 cut(s)	113, 142
DpnII	GATC	2 cut(s)	111, 140
Ecl136II	GAGCTC	1 cut(s)	255
Eco147I	AGGCCT	1 cut(s)	134
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	17
EcoRI	GAATTC	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	257
FaeI	CATG	1 cut(s)	380
FaiI	YATR	4 cut(s)	122, 215, 277, 378
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	3 cut(s)	55, 58, 178
FokI	GGATG	1 cut(s)	316
FriOI	GRGCYC	1 cut(s)	257
Fsp4HI	GCNGC	3 cut(s)	55, 58, 178
FspBI	CTAG	1 cut(s)	168
GluI	GCNGC	3 cut(s)	55, 58, 178
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	6, 95, 134
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	380
HinfI	GANTC	4 cut(s)	206, 265, 341, 373
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	2 cut(s)	232, 382
Hpy188I	TCNGA	3 cut(s)	205, 211, 270
Hpy188III	TCNNGA	3 cut(s)	38, 109, 138
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	124, 277
HpyCH4III	ACNGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	105, 156
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 131, 186, 307
HpyF3I	CTNAG	4 cut(s)	27, 45, 269, 417
Hsp92II	CATG	1 cut(s)	380
Kzo9I	GATC	2 cut(s)	111, 140
LmnI	GCTCC	2 cut(s)	252, 326
LpnPI	CCDG	6 cut(s)	69, 206, 234, 254, 335, 346
LweI	GCATC	3 cut(s)	70, 114, 338
MaeI	CTAG	1 cut(s)	168
MalI	GATC	2 cut(s)	113, 142
MboI	GATC	2 cut(s)	111, 140
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	257
MluCI	AATT	2 cut(s)	259, 405
MnlI	CCTC	6 cut(s)	22, 85, 145, 237, 264, 383
MseI	TTAA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	193
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	4 cut(s)	63, 131, 186, 307
NdeII	GATC	2 cut(s)	111, 140
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	19, 142
NspV	TTCGAA	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	134
PfeI	GAWTC	4 cut(s)	206, 265, 341, 373
PkrI	GCNGC	3 cut(s)	56, 59, 179
PpuMI	RGGWCCY	1 cut(s)	17
Psp124BI	GAGCTC	1 cut(s)	257
Psp5II	RGGWCCY	1 cut(s)	17
PspN4I	GGNNCC	2 cut(s)	19, 142
PspPI	GGNCC	2 cut(s)	4, 17
PspPPI	RGGWCCY	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	55, 58, 178
Sau3AI	GATC	2 cut(s)	111, 140
Sau96I	GGNCC	2 cut(s)	4, 17
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	3 cut(s)	257, 354, 394
SfaNI	GCATC	3 cut(s)	70, 114, 338
SfuI	TTCGAA	1 cut(s)	263
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	2 cut(s)	259, 405
SseBI	AGGCCT	1 cut(s)	134
SsiI	CCGC	5 cut(s)	24, 55, 58, 177, 187
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	257
StuI	AGGCCT	1 cut(s)	134
TaaI	ACNGT	1 cut(s)	200
TaqI	TCGA	4 cut(s)	78, 257, 263, 314
TasI	AATT	2 cut(s)	259, 405
TauI	GCSGC	3 cut(s)	57, 60, 180
TfiI	GAWTC	4 cut(s)	206, 265, 341, 373
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	2 cut(s)	236, 340
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	2 cut(s)	236, 340
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	364
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.