Rh4CG286600

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004878
Physical Location & Seq
Reverse (-)
54415582 .. 54422084
6503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG286600.1

Sequence Viewer

Length: 375 bp
ATGGATTTGGGAGCAAATGGTGCAGTGGAGTCCAAAGATTGCATCAAGATCAAGGATATGGCATTCAAGGCCTCGGGAGCCTACAAAAACTGCAAGCCGTGTTCGAGGCTGTGTGGCGACCACCGGAACGGGAACTGTTCGGACTCTGATATGTCGGCAAAAAAAAGTTCAGTTGGAAATGATCTTTACAAAAGTGTAGGAAGTGATGGACAAGACGTTTCCTGGAATGAGGAGATTCAGGAAGTTGCATGTACGAAGTTGAAAGCTGAATTTCCAATCTTTGACAAGGATGAGGCTCCCCTTTACAAGGTCTTAAAATTGGAGAAAGAAAGACATCCAAAATCTATTGGAATCTTCTTGAGTATCAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

124

Amino Acids

13.64

Weight (kDa)

7.56

Isoelectric Point (pI)

23.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BRX_N PF13713 16 - 34 2.6e-06 Transcription factor BRX N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 269
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 67, 262
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 2 cut(s) 266, 370
AluI AGCT 2 cut(s) 266, 370
Ama87I CYCGRG 1 cut(s) 73
AoxI GGCC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 73
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 79, 297
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 307
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 295, 334
BseLI CCNNNNNNNGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 71
BsiHKCI CYCGRG 1 cut(s) 73
BsiSI CCGG 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 307
BsmI GAATGC 1 cut(s) 62
BsnI GGCC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 73
Bsp143I GATC 2 cut(s) 48, 181
BspANI GGCC 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 79, 297
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 2 cut(s) 48, 181
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 95
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 2 cut(s) 295, 334
BstKTI GATC 2 cut(s) 51, 184
BstMBI GATC 2 cut(s) 48, 181
BstMWI GCNNNNNNNGC 3 cut(s) 20, 68, 77
BstNI CCWGG 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 221
BsuRI GGCC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 295, 334
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 252
CviAII CATG 1 cut(s) 249
CviJI RGCY 7 cut(s) 71, 80, 97, 109, 266, 296, 370
CviKI_1 RGCY 7 cut(s) 71, 80, 97, 109, 266, 296, 370
CviQI GTAC 1 cut(s) 252
DpnI GATC 2 cut(s) 50, 183
DpnII GATC 2 cut(s) 48, 181
Eco147I AGGCCT 1 cut(s) 71
Eco88I CYCGRG 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 252
FaiI YATR 3 cut(s) 59, 152, 250
FatI CATG 1 cut(s) 248
FokI GGATG 2 cut(s) 302, 321
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 124
Hin1II CATG 1 cut(s) 252
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 4 cut(s) 29, 143, 235, 351
HpaII CCGG 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 142, 148
Hpy188III TCNNGA 4 cut(s) 46, 75, 239, 358
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 4 cut(s) 23, 42, 93, 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 68, 77
HpySE526I ACGT 1 cut(s) 216
Hsp92II CATG 1 cut(s) 252
Kzo9I GATC 2 cut(s) 48, 181
LmnI GCTCC 3 cut(s) 11, 77, 301
LpnPI CCDG 4 cut(s) 137, 208, 224, 235
LweI GCATC 1 cut(s) 51
MaeII ACGT 1 cut(s) 216
MalI GATC 2 cut(s) 50, 183
MboI GATC 2 cut(s) 48, 181
MboII GAAGA 1 cut(s) 346
MluCI AATT 2 cut(s) 269, 317
MlyI GAGTC 2 cut(s) 38, 137
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 4 cut(s) 82, 99, 223, 286
MseI TTAA 1 cut(s) 314
MspI CCGG 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 62
MvaI CCWGG 1 cut(s) 223
MwoI GCNNNNNNNGC 3 cut(s) 20, 68, 77
NdeII GATC 2 cut(s) 48, 181
NlaIII CATG 1 cut(s) 252
NlaIV GGNNCC 2 cut(s) 79, 297
NspI RCATGY 1 cut(s) 252
PceI AGGCCT 1 cut(s) 71
PctI GAATGC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 235, 351
PfoI TCCNGGA 1 cut(s) 221
PleI GAGTC 2 cut(s) 37, 137
PpsI GAGTC 2 cut(s) 37, 137
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 79, 297
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 314
Sau3AI GATC 2 cut(s) 48, 181
SchI GAGTC 2 cut(s) 38, 137
ScrFI CCNGG 1 cut(s) 223
SetI ASST 4 cut(s) 219, 268, 312, 372
SfaNI GCATC 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 2 cut(s) 269, 317
SseBI AGGCCT 1 cut(s) 71
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 137
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 269, 317
TfiI GAWTC 2 cut(s) 235, 351
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TscAI CASTG 1 cut(s) 30
TspRI CASTG 1 cut(s) 30
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 269
XceI RCATGY 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.