Rh5CG399400

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004878
Physical Location & Seq
Reverse (-)
53186107 .. 53187606
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG399400.1

Sequence Viewer

Length: 348 bp
ATGGATTTGGGAGCAGATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGGATATGGCATTGAAGGCCTCGGTAGCCTACAAAAATTGCAAGCGGTGTTTGAGGCTGTGCGGCGAACACCGGAATCAAAGCTGTTCGGATTCTGATATGTCGTCTAAGTTCCACTGCTCGTACCAGAGGACTGGCTGCTCGTATAAGAGGACTGGGAGCTCAAATTCGATGCTGAGGCAATGGGGGAAGGGGATGGAGAGCAGGCTGAAAGTGCTTTCAAGTGGCGATGGAGCATCCAGTAATGATTCACAACAGGTCTCCATTGTAAGATTAGAGGCACGCATATCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

115

Amino Acids

12.58

Weight (kDa)

9.19

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 114
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 1 cut(s) 176
AgsI TTSAA 2 cut(s) 67, 273
AluBI AGCT 3 cut(s) 135, 213, 344
AluI AGCT 3 cut(s) 135, 213, 344
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 1 cut(s) 316
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 2 cut(s) 30, 69
ApeKI GCWGC 1 cut(s) 189
ApoI RAATTY 1 cut(s) 217
BanII GRGCYC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 215
BbvCI CCTCAGC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 241, 275
BcoDI GTCTC 1 cut(s) 316
BisI GCNGC 2 cut(s) 115, 190
BlsI GCNGC 2 cut(s) 116, 191
BmrI ACTGGG 1 cut(s) 216
BmsI GCATC 4 cut(s) 7, 51, 213, 296
BmuI ACTGGG 1 cut(s) 216
BpmI CTGGAG 1 cut(s) 42
Bpu10I CCTNAGC 1 cut(s) 227
BsaI GGTCTC 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 123
Bse1I ACTGG 3 cut(s) 190, 211, 291
Bse3DI GCAATG 1 cut(s) 239
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 252, 287
BseMI GCAATG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 218
BseNI ACTGG 3 cut(s) 190, 211, 291
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 32, 71
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 316
BsnI GGCC 2 cut(s) 32, 71
Bso31I GGTCTC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 2 cut(s) 97, 114
BspANI GGCC 2 cut(s) 32, 71
BspCNI CTCAG 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 316
BsrDI GCAATG 1 cut(s) 239
BsrI ACTGG 3 cut(s) 190, 211, 291
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 1 cut(s) 48
BstC8I GCNNGC 3 cut(s) 95, 257, 334
BstDEI CTNAG 3 cut(s) 159, 227, 345
BstF5I GGATG 2 cut(s) 252, 287
BstKTI GATC 1 cut(s) 51
BstMAI GTCTC 1 cut(s) 316
BstMBI GATC 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 265
BstV1I GCAGC 1 cut(s) 176
BstXI CCANNNNNNTGG 1 cut(s) 185
BsuRI GGCC 2 cut(s) 32, 71
BtgZI GCGATG 1 cut(s) 294
BtsCI GGATG 2 cut(s) 252, 287
BtsI GCAGTG 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 166
Cac8I GCNNGC 3 cut(s) 95, 257, 334
CaiI CAGNNNCTG 1 cut(s) 20
Csp6I GTAC 1 cut(s) 175
CviJI RGCY 9 cut(s) 32, 71, 80, 109, 135, 189, 213, 259, 344
CviKI_1 RGCY 9 cut(s) 32, 71, 80, 109, 135, 189, 213, 259, 344
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 3 cut(s) 159, 227, 345
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 215
Eco31I GGTCTC 1 cut(s) 316
Eco53kI GAGCTC 1 cut(s) 213
EcoICRI GAGCTC 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 215
FaiI YATR 4 cut(s) 59, 152, 198, 338
Fnu4HI GCNGC 2 cut(s) 115, 190
FokI GGATG 2 cut(s) 259, 274
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 2 cut(s) 115, 190
GluI GCNGC 2 cut(s) 115, 190
GsuI CTGGAG 1 cut(s) 42
HaeIII GGCC 2 cut(s) 32, 71
HapII CCGG 1 cut(s) 124
HinfI GANTC 3 cut(s) 127, 143, 299
HpaII CCGG 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 142, 148
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 61, 235
HpyCH4V TGCA 2 cut(s) 42, 93
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 265
HpyF3I CTNAG 3 cut(s) 159, 227, 345
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 3 cut(s) 11, 210, 284
LpnPI CCDG 8 cut(s) 6, 137, 171, 191, 192, 241, 293, 304
Lsp1109I GCAGC 1 cut(s) 176
LweI GCATC 4 cut(s) 7, 51, 213, 296
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 88, 217
MnlI CCTC 7 cut(s) 22, 82, 99, 174, 195, 222, 322
MspI CCGG 1 cut(s) 124
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 265
NdeII GATC 1 cut(s) 48
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 3 cut(s) 127, 143, 299
PkrI GCNGC 2 cut(s) 116, 191
Psp124BI GAGCTC 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 215
SatI GCNGC 2 cut(s) 115, 190
Sau3AI GATC 1 cut(s) 48
SduI GDGCHC 1 cut(s) 215
SetI ASST 4 cut(s) 137, 215, 312, 346
SfaNI GCATC 4 cut(s) 7, 51, 213, 296
Sse9I AATT 2 cut(s) 88, 217
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 2 cut(s) 97, 114
SstI GAGCTC 1 cut(s) 215
StuI AGGCCT 1 cut(s) 71
TaqI TCGA 1 cut(s) 221
TasI AATT 2 cut(s) 88, 217
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 3 cut(s) 127, 143, 299
TscAI CASTG 1 cut(s) 173
TseI GCWGC 1 cut(s) 189
TspRI CASTG 1 cut(s) 173
XapI RAATTY 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.