Rmu_sc0038175.1_g000001

Protein Brevis radix-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038175.1
OG0004878
Physical Location & Seq
Reverse (-)
2 .. 506
505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038175.1_g000001.1.cds

Sequence Viewer

Length: 410 bp
atgctgacgtgtatttcatgctcctccaagcagctcaacaatggatctctgccgcaccaggatgacgacgacggcgttgtcgccactccgaggacgaagcaagctctcaaggctctcaccgctcagatcaaggacatggcattgaaggcctcgggagcctacaagaactgcaagccgtgttcgaggccgtgcggggatcaccggaaccggaactgtgcggattccgatacggcgtcggagtcggcgaagttccactgctcgtaccggagaaccgggagctcgaattcgacgccgaggctgtgggggaaggagatggagagcaggctgaaggcgctttcgagcggcgaagggacgccggcgtcggtgagtgggaggactgagtctgtggtgttgatggaggatgatgagcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BRX BRX_N

Protein Analysis

137

Amino Acids

14.74

Weight (kDa)

8.17

Isoelectric Point (pI)

34.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 77, 358
AccBSI CCGCTC 2 cut(s) 122, 342
AciI CCGC 5 cut(s) 53, 120, 192, 218, 342
AclWI GGATC 2 cut(s) 52, 204
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 347
AcyI GRCGYC 4 cut(s) 233, 290, 353, 359
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 8
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 57
AluBI AGCT 3 cut(s) 34, 104, 279
AluI AGCT 3 cut(s) 34, 104, 279
Alw21I GWGCWC 1 cut(s) 281
AlwI GGATC 2 cut(s) 52, 204
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 2 cut(s) 147, 185
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 283
AspLEI GCGC 1 cut(s) 334
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 3 cut(s) 109, 191, 376
AvaI CYCGRG 1 cut(s) 151
BanII GRGCYC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 307, 388
BceAI ACGGC 4 cut(s) 88, 160, 172, 246
BciT130I CCWGG 1 cut(s) 59
BcnI CCSGG 1 cut(s) 274
BfoI RGCGCY 1 cut(s) 335
BisI GCNGC 3 cut(s) 32, 53, 343
BlsI GCNGC 3 cut(s) 33, 54, 344
Bme1390I CCNGG 2 cut(s) 59, 274
BmeT110I CYCGRG 1 cut(s) 151
BmgBI CACGTC 1 cut(s) 9
BmiI GGNNCC 2 cut(s) 157, 206
BmrFI CCNGG 2 cut(s) 59, 274
BpuEI CTTGAG 1 cut(s) 92
BpuMI CCSGG 1 cut(s) 274
BsaHI GRCGYC 4 cut(s) 233, 290, 353, 359
BsaJI CCNNGG 3 cut(s) 89, 150, 293
BsaWI WCCGGW 3 cut(s) 201, 207, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse118I RCCGGY 1 cut(s) 355
BseBI CCWGG 1 cut(s) 59
BseDI CCNNGG 3 cut(s) 89, 150, 293
BseGI GGATG 2 cut(s) 67, 406
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 2 cut(s) 137, 369
BseRI GAGGAG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 149, 187
BsiHKAI GWGCWC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 5 cut(s) 202, 208, 265, 273, 356
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 364
BsnI GGCC 2 cut(s) 149, 187
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 44, 126, 196
BspACI CCGC 5 cut(s) 53, 120, 192, 218, 342
BspANI GGCC 2 cut(s) 149, 187
BspCNI CTCAG 2 cut(s) 136, 370
BspLI GGNNCC 2 cut(s) 157, 206
BspPI GGATC 2 cut(s) 52, 204
BsrBI CCGCTC 2 cut(s) 122, 342
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 89, 150, 293
BssMI GATC 3 cut(s) 44, 126, 196
BssNI GRCGYC 4 cut(s) 233, 290, 353, 359
Bst2UI CCWGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 215
BstACI GRCGYC 4 cut(s) 233, 290, 353, 359
BstC8I GCNNGC 4 cut(s) 102, 173, 323, 357
BstDEI CTNAG 2 cut(s) 123, 378
BstF5I GGATG 2 cut(s) 67, 406
BstH2I RGCGCY 1 cut(s) 335
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 3 cut(s) 47, 129, 199
BstMBI GATC 3 cut(s) 44, 126, 196
BstMWI GCNNNNNNNGC 5 cut(s) 110, 119, 146, 155, 331
BstNI CCWGG 1 cut(s) 59
BstSCI CCNGG 2 cut(s) 57, 272
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
BsuRI GGCC 2 cut(s) 149, 187
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 2 cut(s) 67, 406
BtsI GCAGTG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 253
Cac8I GCNNGC 4 cut(s) 102, 173, 323, 357
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 355
