Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032246.1

Orthogroup ID

OG0004878

Physical Location & Seq

Genomic Coordinates Forward (+)

306 .. 907

Gene Structure 602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032246.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atgctgacgtgtatttcctgctcctccaagcagctcaacaatggatctctgccgcaccaggatgacgacgacggcgttgtcgccactccgaggacgaagcaagctctcaaggctctcaccgctcagatcaaggacatggcattgaaggcctcgggagcctacaagaactgcaagccgtgttcgaggccgtgcggggatcaccggaaccggaactgtgcggattccgatacggtgtcggagtcggcgaagttccactgctcataccggagaaccgggagctcgaattcgacgccaaggctgtgggggaaggagatggagagcaggctgaaagcgctttcgagcggcgaagggacgccggcgtcggtgagtgggaggactgagtctgtggtgttgatggaggatgatgagccaaaggaatgggaagcgcaagtggagcctggtgtgctcatcacttttgtttctctgccccaaggaggaaatgatctgaagcgcattcgattcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N

Protein Analysis

168

Amino Acids

18.33

Weight (kDa)

8.48

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004878)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0099351 RchiOBHm_Chr2g0103041 RchiOBHm_Chr2g0150881 RchiOBHm_Chr3g0495181 RchiOBHm_Chr4g0387961 RchiOBHm_Chr5g0055791 RchiOBHm_Chr7g0184561
rosa_laevigata	RLG00000001087 RLG00000012261 RLG00000014393 RLG00000030000
rosa_multiflora	Rmu_sc0006188.1_g000006 Rmu_sc0006493.1_g000021 Rmu_sc0032246.1_g000001 Rmu_sc0038175.1_g000001
rosa_roxburghii	Rroxscaffold_1G00034240 Rroxscaffold_4G00294030 Rroxscaffold_4G00295050 Rroxscaffold_6G00393460 Rroxscaffold_6G00417660 Rroxscaffold_6G00425110
rosa_rugosa	Rorug07G0313500
rosa_samantha	Rh1BG011700 Rh2AG245400 Rh3AG184600 Rh4CG286600 Rh5BG376400 Rh5CG399400 Rh7CG049100 Rh7CG068800 Rh7DG068200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	77, 358
AccBSI	CCGCTC	2 cut(s)	122, 342
AciI	CCGC	5 cut(s)	53, 120, 192, 218, 342
AclWI	GGATC	2 cut(s)	52, 204
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	1 cut(s)	506
AcyI	GRCGYC	3 cut(s)	290, 353, 359
AfeI	AGCGCT	1 cut(s)	333
AfiI	CCNNNNNNNGG	2 cut(s)	90, 473
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	1 cut(s)	145
AjiI	CACGTC	1 cut(s)	9
AjnI	CCWGG	2 cut(s)	57, 436
AluBI	AGCT	3 cut(s)	34, 104, 279
AluI	AGCT	3 cut(s)	34, 104, 279
Alw21I	GWGCWC	2 cut(s)	281, 447
AlwI	GGATC	2 cut(s)	52, 204
Ama87I	CYCGRG	1 cut(s)	151
Aor51HI	AGCGCT	1 cut(s)	333
AoxI	GGCC	2 cut(s)	147, 185
ApeKI	GCWGC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	283
AspLEI	GCGC	3 cut(s)	334, 427, 492
AsuC2I	CCSGG	1 cut(s)	274
AsuHPI	GGTGA	3 cut(s)	109, 191, 376
AvaI	CYCGRG	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	281
Bbv12I	GWGCWC	2 cut(s)	281, 447
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	307, 388
BceAI	ACGGC	3 cut(s)	88, 160, 172
BciT130I	CCWGG	2 cut(s)	59, 438
BcnI	CCSGG	1 cut(s)	274
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	3 cut(s)	32, 53, 343
BlsI	GCNGC	3 cut(s)	33, 54, 344
Bme1390I	CCNGG	3 cut(s)	59, 274, 438
BmeT110I	CYCGRG	1 cut(s)	151
BmgBI	CACGTC	1 cut(s)	9
BmiI	GGNNCC	3 cut(s)	157, 206, 435
BmrFI	CCNGG	3 cut(s)	59, 274, 438
BpuEI	CTTGAG	1 cut(s)	92
BpuMI	CCSGG	1 cut(s)	274
BsaHI	GRCGYC	3 cut(s)	290, 353, 359
