RLG00000001087

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004878
Physical Location & Seq
Forward (+)
10212483 .. 10220362
7880 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001087

Sequence Viewer

Length: 396 bp
ATGGGGCTCAAAATAGACTTAAACTTGACTGCAGAGGAAGATGATAATTATAATGAAGATGGCATGGATGATGATAATTATAATGAATATGCACTCTCCGCCTCTCCATCAACCCACTCGCCGTCTTTGAAGTCGATGTCGTTTTGCACCGATCTTTATCCGGCTGGAGCTGAGTCGCCGGTGACCACTGGACCTCCATCTATGACTGGAAAGCTACCTAGAGATGAAATGGAAGGCGACGACAATCATGAAGACGGTTGGAGCTGCGGTCGAGATTCGGTGCTCGAGACTCGATCTGTGCCTACAGCTTCTTCTTTCTCATCGCGGATTTCGTTCTCATTTCCCACTCCCAAAACCCTAACCCGAGCGCCGCGTCGGCTTTTCCAGTGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.45

Weight (kDa)

4.39

Isoelectric Point (pI)

62.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 51, 81
AccII CGCG 2 cut(s) 325, 373
AciI CCGC 4 cut(s) 99, 267, 325, 371
AgsI TTSAA 1 cut(s) 130
AluBI AGCT 4 cut(s) 170, 214, 264, 308
AluI AGCT 4 cut(s) 170, 214, 264, 308
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 281
Ama87I CYCGRG 2 cut(s) 284, 363
ApeKI GCWGC 1 cut(s) 264
AspLEI GCGC 1 cut(s) 370
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 193
AvaI CYCGRG 2 cut(s) 284, 363
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 1 cut(s) 9
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 251
BccI CCATC 3 cut(s) 53, 115, 205
BceAI ACGGC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 281
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 2 cut(s) 30, 303
BfoI RGCGCY 1 cut(s) 371
BglI GCCNNNNNGGC 1 cut(s) 376
BisI GCNGC 2 cut(s) 265, 371
BlsI GCNGC 2 cut(s) 266, 372
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 2 cut(s) 284, 363
BmgT120I GGNCC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 156
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 253, 283
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 3 cut(s) 193, 211, 385
Bse8I GATNNNNATC 1 cut(s) 156
BseGI GGATG 1 cut(s) 73
BseJI GATNNNNATC 1 cut(s) 156
BseMII CTCAG 1 cut(s) 162
BseNI ACTGG 3 cut(s) 193, 211, 385
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 2 cut(s) 325, 373
Bsh1285I CGRYCG 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 271
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 2 cut(s) 284, 363
BsiSI CCGG 2 cut(s) 161, 179
BsmAI GTCTC 1 cut(s) 281
BsoBI CYCGRG 2 cut(s) 284, 363
Bsp1286I GDGCHC 2 cut(s) 9, 285
Bsp143I GATC 2 cut(s) 151, 293
BspACI CCGC 4 cut(s) 99, 267, 325, 371
BspCNI CTCAG 1 cut(s) 163
BspFNI CGCG 2 cut(s) 325, 373
BspHI TCATGA 1 cut(s) 247
BspMAI CTGCAG 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 3 cut(s) 193, 211, 385
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 2 cut(s) 151, 293
Bst4CI ACNGT 1 cut(s) 257
BstDEI CTNAG 1 cut(s) 171
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 325, 373
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 1 cut(s) 370
BstKTI GATC 2 cut(s) 154, 296
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 151, 293
BstMCI CGRYCG 1 cut(s) 271
BstMWI GCNNNNNNNGC 2 cut(s) 98, 376
BstPI GGTNACC 1 cut(s) 181
BstSFI CTRYAG 2 cut(s) 30, 303
BstUI CGCG 2 cut(s) 325, 373
BstV1I GCAGC 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 186, 392
CciI TCATGA 1 cut(s) 247
CfoI GCGC 1 cut(s) 370