CseI GACGC 4 cut(s) 222, 298, 348, 361
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 18, 136
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 2 cut(s) 123, 378
DpnI GATC 3 cut(s) 46, 128, 198
DpnII GATC 3 cut(s) 44, 126, 196
DrdI GACNNNNNNGTC 2 cut(s) 77, 358
DseDI GACNNNNNNGTC 2 cut(s) 77, 358
Ecl136II GAGCTC 1 cut(s) 279
Eco147I AGGCCT 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 347
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 2 cut(s) 21, 139
FaiI YATR 2 cut(s) 19, 137
FaqI GGGAC 1 cut(s) 364
FatI CATG 2 cut(s) 17, 135
FauI CCCGC 1 cut(s) 185
Fnu4HI GCNGC 3 cut(s) 32, 53, 343
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 3 cut(s) 32, 53, 343
GlaI GCGC 1 cut(s) 333
GluI GCNGC 3 cut(s) 32, 53, 343
HaeII RGCGCY 1 cut(s) 335
HaeIII GGCC 2 cut(s) 149, 187
HapII CCGG 5 cut(s) 202, 208, 265, 273, 356
HgaI GACGC 4 cut(s) 222, 298, 348, 361
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 4 cut(s) 233, 290, 353, 359
Hin1II CATG 2 cut(s) 21, 139
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 3 cut(s) 221, 239, 380
HpaII CCGG 5 cut(s) 202, 208, 265, 273, 356
HphI GGTGA 3 cut(s) 109, 191, 376
Hpy188I TCNGA 4 cut(s) 90, 126, 226, 238
Hpy188III TCNNGA 1 cut(s) 153
Hpy99I CGWCG 5 cut(s) 71, 74, 238, 292, 364
HpyAV CCTTC 4 cut(s) 139, 301, 322, 341
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 5 cut(s) 110, 119, 146, 155, 331
HpyF3I CTNAG 2 cut(s) 123, 378
HpySE526I ACGT 1 cut(s) 8
Hsp92I GRCGYC 4 cut(s) 233, 290, 353, 359
Hsp92II CATG 2 cut(s) 21, 139
HspAI GCGC 1 cut(s) 332
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 3 cut(s) 44, 126, 196
LmnI GCTCC 3 cut(s) 26, 155, 276
LpnPI CCDG 8 cut(s) 44, 71, 215, 221, 278, 286, 307, 369
Lsp1109I GCAGC 1 cut(s) 43
MaeII ACGT 1 cut(s) 8
MalI GATC 3 cut(s) 46, 128, 198
MbiI CCGCTC 2 cut(s) 122, 342
MboI GATC 3 cut(s) 44, 126, 196
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 1 cut(s) 283
MlyI GAGTC 2 cut(s) 248, 389
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 7 cut(s) 34, 84, 160, 177, 288, 366, 391
MreI CGCCGGCG 1 cut(s) 355
MroNI GCCGGC 1 cut(s) 355
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 5 cut(s) 202, 208, 265, 273, 356
MspR9I CCNGG 2 cut(s) 59, 274
MvaI CCWGG 1 cut(s) 59
MwoI GCNNNNNNNGC 5 cut(s) 110, 119, 146, 155, 331
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 274
NdeII GATC 3 cut(s) 44, 126, 196
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 21, 139
NlaIV GGNNCC 2 cut(s) 157, 206
NmeAIII GCCGAG 1 cut(s) 318
PceI AGGCCT 1 cut(s) 149
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 242
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 1 cut(s) 221
PflFI GACNNNGTC 1 cut(s) 379
PkrI GCNGC 3 cut(s) 33, 54, 344
PleI GAGTC 2 cut(s) 247, 388
PpsI GAGTC 2 cut(s) 247, 388
Psp124BI GAGCTC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 57
PspGI CCWGG 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 157, 206
PsuI RGATCY 1 cut(s) 44
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 60
SacI GAGCTC 1 cut(s) 281
SatI GCNGC 3 cut(s) 32, 53, 343
Sau3AI GATC 3 cut(s) 44, 126, 196
SchI GAGTC 2 cut(s) 248, 389
ScrFI CCNGG 2 cut(s) 59, 274
SduI GDGCHC 1 cut(s) 281
SetI ASST 4 cut(s) 11, 36, 106, 281
SgrAI CRCCGGYG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 1 cut(s) 283
SseBI AGGCCT 1 cut(s) 149
SsiI CCGC 5 cut(s) 53, 120, 192, 218, 342
SstI GAGCTC 1 cut(s) 281
StuI AGGCCT 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 57, 272
TaaI ACNGT 1 cut(s) 215
TaiI ACGT 1 cut(s) 11
TaqI TCGA 4 cut(s) 182, 281, 287, 338
TasI AATT 1 cut(s) 283
TauI GCSGC 2 cut(s) 55, 345
TfiI GAWTC 1 cut(s) 221
TscAI CASTG 1 cut(s) 260
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 1 cut(s) 260
Tth111I GACNNNGTC 1 cut(s) 379
XapI RAATTY 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.