BsaJI	CCNNGG	4 cut(s)	89, 150, 293, 469
BsaWI	WCCGGW	3 cut(s)	201, 207, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 473
Bse118I	RCCGGY	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	59, 438
BseDI	CCNNGG	4 cut(s)	89, 150, 293, 469
BseGI	GGATG	2 cut(s)	67, 406
BseLI	CCNNNNNNNGG	2 cut(s)	90, 473
BseMII	CTCAG	2 cut(s)	137, 369
BseRI	GAGGAG	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	43
BshFI	GGCC	2 cut(s)	149, 187
BsiHKAI	GWGCWC	2 cut(s)	281, 447
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	5 cut(s)	202, 208, 265, 273, 356
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	2 cut(s)	90, 473
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	2 cut(s)	149, 187
BsoBI	CYCGRG	1 cut(s)	151
Bsp1286I	GDGCHC	2 cut(s)	281, 447
Bsp143I	GATC	4 cut(s)	44, 126, 196, 481
BspACI	CCGC	5 cut(s)	53, 120, 192, 218, 342
BspANI	GGCC	2 cut(s)	149, 187
BspCNI	CTCAG	2 cut(s)	136, 370
BspLI	GGNNCC	3 cut(s)	157, 206, 435
BspPI	GGATC	2 cut(s)	52, 204
BsrBI	CCGCTC	2 cut(s)	122, 342
BsrFI	RCCGGY	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	4 cut(s)	89, 150, 293, 469
BssMI	GATC	4 cut(s)	44, 126, 196, 481
BssNI	GRCGYC	3 cut(s)	290, 353, 359
BssT1I	CCWWGG	2 cut(s)	293, 469
Bst2UI	CCWGG	2 cut(s)	59, 438
Bst4CI	ACNGT	2 cut(s)	215, 232
BstACI	GRCGYC	3 cut(s)	290, 353, 359
BstC8I	GCNNGC	4 cut(s)	102, 173, 323, 357
BstDEI	CTNAG	2 cut(s)	123, 378
BstF5I	GGATG	2 cut(s)	67, 406
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	3 cut(s)	334, 427, 492
BstKTI	GATC	4 cut(s)	47, 129, 199, 484
BstMBI	GATC	4 cut(s)	44, 126, 196, 481
BstMWI	GCNNNNNNNGC	7 cut(s)	110, 119, 146, 155, 331, 433, 442
BstNI	CCWGG	2 cut(s)	59, 438
BstSCI	CCNGG	3 cut(s)	57, 272, 436
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	2 cut(s)	300, 417
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	2 cut(s)	149, 187
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	67, 406
BtsI	GCAGTG	1 cut(s)	253
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	4 cut(s)	102, 173, 323, 357
CfoI	GCGC	3 cut(s)	334, 427, 492
Cfr10I	RCCGGY	1 cut(s)	355
CseI	GACGC	3 cut(s)	298, 348, 361
CviAII	CATG	1 cut(s)	136
DdeI	CTNAG	2 cut(s)	123, 378
DpnI	GATC	4 cut(s)	46, 128, 198, 483
DpnII	GATC	4 cut(s)	44, 126, 196, 481
DrdI	GACNNNNNNGTC	2 cut(s)	77, 358
DseDI	GACNNNNNNGTC	2 cut(s)	77, 358
Ecl136II	GAGCTC	1 cut(s)	279
Eco130I	CCWWGG	2 cut(s)	293, 469
Eco147I	AGGCCT	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	281
Eco47III	AGCGCT	1 cut(s)	333
Eco53kI	GAGCTC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	279
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	2 cut(s)	57, 436
EcoT14I	CCWWGG	2 cut(s)	293, 469
EcoT38I	GRGCYC	1 cut(s)	281
ErhI	CCWWGG	2 cut(s)	293, 469
FaeI	CATG	1 cut(s)	139
FaiI	YATR	2 cut(s)	137, 262
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	1 cut(s)	135
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	32, 53, 343
FokI	GGATG	2 cut(s)	74, 413
FriOI	GRGCYC	1 cut(s)	281
Fsp4HI	GCNGC	3 cut(s)	32, 53, 343
GlaI	GCGC	3 cut(s)	333, 426, 491
GluI	GCNGC	3 cut(s)	32, 53, 343
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	149, 187