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 362
CviAII CATG 2 cut(s) 64, 248
CviJI RGCY 7 cut(s) 7, 164, 170, 214, 264, 308, 379
CviKI_1 RGCY 7 cut(s) 7, 164, 170, 214, 264, 308, 379
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 153, 295
DpnII GATC 2 cut(s) 151, 293
EciI GGCGGA 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 191
Eco88I CYCGRG 2 cut(s) 284, 363
Eco91I GGTNACC 1 cut(s) 181
EcoO65I GGTNACC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 9
FaeI CATG 2 cut(s) 67, 251
FaiI YATR 6 cut(s) 51, 65, 81, 90, 203, 249
FatI CATG 2 cut(s) 63, 247
Fnu4HI GCNGC 2 cut(s) 265, 371
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 265, 371
FspBI CTAG 1 cut(s) 219
GlaI GCGC 1 cut(s) 369
GluI GCNGC 2 cut(s) 265, 371
GsuI CTGGAG 1 cut(s) 186
HaeII RGCGCY 1 cut(s) 371
HapII CCGG 2 cut(s) 161, 179
HgaI GACGC 1 cut(s) 362
HhaI GCGC 1 cut(s) 370
Hin1II CATG 2 cut(s) 67, 251
Hin6I GCGC 1 cut(s) 368
HinP1I GCGC 1 cut(s) 368
HinfI GANTC 3 cut(s) 173, 275, 289
HpaII CCGG 2 cut(s) 161, 179
HphI GGTGA 1 cut(s) 193
Hpy188III TCNNGA 3 cut(s) 248, 272, 286
Hpy99I CGWCG 2 cut(s) 242, 378
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 32, 92, 147
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 376
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 67, 251
HspAI GCGC 1 cut(s) 368
Kzo9I GATC 2 cut(s) 151, 293
LmnI GCTCC 2 cut(s) 167, 261
LpnPI CCDG 5 cut(s) 150, 174, 174, 192, 192
Lsp1109I GCAGC 1 cut(s) 251
MaeI CTAG 1 cut(s) 219
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 153, 295
MboI GATC 2 cut(s) 151, 293
MboII GAAGA 4 cut(s) 50, 68, 263, 303
MhlI GDGCHC 2 cut(s) 9, 285
MluCI AATT 2 cut(s) 46, 76
MlyI GAGTC 2 cut(s) 182, 283
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 3 cut(s) 28, 112, 204
MseI TTAA 1 cut(s) 20
MspI CCGG 2 cut(s) 161, 179
MvnI CGCG 2 cut(s) 325, 373
MwoI GCNNNNNNNGC 2 cut(s) 98, 376
NdeII GATC 2 cut(s) 151, 293
NlaIII CATG 2 cut(s) 67, 251
NmuCI GTSAC 1 cut(s) 181
PaeR7I CTCGAG 1 cut(s) 284
PagI TCATGA 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 329
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 266, 372
PleI GAGTC 2 cut(s) 181, 283
PpsI GAGTC 2 cut(s) 181, 283
PsiI TTATAA 2 cut(s) 51, 81
PspEI GGTNACC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 191
PstI CTGCAG 1 cut(s) 34
SaqAI TTAA 1 cut(s) 20
SatI GCNGC 2 cut(s) 265, 371
Sau3AI GATC 2 cut(s) 151, 293
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 2 cut(s) 182, 283
SduI GDGCHC 2 cut(s) 9, 285
SetI ASST 6 cut(s) 172, 196, 216, 220, 266, 310
SfcI CTRYAG 2 cut(s) 30, 303
Sfr274I CTCGAG 1 cut(s) 284
SgrAI CRCCGGYG 1 cut(s) 178
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 2 cut(s) 46, 76
SsiI CCGC 4 cut(s) 99, 267, 325, 371
SspMI CTAG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 4 cut(s) 134, 271, 285, 292
TasI AATT 2 cut(s) 46, 76
TauI GCSGC 1 cut(s) 373
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 20
Tru9I TTAA 1 cut(s) 20
TscAI CASTG 2 cut(s) 193, 392
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 1 cut(s) 264
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 4 cut(s) 69, 99, 240, 264
TspRI CASTG 2 cut(s) 193, 392
VpaK11BI GGWCC 1 cut(s) 191
XhoI CTCGAG 1 cut(s) 284
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.