RLG00000014393

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004878
Physical Location & Seq
Reverse (-)
52576183 .. 52576745
563 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014393

Sequence Viewer

Length: 408 bp
ATGTCGTTTTGCATTGATCTTTATCCAGCTGGAGCTGAGTCACCGGTGACCACTGAACCTCCATCTCCGACTGGAAAGCTACCTAGAGACAAAATGGAAGGCGACGACAATCATGAAGACGGTTGGAGCTGCGGCCGAGATTCGGTGCTCGAGACTCGATCTGTGCCTACAGCTTCTTCTTCCTCATCGCGGATTTTGTTCTCATTTCCCGTTCCCAAAACCCTAACTCTAACATCGCGTCGGCTTTCCAGAGTCGCAAATGCTGGAGTGGAGGCCAAAGATTGCATCAAGATCAAGAATATGGCATTCAAGGCCTCGGGAGCCTACAAAAACTGCAAGCCGTGTTCGAGGCTGTGTGGCGACCACTGGAACCTGAACTGTTCGGACTCTGATATGTCGGCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

136

Amino Acids

14.64

Weight (kDa)

8.17

Isoelectric Point (pI)

63.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 190, 238
AciI CCGC 2 cut(s) 132, 190
AcoI YGGCCR 1 cut(s) 133
AfiI CCNNNNNNNGG 2 cut(s) 142, 189
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 1 cut(s) 310
AluBI AGCT 5 cut(s) 29, 35, 79, 129, 173
AluI AGCT 5 cut(s) 29, 35, 79, 129, 173
Alw21I GWGCWC 1 cut(s) 150
Alw26I GTCTC 2 cut(s) 81, 146
Ama87I CYCGRG 2 cut(s) 149, 316
AoxI GGCC 3 cut(s) 133, 273, 312
ApeKI GCWGC 1 cut(s) 129
AsiGI ACCGGT 1 cut(s) 43
AsuHPI GGTGA 2 cut(s) 33, 58
AvaI CYCGRG 2 cut(s) 149, 316
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 116
BccI CCATC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 81, 146
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 2 cut(s) 130, 133
BlsI GCNGC 2 cut(s) 131, 134
BmeT110I CYCGRG 2 cut(s) 149, 316
BmiI GGNNCC 2 cut(s) 322, 371
BmsI GCATC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 123
BpmI CTGGAG 2 cut(s) 51, 285
BsaBI GATNNNNATC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 189
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 76, 371
Bse8I GATNNNNATC 1 cut(s) 21
BseDI CCNNGG 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 2 cut(s) 142, 189
BseMII CTCAG 1 cut(s) 27
BseNI ACTGG 2 cut(s) 76, 371
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 1 cut(s) 116
Bsh1236I CGCG 2 cut(s) 190, 238
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 3 cut(s) 135, 275, 314
BshTI ACCGGT 1 cut(s) 43
BsiEI CGRYCG 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 2 cut(s) 149, 316
BsiSI CCGG 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 142, 189
BsmAI GTCTC 2 cut(s) 81, 146
BsmI GAATGC 1 cut(s) 305
BsnI GGCC 3 cut(s) 135, 275, 314
BsoBI CYCGRG 2 cut(s) 149, 316
Bsp1286I GDGCHC 1 cut(s) 150
Bsp143I GATC 3 cut(s) 16, 158, 291
BspACI CCGC 2 cut(s) 132, 190
BspANI GGCC 3 cut(s) 135, 275, 314
BspCNI CTCAG 1 cut(s) 28
BspFNI CGCG 2 cut(s) 190, 238
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 322, 371
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 76, 371
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 3 cut(s) 16, 158, 291
Bst4CI ACNGT 2 cut(s) 122, 380
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 36
BstEII GGTNACC 1 cut(s) 46
BstFNI CGCG 2 cut(s) 190, 238
BstKTI GATC 3 cut(s) 19, 161, 294
BstMAI GTCTC 2 cut(s) 81, 146
BstMBI GATC 3 cut(s) 16, 158, 291
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 311, 320
BstPI GGTNACC 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 2 cut(s) 190, 238
BstV1I GCAGC 1 cut(s) 116
BstV2I GAAGAC 1 cut(s) 123
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 3 cut(s) 135, 275, 314