HapII	CCGG	5 cut(s)	202, 208, 265, 273, 356
HgaI	GACGC	3 cut(s)	298, 348, 361
HhaI	GCGC	3 cut(s)	334, 427, 492
Hin1I	GRCGYC	3 cut(s)	290, 353, 359
Hin1II	CATG	1 cut(s)	139
Hin6I	GCGC	3 cut(s)	332, 425, 490
HinP1I	GCGC	3 cut(s)	332, 425, 490
HinfI	GANTC	4 cut(s)	221, 239, 380, 498
HpaII	CCGG	5 cut(s)	202, 208, 265, 273, 356
HphI	GGTGA	3 cut(s)	109, 191, 376
Hpy188I	TCNGA	5 cut(s)	90, 126, 226, 238, 486
Hpy188III	TCNNGA	1 cut(s)	153
Hpy99I	CGWCG	4 cut(s)	71, 74, 292, 364
HpyAV	CCTTC	3 cut(s)	139, 301, 341
HpyCH4III	ACNGT	2 cut(s)	215, 232
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	7 cut(s)	110, 119, 146, 155, 331, 433, 442
HpyF3I	CTNAG	2 cut(s)	123, 378
HpySE526I	ACGT	1 cut(s)	8
Hsp92I	GRCGYC	3 cut(s)	290, 353, 359
Hsp92II	CATG	1 cut(s)	139
HspAI	GCGC	3 cut(s)	332, 425, 490
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Kzo9I	GATC	4 cut(s)	44, 126, 196, 481
LmnI	GCTCC	4 cut(s)	26, 155, 276, 433
Lsp1109I	GCAGC	1 cut(s)	43
MaeII	ACGT	1 cut(s)	8
MalI	GATC	4 cut(s)	46, 128, 198, 483
MbiI	CCGCTC	2 cut(s)	122, 342
MboI	GATC	4 cut(s)	44, 126, 196, 481
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	281, 447
MluCI	AATT	1 cut(s)	283
MlyI	GAGTC	2 cut(s)	248, 389
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	7 cut(s)	34, 84, 160, 177, 366, 391, 467
MreI	CGCCGGCG	1 cut(s)	355
MroNI	GCCGGC	1 cut(s)	355
MslI	CAYNNNNRTG	1 cut(s)	60
MspI	CCGG	5 cut(s)	202, 208, 265, 273, 356
MspR9I	CCNGG	3 cut(s)	59, 274, 438
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	2 cut(s)	59, 438
MwoI	GCNNNNNNNGC	7 cut(s)	110, 119, 146, 155, 331, 433, 442
NaeI	GCCGGC	1 cut(s)	357
NciI	CCSGG	1 cut(s)	274
NdeII	GATC	4 cut(s)	44, 126, 196, 481
NgoMIV	GCCGGC	1 cut(s)	355
NlaIII	CATG	1 cut(s)	139
NlaIV	GGNNCC	3 cut(s)	157, 206, 435
PceI	AGGCCT	1 cut(s)	149
PcsI	WCGNNNNNNNCGW	2 cut(s)	72, 242
PctI	GAATGC	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	221, 498
PflFI	GACNNNGTC	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	33, 54, 344
PleI	GAGTC	2 cut(s)	247, 388
PpsI	GAGTC	2 cut(s)	247, 388
Psp124BI	GAGCTC	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	57, 436
PspGI	CCWGG	2 cut(s)	57, 436
PspN4I	GGNNCC	3 cut(s)	157, 206, 435
PsuI	RGATCY	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	60
SacI	GAGCTC	1 cut(s)	281
SatI	GCNGC	3 cut(s)	32, 53, 343
Sau3AI	GATC	4 cut(s)	44, 126, 196, 481
SchI	GAGTC	2 cut(s)	248, 389
ScrFI	CCNGG	3 cut(s)	59, 274, 438
SduI	GDGCHC	2 cut(s)	281, 447
SetI	ASST	5 cut(s)	11, 36, 106, 281, 506
SgrAI	CRCCGGYG	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	283
SseBI	AGGCCT	1 cut(s)	149
SsiI	CCGC	5 cut(s)	53, 120, 192, 218, 342
SstI	GAGCTC	1 cut(s)	281
StuI	AGGCCT	1 cut(s)	149
StyD4I	CCNGG	3 cut(s)	57, 272, 436
StyI	CCWWGG	2 cut(s)	293, 469
TaaI	ACNGT	2 cut(s)	215, 232
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	5 cut(s)	182, 281, 287, 338, 496
TasI	AATT	1 cut(s)	283
TauI	GCSGC	2 cut(s)	55, 345
TfiI	GAWTC	2 cut(s)	221, 498
TscAI	CASTG	1 cut(s)	260
TseI	GCWGC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	260
Tth111I	GACNNNGTC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.