BtgZI GCGATG 2 cut(s) 171, 219
BtsIMutI CAGTG 2 cut(s) 51, 364
Cac8I GCNNGC 1 cut(s) 338
CciI TCATGA 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 43
CseI GACGC 1 cut(s) 227
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 1 cut(s) 113
DdeI CTNAG 1 cut(s) 36
DpnI GATC 3 cut(s) 18, 160, 293
DpnII GATC 3 cut(s) 16, 158, 291
EaeI YGGCCR 1 cut(s) 133
EagI CGGCCG 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 133
Eco147I AGGCCT 1 cut(s) 314
Eco52I CGGCCG 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 149, 316
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
FaeI CATG 1 cut(s) 116
FaiI YATR 3 cut(s) 114, 302, 395
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 130, 133
Fsp4HI GCNGC 2 cut(s) 130, 133
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 130, 133
GsuI CTGGAG 2 cut(s) 51, 285
HaeIII GGCC 3 cut(s) 135, 275, 314
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 227
Hin1II CATG 1 cut(s) 116
HinfI GANTC 5 cut(s) 38, 140, 154, 252, 386
HpaII CCGG 1 cut(s) 44
HphI GGTGA 2 cut(s) 33, 58
Hpy188I TCNGA 3 cut(s) 69, 385, 391
Hpy188III TCNNGA 6 cut(s) 113, 151, 249, 289, 295, 318
Hpy99I CGWCG 2 cut(s) 107, 243
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 122, 380
HpyCH4V TGCA 3 cut(s) 12, 285, 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 320
HpyF3I CTNAG 1 cut(s) 36
Hsp92II CATG 1 cut(s) 116
Kzo9I GATC 3 cut(s) 16, 158, 291
LmnI GCTCC 3 cut(s) 32, 126, 320
LpnPI CCDG 8 cut(s) 15, 39, 57, 57, 249, 262, 352, 386
Lsp1109I GCAGC 1 cut(s) 116
LweI GCATC 1 cut(s) 294
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 39, 46
MalI GATC 3 cut(s) 18, 160, 293
MboI GATC 3 cut(s) 16, 158, 291
MboII GAAGA 3 cut(s) 128, 168, 171
MhlI GDGCHC 1 cut(s) 150
MlyI GAGTC 4 cut(s) 47, 148, 261, 380
MmeI TCCRAC 2 cut(s) 92, 104
MnlI CCTC 5 cut(s) 69, 193, 265, 325, 342
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 305
MvnI CGCG 2 cut(s) 190, 238
MwoI GCNNNNNNNGC 2 cut(s) 311, 320
NdeII GATC 3 cut(s) 16, 158, 291
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 2 cut(s) 322, 371
NmeAIII GCCGAG 1 cut(s) 161
NmuCI GTSAC 2 cut(s) 39, 46
PaeR7I CTCGAG 1 cut(s) 149
PagI TCATGA 1 cut(s) 112
PceI AGGCCT 1 cut(s) 314
PctI GAATGC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 140
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 2 cut(s) 131, 134
PleI GAGTC 4 cut(s) 46, 148, 260, 380
PpsI GAGTC 4 cut(s) 46, 148, 260, 380
PspEI GGTNACC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 322, 371
PvuII CAGCTG 1 cut(s) 29
SatI GCNGC 2 cut(s) 130, 133
Sau3AI GATC 3 cut(s) 16, 158, 291
SchI GAGTC 4 cut(s) 47, 148, 261, 380
SduI GDGCHC 1 cut(s) 150
SetI ASST 8 cut(s) 31, 37, 61, 81, 85, 131, 175, 375
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 149
SgrAI CRCCGGYG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 149
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 2 cut(s) 132, 190
SspMI CTAG 1 cut(s) 84
StuI AGGCCT 1 cut(s) 314
TaaI ACNGT 2 cut(s) 122, 380
TaqI TCGA 3 cut(s) 150, 157, 347
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 1 cut(s) 140
TscAI CASTG 2 cut(s) 58, 371
TseFI GTSAC 2 cut(s) 39, 46
TseI GCWGC 1 cut(s) 129
Tsp45I GTSAC 2 cut(s) 39, 46
TspDTI ATGAA 1 cut(s) 129
TspRI CASTG 2 cut(s) 58, 371
XhoI CTCGAG 1 cut(s) 149
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.